FFCP PHASE1:Hg19::chr16:3068393..3068407,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1028 | |||
|description=CAGE_peak_at_chr16:3068393..3068407,+ | |||
|id=chr16:3068393..3068407,+ | |||
|ontology_enrichment_celltype=CL:1000449!2.26e-14!16;CL:1000507!2.40e-14!12;CL:1000494!2.40e-14!12;CL:0000064!2.47e-14!3;CL:0005012!2.47e-14!3;CL:0000067!2.47e-14!3;CL:0002304!2.47e-14!3;CL:1000497!1.15e-12!18;CL:0002518!1.15e-12!18;CL:0002319!1.47e-12!25;CL:0000242!7.23e-11!2;CL:0000133!3.96e-10!59;CL:0000047!8.24e-10!8;CL:0002322!9.73e-09!5;CL:0000221!4.92e-08!71;CL:0000540!7.50e-08!6;CL:0000031!7.50e-08!6;CL:0000404!7.50e-08!6;CL:0000066!1.35e-07!254;CL:0000322!1.92e-07!3;CL:0002605!7.09e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.44e-15;15!CL:1000497;7.99e-14;17!CL:0002518;7.99e-14;17!CL:1000507;7.67e-11;10!CL:1000494;7.67e-11;10!CL:0000322;1.53e-09;3!CL:0002681;2.77e-09;12!CL:0002584;2.77e-09;12!CL:0000083;1.49e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,1.44e-15,15;CL:1000497,7.99e-14,17;CL:0002518,7.99e-14,17;CL:1000507,7.67e-11,10;CL:1000494,7.67e-11,10;CL:0000322,1.30e-09,3;CL:0002681,2.89e-09,12;CL:0002584,2.89e-09,12;CL:0000083,1.49e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1799;3.58e-26;1!DOID:10165;3.58e-26;1!DOID:1798;3.58e-26;1!DOID:1793;1.49e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,3.58e-26,1;DOID:10165,3.58e-26,1;DOID:1798,3.58e-26,1;DOID:1793,1.49e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000488!9.83e-19!4;UBERON:0007625!9.09e-15!11;UBERON:0004211!2.26e-14!16;UBERON:0001285!2.26e-14!16;UBERON:0007684!2.26e-14!16;UBERON:0003220!2.26e-14!16;UBERON:0004208!2.26e-14!16;UBERON:0009773!2.40e-14!12;UBERON:0001231!2.40e-14!12;UBERON:0004810!2.40e-14!12;UBERON:0001778!2.47e-14!3;UBERON:0001775!2.47e-14!3;UBERON:0000058!8.20e-14!26;UBERON:0006555!1.81e-13!17;UBERON:0005103!1.81e-13!17;UBERON:0000083!1.81e-13!17;UBERON:0009201!1.81e-13!17;UBERON:0004819!1.81e-13!17;UBERON:0006553!1.81e-13!17;UBERON:0003074!1.81e-13!17;UBERON:0003060!1.81e-13!17;UBERON:0000080!1.15e-12!18;UBERON:0002120!1.15e-12!18;UBERON:0004875!1.15e-12!18;UBERON:0005721!1.15e-12!18;UBERON:0005754!1.15e-12!18;UBERON:0007297!1.15e-12!18;UBERON:0002203!1.52e-12!6;UBERON:0001768!1.52e-12!6;UBERON:0004876!2.68e-11!20;UBERON:0003887!1.03e-10!21;UBERON:0002113!2.36e-10!27;UBERON:0003918!2.36e-10!27;UBERON:0005095!2.36e-10!27;UBERON:0007687!2.36e-10!27;UBERON:0000489!1.56e-08!32;UBERON:0000019!2.67e-08!19;UBERON:0000047!2.67e-08!19;UBERON:0004088!2.67e-08!19;UBERON:0003072!2.67e-08!19;UBERON:0003071!2.67e-08!19;UBERON:0004128!2.67e-08!19;UBERON:0001801!4.05e-08!14;UBERON:0000970!7.45e-08!20;UBERON:0002104!1.88e-07!21;UBERON:0001456!1.88e-07!21;UBERON:0004821!1.92e-07!3;UBERON:0003215!1.92e-07!3;UBERON:0002299!1.92e-07!3;UBERON:0006524!1.92e-07!3;UBERON:0008874!1.92e-07!3;UBERON:0002169!1.92e-07!3;UBERON:0004894!1.92e-07!3;UBERON:0003886!3.78e-07!63;UBERON:0002200!7.01e-07!11;UBERON:0006876!7.01e-07!11;UBERON:0000020!9.44e-07!23 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.44e-15;15!UBERON:0004819;1.44e-15;15!UBERON:0001285;1.44e-15;15!UBERON:0007684;1.44e-15;15!UBERON:0004211;7.67e-11;10!UBERON:0009773;7.67e-11;10!UBERON:0001231;7.67e-11;10!UBERON:0004810;7.67e-11;10!UBERON:0002113;5.40e-10;24!UBERON:0011143;5.40e-10;24!UBERON:0004821;1.53e-09;3!UBERON:0007499;1.53e-09;3!UBERON:0003215;1.53e-09;3!UBERON:0010368;1.53e-09;3!UBERON:0009911;1.53e-09;3!UBERON:0002299;1.53e-09;3!UBERON:0006524;1.53e-09;3!UBERON:0008874;1.53e-09;3!UBERON:0002169;1.53e-09;3!UBERON:0004894;1.53e-09;3!UBERON:0001225;2.77e-09;12!UBERON:0008987;2.77e-09;12!UBERON:0000489;2.21e-08;29!UBERON:0006554;4.02e-08;30!UBERON:0001008;4.02