FFCP PHASE1:Hg19::chr3:87040285..87040306,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389136 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24327 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-16bp_to_ENST00000383698_5end | |||
|coexpression_cluster_id=C1930 | |||
|description=CAGE_peak_2_at_VGLL3_5end | |||
|id=chr3:87040285..87040306,- | |||
|ontology_enrichment_celltype=CL:0000057!8.59e-22!75;CL:0000055!7.88e-20!180;CL:0002620!4.38e-11!23;CL:0000136!3.63e-08!15 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.44e-12;23!CL:0000349;9.92e-10;19!CL:0000057;1.59e-09;73!CL:0000136;3.44e-08;13!CL:0000134;4.37e-08;55!CL:0002320;1.62e-07;188!CL:0000723;2.49e-07;61!CL:0000048;5.01e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.46e-24,76;CL:0002620,6.17e-12,23;CL:0000349,8.88e-10,19;CL:0000136,9.28e-09,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!5.96e-15!95;UBERON:0004923!1.24e-12!57;UBERON:0000475!3.05e-11!365;UBERON:0000481!9.62e-11!347;UBERON:0000914!1.01e-10!83;UBERON:0002329!1.01e-10!83;UBERON:0003077!1.01e-10!83;UBERON:0003059!1.01e-10!83;UBERON:0007282!1.01e-10!83;UBERON:0009618!1.01e-10!83;UBERON:0007285!1.01e-10!83;UBERON:0005256!1.30e-10!143;UBERON:0000478!1.46e-10!24;UBERON:0002199!4.33e-10!45;UBERON:0002416!4.33e-10!45;UBERON:0003104!7.17e-10!238;UBERON:0009142!7.17e-10!238;UBERON:0000486!1.34e-09!82;UBERON:0000468!1.37e-09!659;UBERON:0002100!1.86e-09!216;UBERON:0005631!5.67e-09!14;UBERON:0000158!5.67e-09!14;UBERON:0004290!6.32e-09!70;UBERON:0002097!1.24e-08!40;UBERON:0000064!4.00e-08!219;UBERON:0004119!1.74e-07!169;UBERON:0000925!1.74e-07!169;UBERON:0006595!1.74e-07!169;UBERON:0002385!5.56e-07!63;UBERON:0001015!5.56e-07!63;UBERON:0000383!5.56e-07!63;UBERON:0001134!8.12e-07!61;UBERON:0002036!8.12e-07!61;UBERON:0003082!8.12e-07!61;UBERON:0000467!9.24e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;2.40e-11;24!UBERON:0002384;4.62e-08;198!UBERON:0005631;7.69e-08;10!UBERON:0000158;7.69e-08;10!UBERON:0002199;2.73e-07;46!UBERON:0002416;2.73e-07;46!UBERON:0002097;3.19e-07;41!UBERON:0004923;4.50e-07;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004923,3.67e-13,66;UBERON:0003102,3.06e-12,99;UBERON:0000478,2.29e-11,24;UBERON:0002199,9.62e-11,46;UBERON:0002416,9.62e-11,46;UBERON:0003104,3.80e-10,160;UBERON:0009142,3.80e-10,160;UBERON:0005631,1.23e-09,14;UBERON:0000158,1.23e-09,14;UBERON:0002097,3.64e-09,41;UBERON:0000486,4.45e-09,83;UBERON:0007524,1.08e-08,73;UBERON:0002329,1.18e-08,71;UBERON:0003059,1.18e-08,71;UBERON:0007282,1.18e-08,71;UBERON:0004290,1.18e-08,71;UBERON:0009618,1.18e-08,71;UBERON:0005256,1.32e-08,122;UBERON:0004119,2.06e-08,160;UBERON:0000925,2.06e-08,160;UBERON:0006595,2.06e-08,160;UBERON:0003077,2.74e-08,72;UBERON:0007285,2.74e-08,72;UBERON:0007503,4.56e-08,78;UBERON:0002100,5.99e-08,199 | |||
