FFCP PHASE1:Hg19::chr3:120429336..120429355,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=285282 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18072 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=37bp_to_ENST00000468192_5end | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_3_at_RABL3_5end | |||
|id=chr3:120429336..120429355,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002327;1.44e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002327,1.44e-09,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.97e-44;3!UBERON:0008425;5.05e-34;1 | |||
|ontology_enrichment_disease=DOID:1799!5.05e-11!1;DOID:10165!5.05e-11!1;DOID:1798!5.05e-11!1;DOID:5093!1.40e-10!4;DOID:1612!1.40e-10!4 | |||
|ontology_enrichment_disease_v019=DOID:5093;1.44e-09;4!DOID:1612;1.44e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.44e-09,4;DOID:1612,1.44e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!8.49e-21!2;UBERON:0002757!8.49e-21!2;UBERON:0010134!8.49e-21!2;UBERON:0002784!8.49e-21!2;UBERON:0005408!8.49e-21!2;UBERON:0001899!8.49e-21!2;UBERON:0000998!6.77e-11!1;UBERON:0006868!6.77e-11!1;UBERON:0003296!7.11e-11!4;UBERON:0010133!7.11e-11!4;UBERON:0002171!7.46e-11!1;UBERON:0006518!7.46e-11!1;UBERON:0008949!7.46e-11!1;UBERON:0000101!7.46e-11!1;UBERON:0002167!7.46e-11!1;UBERON:0000966!9.36e-09!5;UBERON:0005388!9.36e-09!5;UBERON:0001802!9.36e-09!5;UBERON:0000970!5.14e-08!20;UBERON:0003075!1.07e-07!86;UBERON:0007284!1.07e-07!86;UBERON:0002104!1.22e-07!21;UBERON:0005743!1.47e-07!86;UBERON:0002346!2.66e-07!90;UBERON:0002037!3.46e-07!6;UBERON:0006215!3.46e-07!6;UBERON:0000020!5.50e-07!23;UBERON:0007023!8.44e-07!115;UBERON:0000073!9.64e-07!94;UBERON:0001016!9.64e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.04e-66;2!UBERON:0002757;1.04e-66;2!UBERON:0010134;1.04e-66;2!UBERON:0005408;1.04e-66;2!UBERON:0001899;1.04e-66;2!UBERON:0003296;5.06e-34;4!UBERON:0010133;5.06e-34;4!UBERON:0002784;5.06e-34;4!UBERON:0000966;4.63e-27;5!UBERON:0005388;4.63e-27;5!UBERON:0001802;4.63e-27;5!UBERON:0001894;5.89e-20;7!UBERON:0000970;1.50e-15;20!UBERON:0002104;7.53e-15;21!UBERON:0000020;1.25e-13;23!UBERON:0001032;4.28e-13;24!UBERON:0004456;4.28e-13;24!UBERON:0001911;1.44e-09;4!UBERON:0000019;6.82e-08;19!UBERON:0000047;6.82e-08;19!UBERON:0004088;6.82e-08;19!UBERON:0010230;6.82e-08;19!UBERON:0001456;3.14e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.04e-66,2;UBERON:0002757,1.04e-66,2;UBERON:0010134,1.04e-66,2;UBERON:0005408,1.04e-66,2;UBERON:0001899,1.04e-66,2;UBERON:0003296,5.06e-34,4;UBERON:0010133,5.06e-34,4;UBERON:0002784,5.06e-34,4;UBERON:0000966,9.46e-23,6;UBERON:0005388,9.46e-23,6;UBERON:0001802,9.46e-23,6;UBERON:0001894,5.89e-20,7;UBERON:0006222,5.89e-20,7;UBERON:0000970,7.53e-15,21;UBERON:0002104,7.53e-15,21;UBERON:0000020,4.28e-13,24;UBERON:0001032,4.28e-13,24;UBERON:0004456,4.28e-13,24;UBERON:0005085,2.77e-10,31;UBERON:0001911,1.44e-09,4;UBERON:0005333,1.44e-09,4;UBERON:0008425,1.44e-09,4;UBERON:0005311,1.44e-09,4;UBERON:0003056,4.43e-09,61;UBERON:0010371,2.70e-08,104;UBERON:0000019,1.52e-07,20;UBERON:0000047,1.52e-07,20;UBERON:0010312,1.52e-07,20;UBERON:0004088,1.52e-07,20;UBERON:0010230,1.52e-07,20;UBERON:0003072,1.52e-07,20;UBERON:0004128,1.52e-07,20;UBERON:0003071,1.52e-07,20;UBERON:0001456,6.09e-07,22;UBERON:0003075,6.64e-07,82;UBERON:0007284,6.64e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463721619900307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260427761085233,13.2939199994217,0,0,0,0,0,0,0,0,0.120596438625408,0,0.221158519862449,0.295547618953547,0.438770794307945,0,0,0,0,0.23056390438806,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.8578814858586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0,0,0,14.999651404592,66.2478932771083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.14832603613882,3.95034029331817,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0.549702583727146,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@RABL3 | |||
}} |
Revision as of 20:51, 21 January 2014
Short description: | p3@RABL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RABL3_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 37bp_to_ENST00000468192_5end |
EntrezGene: | RABL3 |
HGNC: | 18072 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mammary gland epithelial cell | 1.44e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.04e-66 | 2 |
regional part of epithalamus | 1.04e-66 | 2 |
secretory circumventricular organ | 1.04e-66 | 2 |
circumventricular organ | 1.04e-66 | 2 |
epithalamus | 1.04e-66 | 2 |
gland of diencephalon | 5.06e-34 | 4 |
neuroendocrine gland | 5.06e-34 | 4 |
regional part of diencephalon | 5.06e-34 | 4 |
retina | 9.46e-23 | 6 |
photoreceptor array | 9.46e-23 | 6 |
posterior segment of eyeball | 9.46e-23 | 6 |
diencephalon | 5.89e-20 | 7 |
future diencephalon | 5.89e-20 | 7 |
eye | 7.53e-15 | 21 |
visual system | 7.53e-15 | 21 |
sense organ | 4.28e-13 | 24 |
sensory system | 4.28e-13 | 24 |
entire sense organ system | 4.28e-13 | 24 |
ectodermal placode | 2.77e-10 | 31 |
mammary gland | 1.44e-09 | 4 |
mammary bud | 1.44e-09 | 4 |
mammary ridge | 1.44e-09 | 4 |
mammary placode | 1.44e-09 | 4 |
pre-chordal neural plate | 4.43e-09 | 61 |
ecto-epithelium | 2.70e-08 | 104 |
camera-type eye | 1.52e-07 | 20 |
simple eye | 1.52e-07 | 20 |
immature eye | 1.52e-07 | 20 |
ocular region | 1.52e-07 | 20 |
eyeball of camera-type eye | 1.52e-07 | 20 |
optic cup | 1.52e-07 | 20 |
optic vesicle | 1.52e-07 | 20 |
eye primordium | 1.52e-07 | 20 |
face | 6.09e-07 | 22 |
neural plate | 6.64e-07 | 82 |
presumptive neural plate | 6.64e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.44e-09 | 4 |
breast cancer | 1.44e-09 | 4 |