FFCP PHASE1:Hg19::chr3:87040233..87040256,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=389136|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24327|TSSclassifier=S|UniProt=A8MV65|association_with_transcript=0bp_to_ENST00000398399,NM_016206,uc003dqn.2_5end|coexpression_cluster_id=C2757|description=CAGE_peak_3_at_VGLL3_5end|id=chr3:87040233..87040256,-|ontology_enrichment_celltype=CL:0000055!6.31e-19!180;CL:0000057!1.42e-18!75;CL:0002620!2.10e-09!23;CL:0000136!1.93e-07!15;CL:0000680!2.54e-07!57;CL:0000056!2.54e-07!57;CL:0000355!2.54e-07!57|ontology_enrichment_celltype_v019=CL:0002620;4.77e-10;23!CL:0000349;1.84e-09;19!CL:0000057;2.10e-08;73!CL:0000136;7.36e-08;13|ontology_enrichment_celltype_v019_2=CL:0000057,1.24e-20,76;CL:0002620,5.41e-10,23;CL:0000349,1.92e-09,19;CL:0000136,6.97e-08,15;CL:0000680,1.13e-07,58;CL:0000056,1.13e-07,58;CL:0000355,1.13e-07,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003102!1.02e-13!95;UBERON:0004923!1.11e-12!57;UBERON:0000475!7.36e-12!365;UBERON:0000481!5.29e-11!347;UBERON:0000468!6.70e-11!659;UBERON:0000914!8.32e-11!83;UBERON:0002329!8.32e-11!83;UBERON:0003077!8.32e-11!83;UBERON:0003059!8.32e-11!83;UBERON:0007282!8.32e-11!83;UBERON:0009618!8.32e-11!83;UBERON:0007285!8.32e-11!83;UBERON:0005256!2.01e-10!143;UBERON:0003104!2.45e-10!238;UBERON:0009142!2.45e-10!238;UBERON:0002100!2.57e-10!216;UBERON:0000478!3.59e-10!24;UBERON:0005631!3.61e-10!14;UBERON:0000158!3.61e-10!14;UBERON:0000486!5.33e-10!82;UBERON:0002199!5.31e-09!45;UBERON:0002416!5.31e-09!45;UBERON:0004290!5.93e-09!70;UBERON:0000064!1.06e-08!219;UBERON:0002097!3.82e-08!40;UBERON:0004119!5.80e-08!169;UBERON:0000925!5.80e-08!169;UBERON:0006595!5.80e-08!169;UBERON:0000467!6.30e-08!625;UBERON:0002385!8.66e-08!63;UBERON:0001015!8.66e-08!63;UBERON:0000383!8.66e-08!63;UBERON:0000480!9.68e-08!626;UBERON:0001134!1.41e-07!61;UBERON:0002036!1.41e-07!61;UBERON:0003082!1.41e-07!61|ontology_enrichment_uberon_v019=UBERON:0000478;1.83e-10;24!UBERON:0005631;2.85e-08;10!UBERON:0000158;2.85e-08;10!UBERON:0004923;1.57e-07;55!UBERON:0002384;4.62e-07;198|ontology_enrichment_uberon_v019_2=UBERON:0004923,3.30e-14,66;UBERON:0003102,3.34e-12,99;UBERON:0005631,8.17e-11,14;UBERON:0000158,8.17e-11,14;UBERON:0000486,1.04e-10,83;UBERON:0000478,1.77e-10,24;UBERON:0002329,1.67e-09,71;UBERON:0003059,1.67e-09,71;UBERON:0007282,1.67e-09,71;UBERON:0004290,1.67e-09,71;UBERON:0009618,1.67e-09,71;UBERON:0007524,1.72e-09,73;UBERON:0003077,4.24e-09,72;UBERON:0007285,4.24e-09,72;UBERON:0002199,7.62e-09,46;UBERON:0002416,7.62e-09,46;UBERON:0003104,7.82e-09,160;UBERON:0009142,7.82e-09,160;UBERON:0005256,1.17e-08,122;UBERON:0004119,1.40e-08,160;UBERON:0000925,1.40e-08,160;UBERON:0006595,1.40e-08,160;UBERON:0007503,2.42e-08,78;UBERON:0002385,3.53e-08,64;UBERON:0001015,3.53e-08,64;UBERON:0000383,3.53e-08,64;UBERON:0001134,5.94e-08,62;UBERON:0002036,5.94e-08,62;UBERON:0003082,5.94e-08,62;UBERON:0002097,6.29e-08,41;UBERON:0002100,9.15e-08,199|phase1_expression=21.8014055124668,22.6946555324442,40.4539139755437,26.0190575718139,20.113249249228,21.8084631025092,5.06599756336621,4.42203911398782,10.7086107561934,8.3549538410513,4.18680700783456,50.8968397063301,25.3216299099315,5.44571953024205,7.62213964174206,2.01697543935533,3.61616716814386,3.65155045193687,1.95173119516203,1.23121058076788,4.28401451612931,2.5076377718247,1.71741592278634,2.6006140763848,6.77930253811935,0,0,0,0,0,0.928896739896456,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,4.69490601792545,11.5076305659177,0,10.0267582127178,5.21447468258965,0,0,9.26441208207865,13.5254932452164,14.2292352822864,2.5540919722