FFCP PHASE1:Hg19::chr19:36611472..36611485,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1453|description=CAGE_peak_at_chr19:36611472..36611485,+|id=chr19:36611472..36611485,+|ontology_enrichment_celltype=CL:0000181!5.90e-08!12;CL:0000417!5.90e-08!12;CL:0000668!5.90e-08!12;CL:0000414!5.90e-08!12;CL:0000412!5.90e-08!12;CL:0000182!5.90e-08!12|ontology_enrichment_celltype_v019=CL:0000182;2.45e-30;12!CL:0002535;3.11e-21;2|ontology_enrichment_celltype_v019_2=CL:0000182,2.45e-30,12;CL:0002535,3.11e-21,2;CL:0000223,6.14e-07,58|ontology_enrichment_development_v019=UBERON:0004161;5.34e-33;11!UBERON:0009497;4.39e-28;13!UBERON:0001041;1.07e-12;30!UBERON:0003104;4.69e-12;31|ontology_enrichment_disease=DOID:0050619!9.05e-11!1;DOID:1357!9.05e-11!1|ontology_enrichment_disease_v019=DOID:7;2.18e-10;39!DOID:4362;2.53e-09;5|ontology_enrichment_disease_v019_2=DOID:7,5.89e-10,39;DOID:4362,2.53e-09,5|ontology_enrichment_uberon=UBERON:0000200!4.53e-25!6;UBERON:0002780!6.22e-21!41;UBERON:0001890!6.22e-21!41;UBERON:0006240!6.22e-21!41;UBERON:0000007!1.86e-20!2;UBERON:0003080!2.05e-20!42;UBERON:0001871!3.42e-19!7;UBERON:0001869!3.77e-17!32;UBERON:0003056!1.18e-16!61;UBERON:0001893!4.06e-16!34;UBERON:0001950!9.75e-16!20;UBERON:0001049!9.07e-15!57;UBERON:0005068!9.07e-15!57;UBERON:0006241!9.07e-15!57;UBERON:0007135!9.07e-15!57;UBERON:0002619!2.46e-14!22;UBERON:0002616!3.15e-14!59;UBERON:0003075!1.10e-13!86;UBERON:0007284!1.10e-13!86;UBERON:0002771!1.32e-13!3;UBERON:0002346!5.32e-13!90;UBERON:0002791!8.19e-13!33;UBERON:0000956!1.23e-12!25;UBERON:0000203!1.23e-12!25;UBERON:0002020!1.99e-12!34;UBERON:0003528!1.99e-12!34;UBERON:0001017!6.86e-12!82;UBERON:0000955!8.43e-12!69;UBERON:0006238!8.43e-12!69;UBERON:0005743!2.84e-11!86;UBERON:0001764!9.05e-11!1;UBERON:0001825!9.05e-11!1;UBERON:0003296!1.05e-10!4;UBERON:0010133!1.05e-10!4;UBERON:0007190!1.46e-10!1;UBERON:0002581!1.61e-10!1;UBERON:0001882!1.77e-10!1;UBERON:0005403!1.77e-10!1;UBERON:0000073!4.52e-10!94;UBERON:0001016!4.52e-10!94;UBERON:0000033!6.13e-09!123;UBERON:0000349!1.72e-08!5;UBERON:0000153!1.92e-08!129;UBERON:0007811!1.92e-08!129;UBERON:0007023!3.13e-08!115;UBERON:0004121!3.58e-07!169;UBERON:0000483!3.80e-07!309;UBERON:0000119!4.76e-07!312;UBERON:0000924!5.81e-07!173;UBERON:0006601!5.81e-07!173;UBERON:0002368!7.13e-07!35|ontology_enrichment_uberon_v019=UBERON:0006955;3.11e-21;2!UBERON:0004801;3.11e-21;2!UBERON:0000007;6.96e-21;2!UBERON:0002107;1.58e-19;19!UBERON:0006925;1.58e-19;19!UBERON:0002368;1.92e-17;33!UBERON:0002423;4.61e-15;25!UBERON:0000949;3.55e-12;43!UBERON:0002365;2.05e-11;31!UBERON:0002330;2.05e-11;31!UBERON:0003296;3.79e-11;4!UBERON:0010133;3.79e-11;4!UBERON:0000002;5.54e-08;6!UBERON:0001560;5.54e-08;6!UBERON:0002530;3.61e-07;57!UBERON:0001894;6.39e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0006955,3.11e-21,2;UBERON:0004801,3.11e-21,2;UBERON:0000007,6.96e-21,2;UBERON:0002107,1.58e-19,19;UBERON:0006925,1.58e-19,19;UBERON:0008836,1.58e-19,19;UBERON:0002368,1.04e-18,35;UBERON:0008835,5.41e-17,22;UBERON:0003894,5.41e-17,22;UBERON:0009854,2.71e-16,23;UBERON:0007