FFCP PHASE1:Hg19::chr9:137735933..137735964,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C396|description=CAGE_peak_at_chr9:137735933..137735964,+|id=chr9:137735933..137735964,+|ontology_enrichment_celltype=CL:0000055!2.54e-24!180;CL:0000057!1.15e-15!75;CL:0002334!3.84e-09!12;CL:0000144!4.74e-09!625;CL:0002371!5.55e-09!591;CL:0000680!7.23e-08!57;CL:0000056!7.23e-08!57;CL:0000355!7.23e-08!57;CL:0000048!1.59e-07!430;CL:0000183!2.48e-07!59;CL:0000187!4.37e-07!54;CL:0000548!4.49e-07!679;CL:0000004!4.49e-07!679;CL:0000255!4.49e-07!679;CL:0000012!5.19e-07!682;CL:0002570!7.37e-07!8;CL:0000499!7.41e-07!27;CL:0000723!7.53e-07!436|ontology_enrichment_celltype_v019=CL:0000349;1.27e-14;19!CL:0000134;3.58e-13;55!CL:0000048;2.27e-12;58!CL:0000723;9.18e-12;61!CL:0002620;2.87e-11;23!CL:0002334;3.72e-11;12!CL:0002570;4.76e-10;8!CL:0002320;2.26e-08;188!CL:0000034;4.58e-08;69!CL:0000057;1.48e-07;73!CL:0002580;5.83e-07;3!CL:0002615;7.72e-07;3|ontology_enrichment_celltype_v019_2=CL:0000057,1.22e-19,76;CL:0000134,5.99e-15,354;CL:0002320,7.71e-15,361;CL:0000048,1.39e-14,427;CL:0000349,2.72e-14,19;CL:0000723,4.93e-14,433;CL:0000034,2.51e-13,441;CL:0000219,1.10e-11,386;CL:0002334,3.67e-11,12;CL:0002620,4.16e-11,23;CL:0002570,4.50e-10,8;CL:0000136,1.67e-08,15;CL:0002580,5.73e-07,3;CL:0002615,7.58e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!6.02e-07!14|ontology_enrichment_disease_v019=DOID:17;1.10e-08;5!DOID:450;1.10e-08;5!DOID:66;1.10e-08;5!DOID:423;1.10e-08;5!DOID:0080000;1.10e-08;5!DOID:11722;1.10e-08;5|ontology_enrichment_disease_v019_2=DOID:17,1.08e-08,5;DOID:450,1.08e-08,5;DOID:66,1.08e-08,5;DOID:423,1.08e-08,5;DOID:0080000,1.08e-08,5;DOID:11722,1.08e-08,5|ontology_enrichment_uberon=UBERON:0000478!1.07e-09!24;UBERON:0005631!5.48e-09!14;UBERON:0000158!5.48e-09!14;UBERON:0001134!6.68e-08!61;UBERON:0002036!6.68e-08!61;UBERON:0003082!6.68e-08!61;UBERON:0002385!1.19e-07!63;UBERON:0001015!1.19e-07!63;UBERON:0000383!1.19e-07!63;UBERON:0001013!4.53e-07!14;UBERON:0004923!5.28e-07!57;UBERON:0000914!7.48e-07!83;UBERON:0002329!7.48e-07!83;UBERON:0003077!7.48e-07!83;UBERON:0003059!7.48e-07!83;UBERON:0007282!7.48e-07!83;UBERON:0009618!7.48e-07!83;UBERON:0007285!7.48e-07!83|ontology_enrichment_uberon_v019=UBERON:0000478;8.57e-13;24!UBERON:0003688;6.54e-12;6!UBERON:0002358;6.54e-12;6!UBERON:0003684;6.54e-12;6!UBERON:0001178;6.54e-12;6!UBERON:0001013;1.07e-10;14!UBERON:0004457;9.01e-10;9!UBERON:0000042;9.01e-10;9!UBERON:0002384;3.25e-08;198!UBERON:0005631;4.26e-07;10!UBERON:0000158;4.26e-07;10!UBERON:0003104;9.97e-07;7!UBERON:0009142;9.97e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.54e-15,371;UBERON:0000478,1.62e-12,24;UBERON:0003688,6.73e-12,6;UBERON:0002358,6.73e-12,6;UBERON:0003684,6.73e-12,6;UBERON:0001178,6.73e-12,6;UBERON:0001013,8.08e-11,14;UBERON:0005631,8.77e-10,14;UBERON:0000158,8.77e-10,14;UBERON:0002199,3.69e-08,46;UBERON:0002416,3.69e-08,46;UBERON:0002097,1.68e-07,41;UBERON:0004457,4.59e-07,12;UBERON:0000042,4.59e-07,12;UBERON:0004923,8.73e-07,66|phase1_expression=2.18014055124668,5.1384125733836,4.79244973926302,7.00513088471913,4.46961094427288,2.61701557230111,2.53299878168311,0,