FFCP PHASE1:Hg19::chr3:188889775..188889786,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=285386|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24759|TSSclassifier=S|UniProt=Q6ZUI0|association_with_transcript=12bp_to_ENST00000345063,NM_198485,uc003frw.1_5end|coexpression_cluster_id=C629|description=CAGE_peak_13_at_TPRG1_5end|id=chr3:188889775..188889786,+|ontology_enrichment_celltype=CL:0002537!1.55e-12!5|ontology_enrichment_celltype_v019=CL:0002537;3.06e-36;5!CL:0000349;4.51e-10;19|ontology_enrichment_celltype_v019_2=CL:0002537,2.55e-36,5;CL:0000349,4.30e-10,19|ontology_enrichment_development_v019=UBERON:0009143;1.69e-21;1!UBERON:0008814;2.88e-11;2!UBERON:0010056;2.88e-11;2|ontology_enrichment_disease=DOID:3151!7.26e-08!1;DOID:3149!7.26e-08!1|ontology_enrichment_disease_v019=DOID:3151;6.98e-21;1!DOID:3149;6.98e-21;1!DOID:3451;3.89e-11;2!DOID:4159;3.89e-11;2!DOID:0060122;3.89e-11;2|ontology_enrichment_disease_v019_2=DOID:3151,7.72e-21,1;DOID:3149,7.72e-21,1;DOID:3451,4.09e-11,2;DOID:4159,4.09e-11,2;DOID:0060122,4.09e-11,2|ontology_enrichment_uberon=UBERON:0001042!5.85e-16!10;UBERON:0009145!5.85e-16!10;UBERON:0000974!1.48e-15!10;UBERON:0006562!1.72e-14!11;UBERON:0000341!9.23e-14!2;UBERON:0005631!2.43e-11!14;UBERON:0000158!2.43e-11!14;UBERON:0001723!1.66e-09!3;UBERON:0001033!1.66e-09!3;UBERON:0010056!1.66e-09!3;UBERON:0000305!4.36e-09!7;UBERON:0001557!2.72e-08!19;UBERON:0002372!4.57e-08!1;UBERON:0001961!4.57e-08!1;UBERON:0001744!4.57e-08!1;UBERON:0001735!4.57e-08!1;UBERON:0004871!5.28e-08!8;UBERON:0007029!8.28e-08!1;UBERON:0006834!1.69e-07!1;UBERON:0000014!2.04e-07!4;UBERON:0000166!2.55e-07!21;UBERON:0002370!2.80e-07!4;UBERON:0005058!2.80e-07!4;UBERON:0009113!2.80e-07!4;UBERON:0003295!2.80e-07!4;UBERON:0005562!2.80e-07!4;UBERON:0008814!5.78e-07!15;UBERON:0005795!6.10e-07!22|ontology_enrichment_uberon_v019=UBERON:0000305;3.93e-26;7!UBERON:0002372;1.69e-21;1!UBERON:0001961;1.69e-21;1!UBERON:0001744;1.69e-21;1!UBERON:0001042;1.69e-21;1!UBERON:0001735;1.69e-21;1!UBERON:0005631;1.58e-18;10!UBERON:0000158;1.58e-18;10!UBERON:0006562;1.92e-11;2!UBERON:0000341;2.88e-11;2!UBERON:0003127;3.89e-11;2!UBERON:0000478;4.25e-08;24!UBERON:0001043;4.68e-08;3!UBERON:0001723;6.13e-08;3!UBERON:0001033;6.13e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0000305,3.45e-26,7;UBERON:0004871,5.13e-23,8;UBERON:0002372,1.88e-21,1;UBERON:0001961,1.88e-21,1;UBERON:0001744,1.88e-21,1;UBERON:0001735,1.88e-21,1;UBERON:0005631,1.82e-13,14;UBERON:0000158,1.82e-13,14;UBERON:0000341,2.73e-11,2;UBERON:0003127,4.52e-11,2;UBERON:0001042,5.80e-09,10;UBERON:0009145,5.80e-09,10;UBERON:0006562,3.14e-08,11;UBERON:0000478,4.10e-08,24;UBERON:0001043,4.52e-08,3;UBERON:0009143,4.52e-08,3;UBERON:0001723,6.34e-08,3;UBERON:0001033,6.34e-08,3;UBERON:0010056,6.34e-08,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0.473447805734733,0,0.111410456885174,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,3.34242278632766,1.48482340416319,3.37876772309155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.697118721393016,1.30815439456455,0,0,0,0,0.957003479195758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.72235197281675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0063040627978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98527574661373,0.23806443146374,0.710478008196067,0.620747142958579,0,0,0,2.8303177226605,0.342233301085281,5.25346013513783,1.00411087549747,0,0,0,0,0,0,0.244482888365733,0.813792356631477,0,0,0|short_description=p13@TPRG1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=285386 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24759 | |||
|TSSclassifier=S | |||
|UniProt=Q6ZUI0 | |||
|association_with_transcript=12bp_to_ENST00000345063,NM_198485,uc003frw.1_5end | |||
|coexpression_cluster_id=C629 | |||
|description=CAGE_peak_13_at_TPRG1_5end | |||
|id=chr3:188889775..188889786,+ | |||
|ontology_enrichment_celltype=CL:0002537!1.55e-12!5 | |||
|ontology_enrichment_celltype_v019=CL:0002537;3.06e-36;5!CL:0000349;4.51e-10;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002537,2.55e-36,5;CL:0000349,4.30e-10,19 | |||
|ontology_enrichment_development_v019=UBERON:0009143;1.69e-21;1!UBERON:0008814;2.88e-11;2!UBERON:0010056;2.88e-11;2 | |||
|ontology_enrichment_disease=DOID:3151!7.26e-08!1;DOID:3149!7.26e-08!1 | |||