499,4.61e-15,25;UBERON:0009497,4.61e-15,25;UBERON:0000015,4.61e-15,25;UBERON:0002423,4.61e-15,25;UBERON:0006235,4.61e-15,25;UBERON:0004161,4.61e-15,25;UBERON:0000949,1.01e-14,45;UBERON:0009856,1.62e-14,26;UBERON:0002365,2.58e-12,31;UBERON:0002330,2.58e-12,31;UBERON:0002530,2.13e-11,59;UBERON:0003296,3.79e-11,4;UBERON:0010133,3.79e-11,4;UBERON:0000002,5.54e-08,6;UBERON:0001560,5.54e-08,6;UBERON:0003929,2.12e-07,54;UBERON:0005172,2.12e-07,54;UBERON:0005173,2.12e-07,54;UBERON:0001894,6.39e-07,7;UBERON:0006222,6.39e-07,7;UBERON:0002417,9.92e-07,60;UBERON:0000916,9.92e-07,60|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0,0,7.306049687774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1453 | |||
|description=CAGE_peak_at_chr19:36611472..36611485,+ | |||
|id=chr19:36611472..36611485,+ | |||
|ontology_enrichment_celltype=CL:0000181!5.90e-08!12;CL:0000417!5.90e-08!12;CL:0000668!5.90e-08!12;CL:0000414!5.90e-08!12;CL:0000412!5.90e-08!12;CL:0000182!5.90e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.45e-30;12!CL:0002535;3.11e-21;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.45e-30,12;CL:0002535,3.11e-21,2;CL:0000223,6.14e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.34e-33;11!UBERON:0009497;4.39e-28;13!UBERON:0001041;1.07e-12;30!UBERON:0003104;4.69e-12;31 | |||
|ontology_enrichment_disease=DOID:0050619!9.05e-11!1;DOID:1357!9.05e-11!1 | |||
|ontology_enrichment_disease_v019=DOID:7;2.18e-10;39!DOID:4362;2.53e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:7,5.89e-10,39;DOID:4362,2.53e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0000200!4.53e-25!6;UBERON:0002780!6.22e-21!41;UBERON:0001890!6.22e-21!41;UBERON:0006240!6.22e-21!41;UBERON:0000007!1.86e-20!2;UBERON:0003080!2.05e-20!42;UBERON:0001871!3.42e-19!7;UBERON:0001869!3.77e-17!32;UBERON:0003056!1.18e-16!61;UBERON:0001893!4.06e-16!34;UBERON:0001950!9.75e-16!20;UBERON:0001049!9.07e-15!57;UBERON:0005068!9.07e-15!57;UBERON:0006241!9.07e-15!57;UBERON:0007135!9.07e-15!57;UBERON:0002619!2.46e-14!22;UBERON:0002616!3.15e-14!59;UBERON:0003075!1.10e-13!86;UBERON:0007284!1.10e-13!86;UBERON:0002771!1.32e-13!3;UBERON:0002346!5.32e-13!90;UBERON:0002791!8.19e-13!33;UBERON:0000956!1.23e-12!25;UBERON:0000203!1.23e-12!25;UBERON:0002020!1.99e-12!34;UBERON:0003528!1.99e-12!34;UBERON:0001017!6.86e-12!82;UBERON:0000955!8.43e-12!69;UBERON:0006238!8.43e-12!69;UBERON:0005743!2.84e-11!86;UBERON:0001764!9.05e-11!1;UBERON:0001825!9.05e-11!1;UBERON:0003296!1.05e-10!4;UBERON:0010133!1.05e-10!4;UBERON:0007190!1.46e-10!1;UBERON:0002581!1.61e-10!1;UBERON:0001882!1.77e-10!1;UBERON:0005403!1.77e-10!1;UBERON:0000073!4.52e-10!94;UBERON:0001016!4.52e-10!94;UBERON:0000033!6.13e-09!123;UBERON:0000349!1.72e-08!5;UBERON:0000153!1.92e-08!129;UBERON:0007811!1.92e-08!129;UBERON:0007023!3.13e-08!115;UBERON:0004121!3.58e-07!169;UBERON:0000483!3.80e-07!309;UBERON:0000119!4.76e-07!312;UBERON:0000924!5.81e-07!173;UBERON:0006601!5.81e-07!173;UBERON:0002368!7.13e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0006955;3.11e-21;2!UBERON:0004801;3.11e-21;2!UBERON:0000007;6.96e-21;2