|phase1_expression=25.4349730978779,36.1829885375762,41.8634580165034,26.0190575718139,24.1358990990735,26.1701557230111,12.6649939084155,5.68547886084148,19.0665508585882,8.84642171405432,3.48900583986214,21.1888130966267,13.979649846108,11.6340371782444,15.575676659212,2.01697543935533,2.41077811209591,2.19093027116212,2.43966399395253,1.47745269692145,3.87601313364081,3.13454721478088,0.85870796139317,0.547497700291537,4.3939923858181,0,0,0,0,0,0.77408061658038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,8.04841031644363,18.9236591528425,2.1686349143074,8.02140657017423,5.5041677205113,0.795285947051099,0,2.9305793320861,6.87361132133948,9.57399164055074,6.35248516163906,0.728590576585084,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0.838998872419812,1.37559020970034,0.626984899610432,0.775250277507987,0.71153252537342,0.66944122552934,0,0,0,0.735326160691737,0,0.803697554556718,0.22452937262617,1.23872628531654,1.53316637465883,0,0.183201743930407,0,0,0.436094052142534,40.2547280873208,6.45815609489357,8.60659675285922,4.87622255272983,7.09336764396714,10.0921968025615,5.33744978648525,0.74000264525148,18.0502400531864,6.19669091520565,2.45192854670188,10.1409476522104,12.09969441408,9.13853584151807,16.2323239951767,5.70471821544449,14.3470733329729,8.10298040641978,12.302343771978,8.28659759543266,11.6367877615289,3.93069815397658,24.2815585763049,46.3321114340001,56.376859875511,27.3048408581408,11.4978902690598,7.74346124188705,8.75829639103749,30.1999885877759,24.1437691484461,56.7002422228186,34.4045154896107,6.91936317276128,19.9122495614637,67.4841348666673,76.5074163186018,13.5040993237981,53.8964727917035,20.3536026636047,33.5010341396862,7.76371128309825,18.2207199651441,25.4958111986556,85.4223059400538,23.7619703523653,17.0404604407975,16.2210878146501,21.0255134465005,1.54608682530637,0.272746120590835,0.860413786167011,0.121973706129595,0,0.232387885739037,0.932949495138334,0.756962552626885,0,15.6449532329816,29.5890831568727,4.14404764057442,62.2253023562852,38.9814920101576,11.7123732039445,9.4407426443737,10.6044853148732,7.94116603673236,8.27941887551143,12.1008015746659,7.55055325696921,7.2601942096378,9.23393176671337,0,12.6217596423101,12.347220339942,8.82052268313252,0,0,0,0,8.48620225947483,5.66173773985134,0.768251997860379,0,0.201057944823262,2.03694579348765,6.84197441151682,4.15973914111831,11.5465073620219,0.231860809950154,17.8461215238449,0,0.462985512576611,0,0,0,0,0,0,0,1.17587489739202,0.141775097242386,0.985143749731331,0.290633938513962,1.53353071666084,0,0,0.414656231081544,0,0.50496973370552,0.190493682876507,0,0,11.9750712215894,0.719792448923265,0,0,7.17638939810309,7.84728123899904,8.800594298514,8.53193324001333,21.4593867511129,10.988935783228,28.4553784745811,18.7213386440459,4.8869401109807,2.83698264046557,5.59486575933809,24.0203029345688,5.96883765930587,5.76268235746538,5.86325131728723,15.9926376934146,3.16780749173372,3.91871190177462,2.61460037580088,7.09808237392605,0,0,0,12.9397421965455,21.8237678084816,7.13184525203592,12.4511923734118,10.0683398049688,12.5342674267927,0,0,0,0,1.77866236955724,0,0,0,0.637938751653163,0,0,0,24.1702238686706,18.0061387581484,17.0896964930833,28.9079497527822,33.0093629274749,29.017244366244,41.8194851523986,16.2510893852968,4.5481500811197,10.3473071292505,21.9194447516694