054,1.09288586487763,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0,0,1.67799774483962,1.10047216776027,1.46296476575767,0,0.71153252537342,1.00416183829401,0,0,0.24406205754817,0,0.81014194788176,1.16089646769304,1.12264686313085,0.900891843866578,0,0,0,0,0,2.18047026071267,33.2971207635863,6.20489507156441,11.3871895499368,6.59724227722272,7.80270440836386,12.8955848032731,5.33744978648525,1.48000529050296,15.8717628053881,4.58016285036939,3.43269996538263,9.23280308634082,14.98057403648,4.45210720484214,8.74048215124897,2.2818872861778,10.3119589580743,4.3450764498193,6.31304483035713,4.3539750077697,8.16616685019573,3.19369225010597,11.2625101481584,11.8800285728205,34.8646370282765,11.8320977051943,12.2165084108761,4.88174730466792,4.62938523526267,23.8275139316397,11.8523957637826,25.4384870513186,21.4840424236433,3.85669422744072,12.3778848625315,52.9622324270047,52.1352476852522,7.80236849819446,30.4004961253395,12.6243864622358,24.1951913231067,6.24472429292685,9.25651549031387,13.126556260694,57.2550369555102,21.8222176705396,6.39017266529906,11.3849870997234,1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=389136 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24327 | |||
|TSSclassifier=S | |||
|UniProt=A8MV65 | |||
|association_with_transcript=0bp_to_ENST00000398399,NM_016206,uc003dqn.2_5end | |||
|coexpression_cluster_id=C2757 | |||
|description=CAGE_peak_3_at_VGLL3_5end | |||
|id=chr3:87040233..87040256,- | |||
|ontology_enrichment_celltype=CL:0000055!6.31e-19!180;CL:0000057!1.42e-18!75;CL:0002620!2.10e-09!23;CL:0000136!1.93e-07!15;CL:0000680!2.54e-07!57;CL:0000056!2.54e-07!57;CL:0000355!2.54e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.77e-10;23!CL:0000349;1.84e-09;19!CL:0000057;2.10e-08;73!CL:0000136;7.36e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.24e-20,76;CL:0002620,5.41e-10,23;CL:0000349,1.92e-09,19;CL:0000136,6.97e-08,15;CL:0000680,1.13e-07,58;CL:0000056,1.13e-07,58;CL:0000355,1.13e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!1.02e-13!95;UBERON:0004923!1.11e-12!57;UBERON:0000475!7.36e-12!365;UBERON:0000481!5.29e-11!347;UBERON:0000468!6.70e-11!659;UBERON:0000914!8.32e-11!83;UBERON:0002329!8.32e-11!83;UBERON:0003077!8.32e-11!83;UBERON:0003059!8.32e-11!83;UBERON:0007282!8.32e-11!83;UBERON:0009618!8.32e-11!83;UBERON:0007285!8.32e-11!83;UBERON:0005256!2.01e-10!143;UBERON:0003104!2.45e-10!238;UBERON:0009142!2.45e-10!238;UBERON:0002100!2.57e-10!216;UBERON:0000478!3.59e-10!24;UBERON:0005631!3.61e-10!14;UBERON:0000158!3.61e-10!14;UBERON:0000486!5.33e-10!82;UBERON:0002199!5.31e-09!45;UBERON:0002416!5.31e-09!45;UBERON:0004290!5.93e-09!70;UBERON:0000064!1.06e-08!219;UBERON:0002097!3.82e-08!40;UBERON:0004119!5.80e-08!169;UBERON:0000925!5.80e-08!169;UBERON:0006595!5.80e-08!169;UBERON:0000467!6.30e-08!625;UBERON:0002385!8.66e-08!63;UBERON:0001015!8.66e-08!63;UBERON:0000383!8.66e-08!63;UBERON:0000480!9.68e-08!626;UBERON:0001134!1.41e-07!61;UBERON:0002036!1.41e-07!61;UBERON:0003082!1.41e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.83e-10;24!UBERON:0005631;2.85e-08;10!UBERON:0000158;2.85e-08;10!UBERON:0004923;1.57e-07;55!UBERON:0002384;4.62e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004923,3.30e-14,66;UBERON:0003102,3.34e-12,99;UBERON:0005631,8.17e-11,14;UBERON:0000158,8.17e-11,14;UBERON:0000486,1.04e-10,83;UBERON:0000478,1.77e-10,24;UBERON:0002329,1.67e-09,71;UBERON:0003059,1.67e-09,71;UBERON:0007282,1.67e-09,71;UBERON:0004290,1.67e-09,71;UBERON:0009618,1.67e-09,71;UBERON:0007524,1.72e-09,73;UBERON:0003077,4.24e-09,72;UBERON:0007285,4.24e-09,72;UBERON:0002199,7.62e-09,46;UBERON:0002416,7.62e-09,46;UBERON:0003104,7.82e-09,160;UBERON:0009142,7.82e-09,160;UBERON:0005256,1.17e-08,122;UBERON:0004119,1.40e-08,160;UBERON:0000925,1.40e-08,160;UBERON:0006595,1.40e-08,160;UBERON:0007503,2.42e-08,78;UBERON:0002385,3.53e-08,64;UBERON:0001015,3.53e-08,64;UBERON:0000383,3.53e-08,64;UBERON:0001134,5.94e-08,62;UBERON:0002036,5.94e-08,62;UBERON:0003082,5.94e-08,62;UBERON:0002097,6.29e-08,41;UBERON:0002100,9.15e-08,199 | |||
