FFCP PHASE1:Hg19::chr14:23395623..23395650,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10419 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10894 | |||
|TSSclassifier=strong | |||
|UniProt=G3V5T6 | |||
|association_with_transcript=14bp_to_ENST00000556043_5end | |||
|description=CAGE_peak_2_at_PRMT5_5end | |||
|id=chr14:23395623..23395650,- | |||
|ontology_enrichment_celltype=CL:0000066!5.67e-26!254;CL:0002076!9.52e-18!43;CL:0002368!5.76e-13!13;CL:0000223!1.56e-11!59;CL:0002159!1.06e-10!13;CL:0002202!2.43e-08!9;CL:0002632!2.43e-08!9;CL:0000063!6.09e-07!578;CL:0002251!6.69e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002368;9.69e-21;13!CL:0002202;9.02e-19;9!CL:0002632;9.02e-19;9!CL:0002159;2.04e-15;14!CL:0002076;4.98e-15;42!CL:0002621;1.44e-12;3!CL:0002328;1.08e-11;3!CL:0000307;1.50e-11;3!CL:0002166;1.70e-11;3!CL:0002541;6.53e-11;3!CL:0000349;7.79e-11;19!CL:0000240;3.04e-10;6!CL:0000311;3.04e-10;6!CL:0000079;3.04e-10;6!CL:0000237;3.04e-10;6!CL:0002327;7.15e-09;4!CL:0000312;1.30e-07;5!CL:0002077;1.45e-07;34!CL:0000362;7.99e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.16e-20,42;CL:0002368,1.26e-20,13;CL:0000066,8.65e-20,253;CL:0002202,8.79e-19,9;CL:0002632,8.79e-19,9;CL:0002159,1.72e-15,14;CL:0000223,8.18e-14,58;CL:0002621,1.44e-12,3;CL:0002328,8.88e-12,3;CL:0002166,1.28e-11,3;CL:0000068,1.58e-11,3;CL:0000069,1.58e-11,3;CL:0000307,1.58e-11,3;CL:0000377,1.58e-11,3;CL:0002541,7.78e-11,3;CL:0000349,9.16e-11,19;CL:0000240,3.01e-10,6;CL:0000311,3.01e-10,6;CL:0000079,3.01e-10,6;CL:0000237,3.01e-10,6;CL:0000036,3.01e-10,6;CL:0000357,3.01e-10,6;CL:0000114,3.01e-10,6;CL:0002327,5.85e-09,4;CL:0002077,1.00e-08,34;CL:0000312,1.38e-07,5;CL:0000362,8.57e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000377;1.50e-11;3!CL:0000357;3.04e-10;6!CL:0000114;3.04e-10;6!CL:0000223;8.94e-08;58 | |||
|ontology_enrichment_disease=DOID:305!1.52e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!7.88e-17!169;UBERON:0000925!7.88e-17!169;UBERON:0006595!7.88e-17!169;UBERON:0001004!3.22e-14!72;UBERON:0000065!2.79e-13!53;UBERON:0005631!1.57e-11!14;UBERON:0000158!1.57e-11!14;UBERON:0000072!3.37e-11!46;UBERON:0001007!2.51e-10!155;UBERON:0001555!2.51e-10!155;UBERON:0007026!2.51e-10!155;UBERON:0000077!4.91e-10!130;UBERON:0008947!1.26e-09!38;UBERON:0003258!1.26e-09!38;UBERON:0007196!6.18e-09!14;UBERON:0001558!6.18e-09!14;UBERON:0005911!1.17e-08!82;UBERON:0003124!9.04e-08!7;UBERON:0005153!1.36e-07!37;UBERON:0005157!2.25e-07!51;UBERON:0005178!2.30e-07!34;UBERON:0002224!2.30e-07!34;UBERON:0000064!3.92e-07!219;UBERON:0005181!4.93e-07!35;UBERON:0004921!6.90e-07!129;UBERON:0004185!6.90e-07!129;UBERON:0001041!7.38e-07!98;UBERON:0001708!9.66e-07!4;UBERON:0001704!9.66e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.44e-12;3!UBERON:0005631;2.07e-12;10!UBERON:0000158;2.07e-12;10!UBERON:0004807;4.31e-12;22!UBERON:0004815;1.08e-11;3!UBERON:0002031;1.08e-11;3!UBERON:0003124;6.53e-11;3!UBERON:0000920;6.53e-11;3!UBERON:0007196;7.41e-11;15!UBERON:0001558;7.41e-11;15!UBERON:0001911;7.15e-09;4!UBERON:0001708;9.98e-09;4!UBERON:0008895;9.98e-09;4!UBERON:0000478;2.66e-08;24!UBERON:0005178;2.85e-08;34!UBERON:0002224;2.85e-08;34!UBERON:0005181;6.93e-08;35!UBERON:0005911;7.27e-08;36!UBERON:0000486;1.23e-07;12!UBERON:0002185;3.58e-07;5!UBERON:0011159;4.66e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.34e-15,14;UBERON:0000158,4.34e-15,14;UBERON:0001949,1.44e-12,3;UBERON:0003124,2.73e-12,7;UBERON:0004815,8.88e-12,3