,9.58719676416856,48.6548241021264,1.76221041716467,2.74514739048685,0,0,0,7.57818928615649,21.6366071363646,18.4458078931105,28.5323978991593,8.90079445070762,21.8914873657797,36.5196575378748,28.1438986986687,17.0505156412224,8.90508398669946,11.7199367290018,14.3824997503633,6.98080826117378,1.03850885836724,9.18061989833678,3.62578348774867,2.40607764363942,0.920809889358963,4.13332013392584,5.46273504020151,7.47409165268718,2.25599806453706,6.2382423054576,2.35304930753057,4.38417673959782,2.74434235121477,0,0,2.59099099322567,1.54227252690289,2.98041081298238,2.50844886927427,2.29388645740534,1.66215201785745,0.895499018888713,0,0,0.769350375349168,4.26419039409617,5.85681110395745,44.1015529852251,0.183138929636687,0,2.87132768998086,1.30012049207304,22.4957501781823,5.80024309752732,12.6319866034008,15.0433601231607,12.2674549511232,26.1031195029905,23.0576543323623,16.874872228388,17.0941508441736,1.32227932288782,2.69066094311149,1.27612712494584,2.73126008309985,11.6211387324321,11.0184321390724,2.0911118104818,0.924100740528266,0,0.869932992075073,1.29726953372744,0.286249773483982,7.07100901783368,17.7172477842486,44.2262049903274,7.16513815671735,18.8293154734925,6.36406495851874,0,26.261378807164,26.3555548546613,24.2693548832114,0.404364963146632,0,0.842516912477962,11.2155759990606,1.70599442741899,0,8.87249424151907,9.61556937285247,4.52032466480971,2.75682671773062,0,0.876901770507525,9.83918408253369,26.2357900818653,1.82619339266434,2.78841148289775,1.97186921772569,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| |||
|short_description=p2@VGLL3 | |||
}} |
Revision as of 19:58, 21 January 2014
Short description: | p2@VGLL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VGLL3_5end |
Coexpression cluster: | C1930_placenta_Fibroblast_amniotic_chorionic_bronchogenic_Hair_bone |
Association with transcript: | -16bp_to_ENST00000383698_5end |
EntrezGene: | VGLL3 |
HGNC: | 24327 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.46e-24 | 76 |
skin fibroblast | 6.17e-12 | 23 |
extraembryonic cell | 8.88e-10 | 19 |
fat cell | 9.28e-09 | 15 |
Ontology term | p-value | n |
---|---|---|
organ component layer | 3.67e-13 | 66 |
surface structure | 3.06e-12 | 99 |
extraembryonic structure | 2.29e-11 | 24 |
integument | 9.62e-11 | 46 |
integumental system | 9.62e-11 | 46 |
mesenchyme | 3.80e-10 | 160 |
entire embryonic mesenchyme | 3.80e-10 | 160 |
extraembryonic membrane | 1.23e-09 | 14 |
membranous layer | 1.23e-09 | 14 |
skin of body | 3.64e-09 | 41 |
multilaminar epithelium | 4.45e-09 | 83 |
dense mesenchyme tissue | 1.08e-08 | 73 |
somite | 1.18e-08 | 71 |
presomitic mesoderm | 1.18e-08 | 71 |
presumptive segmental plate | 1.18e-08 | 71 |
dermomyotome | 1.18e-08 | 71 |
trunk paraxial mesoderm | 1.18e-08 | 71 |
trunk mesenchyme | 1.32e-08 | 122 |
endoderm-derived structure | 2.06e-08 | 160 |
endoderm | 2.06e-08 | 160 |
presumptive endoderm | 2.06e-08 | 160 |
paraxial mesoderm | 2.74e-08 | 72 |
presumptive paraxial mesoderm | 2.74e-08 | 72 |
epithelial vesicle | 4.56e-08 | 78 |
trunk | 5.99e-08 | 199 |