|phase1_expression=21.8014055124668,22.6946555324442,40.4539139755437,26.0190575718139,20.113249249228,21.8084631025092,5.06599756336621,4.42203911398782,10.7086107561934,8.3549538410513,4.18680700783456,50.8968397063301,25.3216299099315,5.44571953024205,7.62213964174206,2.01697543935533,3.61616716814386,3.65155045193687,1.95173119516203,1.23121058076788,4.28401451612931,2.5076377718247,1.71741592278634,2.6006140763848,6.77930253811935,0,0,0,0,0,0.928896739896456,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,4.69490601792545,11.5076305659177,0,10.0267582127178,5.21447468258965,0,0,9.26441208207865,13.5254932452164,14.2292352822864,2.5540919722054,1.09288586487763,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0,0,1.67799774483962,1.10047216776027,1.46296476575767,0,0.71153252537342,1.00416183829401,0,0,0.24406205754817,0,0.81014194788176,1.16089646769304,1.12264686313085,0.900891843866578,0,0,0,0,0,2.18047026071267,33.2971207635863,6.20489507156441,11.3871895499368,6.59724227722272,7.80270440836386,12.8955848032731,5.33744978648525,1.48000529050296,15.8717628053881,4.58016285036939,3.43269996538263,9.23280308634082,14.98057403648,4.45210720484214,8.74048215124897,2.2818872861778,10.3119589580743,4.3450764498193,6.31304483035713,4.3539750077697,8.16616685019573,3.19369225010597,11.2625101481584,11.8800285728205,34.8646370282765,11.8320977051943,12.2165084108761,4.88174730466792,4.62938523526267,23.8275139316397,11.8523957637826,25.4384870513186,21.4840424236433,3.85669422744072,12.3778848625315,52.9622324270047,52.1352476852522,7.80236849819446,30.4004961253395,12.6243864622358,24.1951913231067,6.24472429292685,9.25651549031387,13.126556260694,57.2550369555102,21.8222176705396,6.39017266529906,11.3849870997234,12.2083626463551,3.09217365061275,3.81844568827169,2.00763216772303,0.243947412259191,0.927708378250397,0.69716365721711,2.07322110030741,2.52320850875628,1.45990943630332,34.4188971125595,33.44852878603,0,53.4023117236776,33.2064561568009,7.8082488026297,7.24914167335837,7.95336398615491,6.17646247301406,8.27941887551143,7.59265981155509,6.20224017536756,8.82996593064057,8.84918460976698,0,8.41450642820675,3.2925920906512,8.82052268313252,0,0,0,0,11.929878538682,5.49016992955282,3.29250856225877,0,0.201057944823262,1.85176890317059,2.6064664424826,2.07986957055916,17.3197610430328,1.27523445472584,19.9594780200897,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,3.86358894857377,0.283550194484773,0.268675568108545,1.74380363108377,1.15014803749563,0,0,0.621984346622316,0,0.12624243342638,0,0,0,3.4214489204541,0.308482478109971,0,0,5.83081638595876,8.7192013766656,9.0939474417978,10.8588241236533,17.8828222925941,1.690605505112,16.488163228262,15.6011155367049,4.62973273671856,2.83698264046557,3.72991050622539,17.5862932199522,9.22456729165453,0.823240336780769,3.25736184293735,7.81862287233601,0,5.42590878707255,5.22920075160176,8.89759621520308,0,0,0,17.2529895953939,16.0806710167759,1.42636905040718,12.8855362934145,9.8628634824184,13.0714503165124,0,0,0,0,3.30323011489202,1.30139853857622,0.773288812777695,0.167516265334349,0.637938751653163,0,0,0,12.0237661884757,10.0034104211935,10.8506