;UBERON:0002031,8.88e-12,3;UBERON:0005153,1.74e-11,37;UBERON:0007196,7.30e-11,15;UBERON:0001558,7.30e-11,15;UBERON:0000920,7.78e-11,3;UBERON:0005157,4.98e-10,47;UBERON:0004119,1.80e-09,160;UBERON:0000925,1.80e-09,160;UBERON:0006595,1.80e-09,160;UBERON:0004807,3.72e-09,28;UBERON:0001911,5.85e-09,4;UBERON:0005333,5.85e-09,4;UBERON:0008425,5.85e-09,4;UBERON:0005311,5.85e-09,4;UBERON:0001708,8.07e-09,4;UBERON:0008895,8.07e-09,4;UBERON:0001004,9.32e-09,74;UBERON:0005178,1.00e-08,34;UBERON:0002224,1.00e-08,34;UBERON:0005181,2.02e-08,35;UBERON:0000065,2.78e-08,54;UBERON:0000478,3.01e-08,24;UBERON:0004923,1.36e-07,66;UBERON:0002185,3.19e-07,5;UBERON:0011159,3.94e-07,5;UBERON:0000072,5.17e-07,47 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,1.22866968250754,0.697801167972428,0.873765488520689,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,3.614471025339,4.06729411183466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0.103052529238439,0.257640540045629,0,0,0,0,0,0,0,0,0,12.1754337492877,7.9096374971342,7.7437240755031,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0.241011029883482,0.110293972732394,0.217879444092406,0,0,0.392442930250692,0.38474715694639,0,0,0,0,0,0,0,0,0.122988438543114,0,4.06076056011915,6.74410519545717,15.6825196962144,1.574003567695,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81201501960331,4.19955320497149,2.69372684760534,4.38836761243957,6.68458058582112,1.91691339582606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.289562613335158,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,3.33440328590885,0,2.41912234663744,0,0.153461973288062,0,0,0,0.160853921143607,1.48418066444991,0,0.177561725313127,0,0,0,0,2.20557117333613,4.78821142466661,0,0.182091168006717,0.131124414959424,0,0.924184045252977,0,0,0,0,0,0,0,0.270946437543853,0,3.05851527654046,0.831076008928724,0.447749509444357,0,0,0,0,0,0,0,0,0.574265537996172,1.30012049207304,0,0,0,0,0,0,0,0.0852266274161009,0,2.14870389969272,2.11409074101617,0.638063562472921,0.6069466851333,0.464845549297286,0,0,0,0,0,0,0.143124886741991,0,0,0,0.255897791311334,0,0,0,0,0,0,0.404364963146632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1753297199419,2.68120910214315,3.26672954583968,0.0941438007767792,2.15252686335615,0,0.443430153536676,2.52695740227655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.0859245995237,0.296964680832639,17.200999317557,0,0,0.222617410045812,0,0,0,0,0,0.102268682502155,0.123084805461069,0.311039587661807,0.898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0.557694977114413,0.0769502585037971,0,0,0,0,3.19001159731919,1.00757352742049,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0.138674673013139,3.64475450503775,0.979923974143776,1.13176968554523,0,0,0,0,0,3.4916045935831,0.353024506766001,0,0,0,0,0.586654148204409,0.160317640503067,0.213452994739353,0,0.144090417154106,0,0,4.60975353562079,0.372757606696298,0.942776138467182,0.271808412147228,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0.422401346077626,2.68931008999267,5.56554072226391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0.265841714557995,0.521745061811734,0,0.380805212168795,0.406870733204662,0,0.107410557042488,0,0.398095888698616,3.20022211730523,0,0,0,0.770479321629213,0.857766365499703,0,0,0,0.244736704506468,0,1.54400723580486,0,0.883445729729405,0.964570191354574,0,0,0,0,0,0,0,0,0,0,22.6103971993731,0,0,0,0,0,2.37795163123056,3.11038630016486,