FFCP PHASE1:Hg19::chr13:28494180..28494196,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3651 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6107 | |||
|TSSclassifier=strong | |||
|UniProt=P52945 | |||
|association_with_transcript=12bp_to_NM_000209,uc001urt.2_5end | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_3_at_PDX1_5end | |||
|id=chr13:28494180..28494196,+ | |||
|ontology_enrichment_celltype=CL:0000080!1.84e-15!6 | |||
|ontology_enrichment_celltype_v019=CL:0002535;1.21e-13;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,1.21e-13,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0060060!4.58e-11!1;DOID:0060061!4.58e-11!1;DOID:8691!4.58e-11!1 | |||
|ontology_enrichment_disease_v019=DOID:0060060;7.62e-26;1!DOID:0060061;7.62e-26;1!DOID:8691;7.62e-26;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,9.79e-26,1;DOID:0060061,9.79e-26,1;DOID:8691,9.79e-26,1 | |||
|ontology_enrichment_uberon=UBERON:0002110!2.06e-13!3;UBERON:0006242!2.06e-13!3;UBERON:0002331!1.73e-09!10;UBERON:0000358!1.73e-09!10;UBERON:0000307!1.73e-09!10;UBERON:0000091!1.73e-09!10;UBERON:0000087!1.73e-09!10;UBERON:0007806!1.73e-09!10;UBERON:0008780!1.73e-09!10;UBERON:0005728!1.73e-09!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;3.52e-23;10!UBERON:0000178;1.02e-15;15!UBERON:0000179;1.02e-15;15!UBERON:0000463;1.02e-15;15!UBERON:0006955;1.21e-13;2!UBERON:0004801;1.21e-13;2!UBERON:0000922;2.07e-11;49!UBERON:0000478;4.35e-10;24!UBERON:0002114;1.81e-09;2!UBERON:0002390;8.43e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,3.52e-23,10;UBERON:0000358,3.52e-23,10;UBERON:0000307,3.52e-23,10;UBERON:0000091,3.52e-23,10;UBERON:0000087,3.52e-23,10;UBERON:0007010,3.52e-23,10;UBERON:0007806,3.52e-23,10;UBERON:0008780,3.52e-23,10;UBERON:0005728,3.52e-23,10;UBERON:0000178,1.02e-15,15;UBERON:0000179,1.02e-15,15;UBERON:0000463,1.02e-15,15;UBERON:0006955,1.21e-13,2;UBERON:0004801,1.21e-13,2;UBERON:0000478,4.35e-10,24;UBERON:0002114,1.81e-09,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.27512572210559,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0,17.4947465921567,11.9857020778108,12.4262119911492,0,0,0,0,0,0,0,3.62972148145992,0,0,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0.213452994739353,0,0,0,0.343189995723929,0,0,0,0,0,0,0,0,0,0,0,4.73197237702766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19979833367888,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0.617393264863557,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.645134202577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@PDX1 | |||
}} |
Revision as of 17:05, 11 January 2014
Short description: | p3@PDX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PDX1_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | 12bp_to_NM_000209, uc001urt.2_5end |
EntrezGene: | PDX1 |
HGNC: | 6107 |
UniProt: | P52945 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 1.21e-13 | 2 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 3.52e-23 | 10 |
blastocyst | 3.52e-23 | 10 |
blastula | 3.52e-23 | 10 |
bilaminar disc | 3.52e-23 | 10 |
inner cell mass | 3.52e-23 | 10 |
cleaving embryo | 3.52e-23 | 10 |
connecting stalk | 3.52e-23 | 10 |
inner cell mass derived epiblast | 3.52e-23 | 10 |
extraembryonic mesoderm | 3.52e-23 | 10 |
blood | 1.02e-15 | 15 |
haemolymphatic fluid | 1.02e-15 | 15 |
organism substance | 1.02e-15 | 15 |
uterine epithelium | 1.21e-13 | 2 |
cervix epithelium | 1.21e-13 | 2 |
extraembryonic structure | 4.35e-10 | 24 |
duodenum | 1.81e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 9.79e-26 | 1 |
cutaneous T cell lymphoma | 9.79e-26 | 1 |
mycosis fungoides | 9.79e-26 | 1 |