009479894,24.1246199375736,20.1624757340793,27.2825178008707,33.0338790279451,13.2416283880196,15.9185252839189,9.31257641632544,13.2845119707087,5.16233671916769,25.0224809668079,2.93701736194111,5.14715135716284,0,0,0,23.340823001362,26.6296703216795,22.9816622930557,27.0437510522467,10.2819522103002,13.4716845327875,34.5975702990393,32.2375566912023,18.3373470103713,11.8734453155993,4.62629081407967,4.79416658345443,2.62806899244189,0,4.41599438147845,6.16383192917273,5.21316822788541,1.38121483403844,1.95184561879831,3.09554985611419,7.0807184078089,2.70719767744447,8.31765640727679,0.784349769176855,4.38417673959782,5.59423633132241,0,0.170093705276516,1.72732732881711,0,2.16757150035082,1.00337954770971,2.80363900349542,1.66215201785745,0.671624264166535,0,0,0.512900250232778,2.62411716559765,3.57916234130733,61.0002788954516,0.0915694648183434,0.082509499920588,5.16838984196555,1.30012049207304,19.2820715812991,3.0934629853479,7.54838223861757,7.06116903740196,6.89182862422653,9.99008277274945,10.151168573996,7.49994321261688,11.2180364914889,1.15699440752685,3.65161127993702,1.53135254993501,2.023155617111,9.761756535243,7.24068397710472,2.0911118104818,0,1.59691809095107,2.60979897622522,1.48259375283136,1.14499909393593,7.81532575655301,17.0844889348112,37.1728878151458,5.62975140884935,8.55877976067841,6.36406495851874,2.35484592059769,15.4690313521651,7.96157386234559,9.18936738296354,0.606547444719948,3.17020642346017,3.37006764991185,10.727942259971,1.46228093778771,1.05650146756755,5.05049672209547,7.35308246159306,2.26016233240486,1.65409603063837,1.32687795048244,3.06915619677634,8.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| |||
|short_description=p3@VGLL3 | |||
}} |
Revision as of 01:30, 13 September 2013
Short description: | p3@VGLL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_VGLL3_5end |
Coexpression cluster: | C2757_bronchogenic_placenta_small_oral_bone_Hair_chorionic |
Association with transcript: | 0bp_to_ENST00000398399, NM_016206, uc003dqn.2_5end |
EntrezGene: | VGLL3 |
HGNC: | 24327 |
UniProt: | A8MV65 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.24e-20 | 76 |
skin fibroblast | 5.41e-10 | 23 |
extraembryonic cell | 1.92e-09 | 19 |
fat cell | 6.97e-08 | 15 |
muscle precursor cell | 1.13e-07 | 58 |
myoblast | 1.13e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.13e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
organ component layer | 3.30e-14 | 66 |
surface structure | 3.34e-12 | 99 |
extraembryonic membrane | 8.17e-11 | 14 |
membranous layer | 8.17e-11 | 14 |
multilaminar epithelium | 1.04e-10 | 83 |
extraembryonic structure | 1.77e-10 | 24 |
somite | 1.67e-09 | 71 |
presomitic mesoderm | 1.67e-09 | 71 |
presumptive segmental plate | 1.67e-09 | 71 |
dermomyotome | 1.67e-09 | 71 |
trunk paraxial mesoderm | 1.67e-09 | 71 |
dense mesenchyme tissue | 1.72e-09 | 73 |
paraxial mesoderm | 4.24e-09 | 72 |
presumptive paraxial mesoderm | 4.24e-09 | 72 |
integument | 7.62e-09 | 46 |
integumental system | 7.62e-09 | 46 |
mesenchyme | 7.82e-09 | 160 |
entire embryonic mesenchyme | 7.82e-09 | 160 |
trunk mesenchyme | 1.17e-08 | 122 |
endoderm-derived structure | 1.40e-08 | 160 |
endoderm | 1.40e-08 | 160 |
presumptive endoderm | 1.40e-08 | 160 |
epithelial vesicle | 2.42e-08 | 78 |
muscle tissue | 3.53e-08 | 64 |
musculature | 3.53e-08 | 64 |
musculature of body | 3.53e-08 | 64 |
skeletal muscle tissue | 5.94e-08 | 62 |
striated muscle tissue | 5.94e-08 | 62 |
myotome | 5.94e-08 | 62 |
skin of body | 6.29e-08 | 41 |
trunk | 9.15e-08 | 199 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.