e-08;30!UBERON:0001851;1.31e-07;15!UBERON:0000353;1.31e-07;15!UBERON:0009856;1.80e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.44e-15,15;UBERON:0009773,1.44e-15,15;UBERON:0001231,1.44e-15,15;UBERON:0001285,1.44e-15,15;UBERON:0007684,1.44e-15,15;UBERON:0004208,1.44e-15,15;UBERON:0006555,1.22e-14,16;UBERON:0004819,1.22e-14,16;UBERON:0004810,7.67e-11,10;UBERON:0004821,1.30e-09,3;UBERON:0003215,1.30e-09,3;UBERON:0010368,1.30e-09,3;UBERON:0009911,1.30e-09,3;UBERON:0002299,1.30e-09,3;UBERON:0006524,1.30e-09,3;UBERON:0008874,1.30e-09,3;UBERON:0002169,1.30e-09,3;UBERON:0004894,1.30e-09,3;UBERON:0002113,2.82e-09,26;UBERON:0003918,2.82e-09,26;UBERON:0011143,2.82e-09,26;UBERON:0005095,2.82e-09,26;UBERON:0007687,2.82e-09,26;UBERON:0001225,2.89e-09,12;UBERON:0008987,2.89e-09,12;UBERON:0000489,7.02e-08,31;UBERON:0001851,1.35e-07,15;UBERON:0000353,1.35e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.96587149201207,7.6758128476967,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.443458794925128,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.132529768321485,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,0,0,0,0,0,0,0,0.34779121492523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23224539367064,0.784349769176855,1.46139224653261,0.422206515571503,0,0,0,0,0,0.501689773854853,0,0,0.447749509444357,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.03909399843975,0,0,0,0,0,0,0,0.225595660617181,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13843818411917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0,0.415440338029185,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0.579684114443301,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61906694481422,0,0.591424344868181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252332849670158,0,0,0,0,0.275684698604535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr16:3068393..3068407,+ | |||
}} |
Revision as of 01:59, 12 January 2014
Short description: | p@chr16:3068393..3068407, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:3068393..3068407, + |
Coexpression cluster: | C1028_Alveolar_Renal_iPS_teratocarcinoma_H9_HES3GFP_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 1.44e-15 | 15 |
kidney cell | 7.99e-14 | 17 |
kidney epithelial cell | 7.99e-14 | 17 |
kidney tubule cell | 7.67e-11 | 10 |
nephron tubule epithelial cell | 7.67e-11 | 10 |
pneumocyte | 1.30e-09 | 3 |
kidney cortical cell | 2.89e-09 | 12 |
renal cortical epithelial cell | 2.89e-09 | 12 |
epithelial cell of pancreas | 1.49e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.44e-15 | 15 |
renal tubule | 1.44e-15 | 15 |
nephron tubule | 1.44e-15 | 15 |
nephron | 1.44e-15 | 15 |
uriniferous tubule | 1.44e-15 | 15 |
nephrogenic mesenchyme | 1.44e-15 | 15 |
excretory tube | 1.22e-14 | 16 |
kidney epithelium | 1.22e-14 | 16 |
nephron tubule epithelium | 7.67e-11 | 10 |
pulmonary alveolus epithelium | 1.30e-09 | 3 |
alveolus | 1.30e-09 | 3 |
pulmonary lobule | 1.30e-09 | 3 |
lobule | 1.30e-09 | 3 |
alveolus of lung | 1.30e-09 | 3 |
alveolar system | 1.30e-09 | 3 |
pulmonary acinus | 1.30e-09 | 3 |
alveolar sac | 1.30e-09 | 3 |
alveolar wall | 1.30e-09 | 3 |
kidney | 2.82e-09 | 26 |
kidney mesenchyme | 2.82e-09 | 26 |
upper urinary tract | 2.82e-09 | 26 |
kidney rudiment | 2.82e-09 | 26 |
kidney field | 2.82e-09 | 26 |
cortex of kidney | 2.89e-09 | 12 |
renal parenchyma | 2.89e-09 | 12 |
cavitated compound organ | 7.02e-08 | 31 |
cortex | 1.35e-07 | 15 |
parenchyma | 1.35e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 3.58e-26 | 1 |
endocrine pancreas cancer | 3.58e-26 | 1 |
pancreatic endocrine carcinoma | 3.58e-26 | 1 |
pancreatic cancer | 1.49e-07 | 4 |