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0.252071696221718,0,0,0,0.0981477185010256,0,0.733714394086716,0,0,0,0,0,0,0,0,0.655087670040387,2.51355346568977,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532214220975833,0,0,0,0,0.236387681767936,1.55723962648897,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0.207216164163037,0.17071847709395,0,0,0.118332000730565,0.340853619036631,0,0,0,0,0,1.07965256976767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235676547101626,0,0,0,0.339854229375634,0,0,0,0,4.2347384605883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98527574661373,0,0,0,0.112131862580613,0,0,0.435433495793923,3.76456631193809,1.48174516632093,0.0717222053926763,0.332660356546013,0,0.213454691755431,0,0,0,0,0,0,0,0 | |||
|short_description=p2@PRMT5 | |||
}} |
Revision as of 19:12, 11 January 2014
Short description: | p2@PRMT5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PRMT5_5end |
Coexpression cluster: | NA |
Association with transcript: | 14bp_to_ENST00000556043_5end |
EntrezGene: | PRMT5 |
HGNC: | 10894 |
UniProt: | G3V5T6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.16e-20 | 42 |
respiratory epithelial cell | 1.26e-20 | 13 |
epithelial cell | 8.65e-20 | 253 |
epithelial cell of tracheobronchial tree | 8.79e-19 | 9 |
epithelial cell of lower respiratory tract | 8.79e-19 | 9 |
general ecto-epithelial cell | 1.72e-15 | 14 |
endodermal cell | 8.18e-14 | 58 |
gingival epithelial cell | 1.44e-12 | 3 |
bronchial epithelial cell | 8.88e-12 | 3 |
epithelial cell of Malassez | 1.28e-11 | 3 |
duct epithelial cell | 1.58e-11 | 3 |
branched duct epithelial cell | 1.58e-11 | 3 |
tracheal epithelial cell | 1.58e-11 | 3 |
tracheoblast | 1.58e-11 | 3 |
chorionic membrane mesenchymal stem cell | 7.78e-11 | 3 |
extraembryonic cell | 9.16e-11 | 19 |
stratified squamous epithelial cell | 3.01e-10 | 6 |
keratin accumulating cell | 3.01e-10 | 6 |
stratified epithelial cell | 3.01e-10 | 6 |
keratinizing barrier epithelial cell | 3.01e-10 | 6 |
epithelial fate stem cell | 3.01e-10 | 6 |
stratified epithelial stem cell | 3.01e-10 | 6 |
surface ectodermal cell | 3.01e-10 | 6 |
mammary gland epithelial cell | 5.85e-09 | 4 |
ecto-epithelial cell | 1.00e-08 | 34 |
keratinocyte | 1.38e-07 | 5 |
epidermal cell | 8.57e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.34e-15 | 14 |
membranous layer | 4.34e-15 | 14 |
gingival epithelium | 1.44e-12 | 3 |
chorion | 2.73e-12 | 7 |
lower respiratory tract epithelium | 8.88e-12 | 3 |
epithelium of bronchus | 8.88e-12 | 3 |
epithelial bud | 1.74e-11 | 37 |
tracheobronchial tree | 7.30e-11 | 15 |
lower respiratory tract | 7.30e-11 | 15 |
egg chorion | 7.78e-11 | 3 |
epithelial fold | 4.98e-10 | 47 |
endoderm-derived structure | 1.80e-09 | 160 |
endoderm | 1.80e-09 | 160 |
presumptive endoderm | 1.80e-09 | 160 |
respiratory system epithelium | 3.72e-09 | 28 |
mammary gland | 5.85e-09 | 4 |
mammary bud | 5.85e-09 | 4 |
mammary ridge | 5.85e-09 | 4 |
mammary placode | 5.85e-09 | 4 |
jaw skeleton | 8.07e-09 | 4 |
splanchnocranium | 8.07e-09 | 4 |
respiratory system | 9.32e-09 | 74 |
thoracic cavity element | 1.00e-08 | 34 |
thoracic cavity | 1.00e-08 | 34 |
thoracic segment organ | 2.02e-08 | 35 |
respiratory tract | 2.78e-08 | 54 |
extraembryonic structure | 3.01e-08 | 24 |
organ component layer | 1.36e-07 | 66 |
bronchus | 3.19e-07 | 5 |
primary subdivision of cranial skeletal system | 3.94e-07 | 5 |
segment of respiratory tract | 5.17e-07 | 47 |