!UBERON:0002107;1.58e-19;19!UBERON:0006925;1.58e-19;19!UBERON:0002368;1.92e-17;33!UBERON:0002423;4.61e-15;25!UBERON:0000949;3.55e-12;43!UBERON:0002365;2.05e-11;31!UBERON:0002330;2.05e-11;31!UBERON:0003296;3.79e-11;4!UBERON:0010133;3.79e-11;4!UBERON:0000002;5.54e-08;6!UBERON:0001560;5.54e-08;6!UBERON:0002530;3.61e-07;57!UBERON:0001894;6.39e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,3.11e-21,2;UBERON:0004801,3.11e-21,2;UBERON:0000007,6.96e-21,2;UBERON:0002107,1.58e-19,19;UBERON:0006925,1.58e-19,19;UBERON:0008836,1.58e-19,19;UBERON:0002368,1.04e-18,35;UBERON:0008835,5.41e-17,22;UBERON:0003894,5.41e-17,22;UBERON:0009854,2.71e-16,23;UBERON:0007499,4.61e-15,25;UBERON:0009497,4.61e-15,25;UBERON:0000015,4.61e-15,25;UBERON:0002423,4.61e-15,25;UBERON:0006235,4.61e-15,25;UBERON:0004161,4.61e-15,25;UBERON:0000949,1.01e-14,45;UBERON:0009856,1.62e-14,26;UBERON:0002365,2.58e-12,31;UBERON:0002330,2.58e-12,31;UBERON:0002530,2.13e-11,59;UBERON:0003296,3.79e-11,4;UBERON:0010133,3.79e-11,4;UBERON:0000002,5.54e-08,6;UBERON:0001560,5.54e-08,6;UBERON:0003929,2.12e-07,54;UBERON:0005172,2.12e-07,54;UBERON:0005173,2.12e-07,54;UBERON:0001894,6.39e-07,7;UBERON:0006222,6.39e-07,7;UBERON:0002417,9.92e-07,60;UBERON:0000916,9.92e-07,60 | |||
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|short_description=p@chr19:36611472..36611485,+ | |||
}} |
Revision as of 20:19, 11 September 2013
Short description: | p@chr19:36611472..36611485, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:36611472..36611485, + |
Coexpression cluster: | C1453_argyrophil_hepatocellular_Intestinal_small_liver_hepatoblastoma_gastrointestinal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.45e-30 | 12 |
epithelial cell of cervix | 3.11e-21 | 2 |
endodermal cell | 6.14e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 3.11e-21 | 2 |
cervix epithelium | 3.11e-21 | 2 |
pituitary gland | 6.96e-21 | 2 |
liver | 1.58e-19 | 19 |
digestive gland | 1.58e-19 | 19 |
liver bud | 1.58e-19 | 19 |
endocrine gland | 1.04e-18 | 35 |
hepatic diverticulum | 5.41e-17 | 22 |
liver primordium | 5.41e-17 | 22 |
digestive tract diverticulum | 2.71e-16 | 23 |
epithelial sac | 4.61e-15 | 25 |
epithelium of foregut-midgut junction | 4.61e-15 | 25 |
anatomical boundary | 4.61e-15 | 25 |
hepatobiliary system | 4.61e-15 | 25 |
foregut-midgut junction | 4.61e-15 | 25 |
septum transversum | 4.61e-15 | 25 |
endocrine system | 1.01e-14 | 45 |
sac | 1.62e-14 | 26 |
exocrine gland | 2.58e-12 | 31 |
exocrine system | 2.58e-12 | 31 |
gland | 2.13e-11 | 59 |
gland of diencephalon | 3.79e-11 | 4 |
neuroendocrine gland | 3.79e-11 | 4 |
uterine cervix | 5.54e-08 | 6 |
neck of organ | 5.54e-08 | 6 |
gut epithelium | 2.12e-07 | 54 |
abdomen element | 2.12e-07 | 54 |
abdominal segment element | 2.12e-07 | 54 |
diencephalon | 6.39e-07 | 7 |
future diencephalon | 6.39e-07 | 7 |
abdominal segment of trunk | 9.92e-07 | 60 |
abdomen | 9.92e-07 | 60 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 5.89e-10 | 39 |
cervical cancer | 2.53e-09 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.