|ontology_enrichment_disease_v019=DOID:3151;6.98e-21;1!DOID:3149;6.98e-21;1!DOID:3451;3.89e-11;2!DOID:4159;3.89e-11;2!DOID:0060122;3.89e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,7.72e-21,1;DOID:3149,7.72e-21,1;DOID:3451,4.09e-11,2;DOID:4159,4.09e-11,2;DOID:0060122,4.09e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0001042!5.85e-16!10;UBERON:0009145!5.85e-16!10;UBERON:0000974!1.48e-15!10;UBERON:0006562!1.72e-14!11;UBERON:0000341!9.23e-14!2;UBERON:0005631!2.43e-11!14;UBERON:0000158!2.43e-11!14;UBERON:0001723!1.66e-09!3;UBERON:0001033!1.66e-09!3;UBERON:0010056!1.66e-09!3;UBERON:0000305!4.36e-09!7;UBERON:0001557!2.72e-08!19;UBERON:0002372!4.57e-08!1;UBERON:0001961!4.57e-08!1;UBERON:0001744!4.57e-08!1;UBERON:0001735!4.57e-08!1;UBERON:0004871!5.28e-08!8;UBERON:0007029!8.28e-08!1;UBERON:0006834!1.69e-07!1;UBERON:0000014!2.04e-07!4;UBERON:0000166!2.55e-07!21;UBERON:0002370!2.80e-07!4;UBERON:0005058!2.80e-07!4;UBERON:0009113!2.80e-07!4;UBERON:0003295!2.80e-07!4;UBERON:0005562!2.80e-07!4;UBERON:0008814!5.78e-07!15;UBERON:0005795!6.10e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000305;3.93e-26;7!UBERON:0002372;1.69e-21;1!UBERON:0001961;1.69e-21;1!UBERON:0001744;1.69e-21;1!UBERON:0001042;1.69e-21;1!UBERON:0001735;1.69e-21;1!UBERON:0005631;1.58e-18;10!UBERON:0000158;1.58e-18;10!UBERON:0006562;1.92e-11;2!UBERON:0000341;2.88e-11;2!UBERON:0003127;3.89e-11;2!UBERON:0000478;4.25e-08;24!UBERON:0001043;4.68e-08;3!UBERON:0001723;6.13e-08;3!UBERON:0001033;6.13e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000305,3.45e-26,7;UBERON:0004871,5.13e-23,8;UBERON:0002372,1.88e-21,1;UBERON:0001961,1.88e-21,1;UBERON:0001744,1.88e-21,1;UBERON:0001735,1.88e-21,1;UBERON:0005631,1.82e-13,14;UBERON:0000158,1.82e-13,14;UBERON:0000341,2.73e-11,2;UBERON:0003127,4.52e-11,2;UBERON:0001042,5.80e-09,10;UBERON:0009145,5.80e-09,10;UBERON:0006562,3.14e-08,11;UBERON:0000478,4.10e-08,24;UBERON:0001043,4.52e-08,3;UBERON:0009143,4.52e-08,3;UBERON:0001723,6.34e-08,3;UBERON:0001033,6.34e-08,3;UBERON:0010056,6.34e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0.473447805734733,0,0.111410456885174,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,3.34242278632766,1.48482340416319,3.37876772309155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.697118721393016,1.30815439456455,0,0,0,0,0.957003479195758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.72235197281675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0063040627978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.544017803369474,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98527574661373,0.23806443146374,0.710478008196067,0.620747142958579,0,0,0,2.8303177226605,0.342233301085281,5.25346013513783,1.00411087549747,0,0,0,0,0,0,0.244482888365733,0.813792356631477,0,0,0 | |||
|short_description=p13@TPRG1 | |||
}} |
Revision as of 23:18, 12 September 2013
Short description: | p13@TPRG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_TPRG1_5end |
Coexpression cluster: | C629_esophagus_amniotic_tongue_throat_tonsil_uterus_salivary |
Association with transcript: | 12bp_to_ENST00000345063, NM_198485, uc003frw.1_5end |
EntrezGene: | TPRG1 |
HGNC: | 24759 |
UniProt: | Q6ZUI0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 2.55e-36 | 5 |
extraembryonic cell | 4.30e-10 | 19 |
Ontology term | p-value | n |
---|---|---|
amnion | 3.45e-26 | 7 |
somatic layer of lateral plate mesoderm | 5.13e-23 | 8 |
tonsil | 1.88e-21 | 1 |
mucosa-associated lymphoid tissue | 1.88e-21 | 1 |
lymphoid tissue | 1.88e-21 | 1 |
tonsillar ring | 1.88e-21 | 1 |
extraembryonic membrane | 1.82e-13 | 14 |
membranous layer | 1.82e-13 | 14 |
throat | 2.73e-11 | 2 |
open tracheal system trachea | 4.52e-11 | 2 |
chordate pharynx | 5.80e-09 | 10 |
pharyngeal region of foregut | 5.80e-09 | 10 |
pharynx | 3.14e-08 | 11 |
extraembryonic structure | 4.10e-08 | 24 |
esophagus | 4.52e-08 | 3 |
esophageal region | 4.52e-08 | 3 |
tongue | 6.34e-08 | 3 |
gustatory system | 6.34e-08 | 3 |
future tongue | 6.34e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 7.72e-21 | 1 |
keratoacanthoma | 7.72e-21 | 1 |
skin carcinoma | 4.09e-11 | 2 |
skin cancer | 4.09e-11 | 2 |
integumentary system cancer | 4.09e-11 | 2 |
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