FFCP PHASE1:Hg19::chr16:2034692..2034713,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2671 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4236 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc002coc.2_5end | |||
|coexpression_cluster_id=C2364 | |||
|description=CAGE_peak_7_at_GFER_5end | |||
|id=chr16:2034692..2034713,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000182;4.86e-18;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.66e-18,12;CL:0000223,6.85e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.87e-30;11!UBERON:0009497;1.94e-25;13!UBERON:0001041;4.84e-11;30!UBERON:0003104;1.14e-10;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000059!3.50e-20!11;UBERON:0000160!2.61e-18!27;UBERON:0004907!4.21e-15!5;UBERON:0005409!9.98e-14!35;UBERON:0001155!6.02e-13!9;UBERON:0001052!3.90e-11!4;UBERON:0004921!6.74e-11!129;UBERON:0004185!6.74e-11!129;UBERON:0001007!2.86e-09!155;UBERON:0001555!2.86e-09!155;UBERON:0007026!2.86e-09!155;UBERON:0004119!4.86e-09!169;UBERON:0000925!4.86e-09!169;UBERON:0006595!4.86e-09!169;UBERON:0001046!3.97e-08!19;UBERON:0009854!7.29e-07!23 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;2.85e-46;17!UBERON:0005409;4.26e-36;22!UBERON:0002108;9.79e-25;4!UBERON:0004921;1.52e-22;33!UBERON:0000059;1.39e-19;11!UBERON:0002107;1.97e-17;19!UBERON:0006925;1.97e-17;19!UBERON:0001155;7.20e-14;9!UBERON:0002423;2.97e-13;25!UBERON:0001007;2.75e-12;81!UBERON:0002365;6.30e-10;31!UBERON:0002330;6.30e-10;31!UBERON:0002368;1.47e-09;33!UBERON:0001555;8.49e-09;54!UBERON:0000922;5.81e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.31e-46,17;UBERON:0005409,6.28e-32,25;UBERON:0002108,8.68e-25,4;UBERON:0004921,2.48e-20,118;UBERON:0000059,1.15e-19,11;UBERON:0002107,1.91e-17,19;UBERON:0006925,1.91e-17,19;UBERON:0008836,1.91e-17,19;UBERON:0001007,2.68e-16,145;UBERON:0001555,2.68e-16,145;UBERON:0007026,2.68e-16,145;UBERON:0008835,4.51e-15,22;UBERON:0003894,4.51e-15,22;UBERON:0004119,1.23e-14,160;UBERON:0000925,1.23e-14,160;UBERON:0006595,1.23e-14,160;UBERON:0009854,2.04e-14,23;UBERON:0001155,5.90e-14,9;UBERON:0007499,2.90e-13,25;UBERON:0009497,2.90e-13,25;UBERON:0000015,2.90e-13,25;UBERON:0002423,2.90e-13,25;UBERON:0006235,2.90e-13,25;UBERON:0004161,2.90e-13,25;UBERON:0009856,9.39e-13,26;UBERON:0011216,1.32e-11,223;UBERON:0003929,2.04e-11,54;UBERON:0002365,1.08e-10,31;UBERON:0002330,1.08e-10,31;UBERON:0002368,1.83e-09,35;UBERON:0002530,9.21e-08,59;UBERON:0000949,2.41e-07,45;UBERON:0005911,2.53e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,1.10689594688802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,1.99052386215701,1.50377859655677,6.72133159426988,0,0,0.104421949505455,0,0,0,0,0,0,0,2.41981432097328,0,0.063186579628488,0.150323419414493,0.103688191397247,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,2.9937609276745,3.37905019362782,2.83094884187577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560544326627578,2.73947616152849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243835849964539,0,0,0,0,0,0,0,0,0,0,4.93914611890846,6.55678681511872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p7@GFER | |||
}} |
Revision as of 01:50, 12 January 2014
Short description: | p7@GFER |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_GFER_5end |
Coexpression cluster: | C2364_small_rectum_colon_hepatocellular_duodenum_temporal_umbilical |
Association with transcript: | 0bp_to_uc002coc.2_5end |
EntrezGene: | GFER |
HGNC: | 4236 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.66e-18 | 12 |
endodermal cell | 6.85e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.31e-46 | 17 |
gastrointestinal system | 6.28e-32 | 25 |
small intestine | 8.68e-25 | 4 |
subdivision of digestive tract | 2.48e-20 | 118 |
large intestine | 1.15e-19 | 11 |
liver | 1.91e-17 | 19 |
digestive gland | 1.91e-17 | 19 |
liver bud | 1.91e-17 | 19 |
digestive system | 2.68e-16 | 145 |
digestive tract | 2.68e-16 | 145 |
primitive gut | 2.68e-16 | 145 |
hepatic diverticulum | 4.51e-15 | 22 |
liver primordium | 4.51e-15 | 22 |
endoderm-derived structure | 1.23e-14 | 160 |
endoderm | 1.23e-14 | 160 |
presumptive endoderm | 1.23e-14 | 160 |
digestive tract diverticulum | 2.04e-14 | 23 |
colon | 5.90e-14 | 9 |
epithelial sac | 2.90e-13 | 25 |
epithelium of foregut-midgut junction | 2.90e-13 | 25 |
anatomical boundary | 2.90e-13 | 25 |
hepatobiliary system | 2.90e-13 | 25 |
foregut-midgut junction | 2.90e-13 | 25 |
septum transversum | 2.90e-13 | 25 |
sac | 9.39e-13 | 26 |
organ system subdivision | 1.32e-11 | 223 |
gut epithelium | 2.04e-11 | 54 |
exocrine gland | 1.08e-10 | 31 |
exocrine system | 1.08e-10 | 31 |
endocrine gland | 1.83e-09 | 35 |
gland | 9.21e-08 | 59 |
endocrine system | 2.41e-07 | 45 |
endo-epithelium | 2.53e-07 | 82 |