FFCP PHASE1:Hg19::chr2:219575543..219575622,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9654 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28976 | |||
|TSSclassifier=strong | |||
|UniProt=Q14679,C9J982,E9PH58 | |||
|association_with_transcript=0bp_to_ENST00000392102,ENST00000415717,ENST00000457313,NM_014640,uc002viy.2,uc010zkl.1_5end | |||
|description=CAGE_peak_1_at_TTLL4_5end | |||
|id=chr2:219575543..219575622,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.32e-27!254;CL:1000497!2.03e-07!18;CL:0002518!2.03e-07!18;CL:1000449!2.24e-07!16;CL:0000223!8.30e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:1000497;5.36e-08;17!CL:0002518;5.36e-08;17!CL:1000449;5.48e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.64e-27,253;CL:1000449,6.56e-08,15;CL:1000497,6.73e-08,17;CL:0002518,6.73e-08,17;CL:0000223,2.06e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.95e-26!235;DOID:14566!6.65e-25!239;DOID:0050687!1.39e-18!143;DOID:305!9.95e-16!106;DOID:0050686!3.76e-10!137;DOID:3095!2.87e-08!22;DOID:2994!2.87e-08!22;DOID:2531!1.50e-07!51;DOID:0060083!1.50e-07!51 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.53e-08;22!DOID:2994;2.53e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.95e-26,235;DOID:14566,6.65e-25,239;DOID:0050687,1.39e-18,143;DOID:305,9.95e-16,106;DOID:0050686,3.76e-10,137;DOID:3095,2.87e-08,22;DOID:2994,2.87e-08,22;DOID:2531,1.50e-07,51;DOID:0060083,1.50e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0005177!5.16e-11!107;UBERON:0005172!4.81e-09!55;UBERON:0005173!4.81e-09!55;UBERON:0000466!3.28e-08!126;UBERON:0002113!4.60e-08!27;UBERON:0003918!4.60e-08!27;UBERON:0005095!4.60e-08!27;UBERON:0007687!4.60e-08!27;UBERON:0000489!6.28e-08!32;UBERON:0004211!2.24e-07!16;UBERON:0001285!2.24e-07!16;UBERON:0007684!2.24e-07!16;UBERON:0003220!2.24e-07!16;UBERON:0004208!2.24e-07!16;UBERON:0004119!3.56e-07!169;UBERON:0000925!3.56e-07!169;UBERON:0006595!3.56e-07!169;UBERON:0000464!7.83e-07!104;UBERON:0000077!8.34e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;5.55e-11;30!UBERON:0001008;5.55e-11;30!UBERON:0002113;4.93e-10;24!UBERON:0011143;4.93e-10;24!UBERON:0000489;1.18e-09;29!UBERON:0006555;5.48e-08;15!UBERON:0004819;5.48e-08;15!UBERON:0001285;5.48e-08;15!UBERON:0007684;5.48e-08;15!UBERON:0001851;5.01e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,1.45e-12,101;UBERON:0005172,2.89e-09,54;UBERON:0005173,2.89e-09,54;UBERON:0002113,1.99e-08,26;UBERON:0003918,1.99e-08,26;UBERON:0011143,1.99e-08,26;UBERON:0005095,1.99e-08,26;UBERON:0007687,1.99e-08,26;UBERON:0000489,3.09e-08,31;UBERON:0004211,6.56e-08,15;UBERON:0009773,6.56e-08,15;UBERON:0001231,6.56e-08,15;UBERON:0001285,6.56e-08,15;UBERON:0007684,6.56e-08,15;UBERON:0004208,6.56e-08,15;UBERON:0006554,1.71e-07,47;UBERON:0001008,2.35e-07,48;UBERON:0001851,5.24e-07,15;UBERON:0006555,8.88e-07,16;UBERON:0004819,8.88e-07,16 | |||
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| |||
|short_description=p1@TTLL4 | |||
}} |
Revision as of 08:41, 21 January 2014
Short description: | p1@TTLL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TTLL4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000392102, ENST00000415717, ENST00000457313, NM_014640, uc002viy.2, uc010zkl.1_5end |
EntrezGene: | TTLL4 |
HGNC: | 28976 |
UniProt: | Q14679C9J982E9PH58 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.64e-27 | 253 |
epithelial cell of nephron | 6.56e-08 | 15 |
kidney cell | 6.73e-08 | 17 |
kidney epithelial cell | 6.73e-08 | 17 |
endodermal cell | 2.06e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 1.45e-12 | 101 |
abdomen element | 2.89e-09 | 54 |
abdominal segment element | 2.89e-09 | 54 |
kidney | 1.99e-08 | 26 |
kidney mesenchyme | 1.99e-08 | 26 |
upper urinary tract | 1.99e-08 | 26 |
kidney rudiment | 1.99e-08 | 26 |
kidney field | 1.99e-08 | 26 |
cavitated compound organ | 3.09e-08 | 31 |
nephron epithelium | 6.56e-08 | 15 |
renal tubule | 6.56e-08 | 15 |
nephron tubule | 6.56e-08 | 15 |
nephron | 6.56e-08 | 15 |
uriniferous tubule | 6.56e-08 | 15 |
nephrogenic mesenchyme | 6.56e-08 | 15 |
urinary system structure | 1.71e-07 | 47 |
renal system | 2.35e-07 | 48 |
cortex | 5.24e-07 | 15 |
excretory tube | 8.88e-07 | 16 |
kidney epithelium | 8.88e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.95e-26 | 235 |
disease of cellular proliferation | 6.65e-25 | 239 |
cell type cancer | 1.39e-18 | 143 |
carcinoma | 9.95e-16 | 106 |
organ system cancer | 3.76e-10 | 137 |
germ cell and embryonal cancer | 2.87e-08 | 22 |
germ cell cancer | 2.87e-08 | 22 |
hematologic cancer | 1.50e-07 | 51 |
immune system cancer | 1.50e-07 | 51 |