0.261185628199839,0.245733936501509,0.697801167972428,0.655324116390517,1.58260186937072,0.37129905888014,0.331397375727916,0,0.602694528023977,1.46062018077475,0.487932798790507,0.492484232307152,0.408001382488506,0.940364164434263,0.572471974262113,0.136874425072884,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.511450247374121,2.89151321907653,0.50133791063589,2.462390822334,8.74814541756209,8.75942766544745,0.189069634328136,0.443458794925128,0.527008714158756,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0.56530794192401,1.25849830862972,0.275118041940067,0,0,0,0,0,0,0,0.367663080345869,0,0,0,0,1.53316637465883,0,0,0,0,0,6.46063537203914,3.03913227994991,0.926864265692532,7.17091551872034,0,0.560677600142307,3.20246987189115,4.19334832309172,0,0.134710672069688,0.326923806226917,2.72443369760877,2.88087962239999,0,0,0,0,0.117434498643765,0,0,0.204154171254893,0,0.103325781175765,0,1.23633464639278,0,0.718618141816238,0,0.125118519871964,0.277064115484183,0.438977620880838,0,0.45071417671979,1.02088964844019,3.58779271377724,2.56268866582281,2.96704661623387,2.70081986475962,1.03052529238439,3.09168648054755,1.30281799432113,2.36286865137773,2.53336213419116,2.77677151668526,1.47279837827679,2.10139873864455,3.55009592516614,1.10827308050404,0.67824236924195,0,0,0,0,0,0.232387885739037,0,0,0.36497735907583,0,1.92972281457866,0,0,0,0.236613600079688,0.337169380156203,0.964044119533928,0.330881918197182,0.435758888184812,0.23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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C396 | |||
|description=CAGE_peak_at_chr9:137735933..137735964,+ | |||
|id=chr9:137735933..137735964,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.54e-24!180;CL:0000057!1.15e-15!75;CL:0002334!3.84e-09!12;CL:0000144!4.74e-09!625;CL:0002371!5.55e-09!591;CL:0000680!7.23e-08!57;CL:0000056!7.23e-08!57;CL:0000355!7.23e-08!57;CL:0000048!1.59e-07!430;CL:0000183!2.48e-07!59;CL:0000187!4.37e-07!54;CL:0000548!4.49e-07!679;CL:0000004!4.49e-07!679;CL:0000255!4.49e-07!679;CL:0000012!5.19e-07!682;CL:0002570!7.37e-07!8;CL:0000499!7.41e-07!27;CL:0000723!7.53e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.27e-14;19!CL:0000134;3.58e-13;55!CL:0000048;2.27e-12;58!CL:0000723;9.18e-12;61!CL:0002620;2.87e-11;23!CL:0002334;3.72e-11;12!CL:0002570;4.76e-10;8!CL:0002320;2.26e-08;188!CL:0000034;4.58e-08;69!CL:0000057;1.48e-07;73!CL:0002580;5.83e-07;3!CL:0002615;7.72e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.22e-19,76;CL:0000134,5.99e-15,354;CL:0002320,7.71e-15,361;CL:0000048,1.39e-14,427;CL:0000349,2.72e-14,19;CL:0000723,4.93e-14,433;CL:0000034,2.51e-13,441;CL:0000219,1.10e-11,386;CL:0002334,3.67e-11,12;CL:0002620,4.16e-11,23;CL:0002570,4.50e-10,8;CL:0000136,1.67e-08,15;CL:0002580,5.73e-07,3;CL:0002615,7.58e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!6.02e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:17;1.10e-08;5!DOID:450;1.10e-08;5!DOID:66;1.10e-08;5!DOID:423;1.10e-08;5!DOID:0080000;1.10e-08;5!DOID:11722;1.10e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.08e-08,5;DOID:450,1.08e-08,5;DOID:66,1.08e-08,5;DOID:423,1.08e-08,5;DOID:0080000,1.08e-08,5;DOID:11722,1.08e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000478!1.07e-09!24;UBERON:0005631!5.48e-09!14;UBERON:0000158!5.48e-09!14;UBERON:0001134!6.68e-08!61;UBERON:0002036!6.68e-08!61;UBERON:0003082!6.68e-08!61;UBERON:0002385!1.19e-07!63;UBERON:0001015!1.19e-07!63;UBERON:0000383!1.19e-07!63;UBERON:0001013!4.53e-07!14;UBERON:0004923!5.28e-07!57;UBERON:0000914!7.48e-07!83;UBERON:0002329!7.48e-07!83;UBERON:0003077!7.48e-07!83;UBERON:0003059!7.48e-07!83;UBERON:0007282!7.48e-07!83;UBERON:0009618!7.48e-07!83;UBERON:0007285!7.48e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;8.57e-13;24!UBERON:0003688;6.54e-12;6!UBERON:0002358;6.54e-12;6!UBERON:0003684;6.54e-12;6!UBERON:0001178;6.54e-12;6!UBERON:0001013;1.07e-10;14!UBERON:0004457;9.01e-10;9!UBERON:0000042;9.01e-10;9!UBERON:0002384;3.25e-08;198!UBERON:0005631;4.26e-07;10!UBERON:0000158;4.26e-07;10!UBERON:0003104;9.97e-07;7!UBERON:0009142;9.97e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.54e-15,371;UBERON:0000478,1.62e-12,24;UBERON:0003688,6.73e-12,6;UBERON:0002358,6.73e-12,6;UBERON:0003684,6.73e-12,6;UBERON:0001178,6.73e-12,6;UBERON:0001013,8.08e-11,14;UBERON:0005631,8.77e-10,14;UBERON:0000158,8.77e-10,14;UBERON:0002199,3.69e-08,46;UBERON:0002416,3.69e-08,46;UBERON:0002097,1.68e-07,41;UBERON:0004457,4.59e-07,12;UBERON:0000042,4.59e-07,12;UBERON:0004923,8.73e-07,66 | |||
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| |||
|short_description=p@chr9:137735933..137735964,+ | |||
}} |
Revision as of 08:06, 14 September 2013
Short description: | p@chr9:137735933..137735964, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:137735933..137735964, + |
Coexpression cluster: | C396_Mesenchymal_Chondrocyte_Smooth_Preadipocyte_Placental_Fibroblast_Hepatic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.22e-19 | 76 |
mesenchymal cell | 5.99e-15 | 354 |
connective tissue cell | 7.71e-15 | 361 |
multi fate stem cell | 1.39e-14 | 427 |
extraembryonic cell | 2.72e-14 | 19 |
somatic stem cell | 4.93e-14 | 433 |
stem cell | 2.51e-13 | 441 |
motile cell | 1.10e-11 | 386 |
preadipocyte | 3.67e-11 | 12 |
skin fibroblast | 4.16e-11 | 23 |
mesenchymal stem cell of adipose | 4.50e-10 | 8 |
fat cell | 1.67e-08 | 15 |
preadipocyte of the breast | 5.73e-07 | 3 |
adipocyte of omentum tissue | 7.58e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.54e-15 | 371 |
extraembryonic structure | 1.62e-12 | 24 |
omentum | 6.73e-12 | 6 |
peritoneum | 6.73e-12 | 6 |
abdominal cavity | 6.73e-12 | 6 |
visceral peritoneum | 6.73e-12 | 6 |
adipose tissue | 8.08e-11 | 14 |
extraembryonic membrane | 8.77e-10 | 14 |
membranous layer | 8.77e-10 | 14 |
integument | 3.69e-08 | 46 |
integumental system | 3.69e-08 | 46 |
skin of body | 1.68e-07 | 41 |
cavity lining | 4.59e-07 | 12 |
serous membrane | 4.59e-07 | 12 |
organ component layer | 8.73e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.08e-08 | 5 |
myotonic disease | 1.08e-08 | 5 |
muscle tissue disease | 1.08e-08 | 5 |
myopathy | 1.08e-08 | 5 |
muscular disease | 1.08e-08 | 5 |
myotonic dystrophy | 1.08e-08 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.