FFCP PHASE1:Hg19::chr17:27044580..27044591,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=83871|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16519|TSSclassifier=S|UniProt=|association_with_transcript=133bp_to_ENST00000483554_5end|description=CAGE_peak_8_at_RAB34_5end|id=chr17:27044580..27044591,-|ontology_enrichment_celltype=CL:0000222!6.11e-14!119;CL:0002321!1.86e-13!248;CL:0000220!3.86e-13!246;CL:0000012!4.90e-12!682;CL:0000055!5.28e-12!180;CL:0000548!3.34e-11!679;CL:0000004!3.34e-11!679;CL:0000255!3.34e-11!679;CL:0000183!7.20e-11!59;CL:0000066!1.11e-10!254;CL:0000393!3.82e-09!60;CL:0000211!3.82e-09!60;CL:0000680!1.06e-08!57;CL:0000056!1.06e-08!57;CL:0000355!1.06e-08!57;CL:0000187!1.61e-08!54;CL:0000192!1.22e-07!42;CL:0000514!1.22e-07!42|ontology_enrichment_celltype_v019=CL:0000669;1.67e-08;4!CL:1000449;4.38e-08;15!CL:1000746;1.54e-07;7!CL:1000612;1.54e-07;7!CL:0002577;5.50e-07;3!CL:1000497;6.02e-07;17!CL:0002518;6.02e-07;17|ontology_enrichment_celltype_v019_2=CL:0000222,3.88e-11,121;CL:0000669,6.60e-09,4;CL:1000449,3.14e-08,15;CL:1000746,7.38e-08,7;CL:1000612,7.38e-08,7;CL:0002321,1.33e-07,250;CL:0002577,1.49e-07,3;CL:0000187,3.39e-07,55;CL:0000192,4.04e-07,43;CL:0000514,4.04e-07,43;CL:1000497,4.52e-07,17;CL:0002518,4.52e-07,17;CL:0000393,5.42e-07,61;CL:0000211,5.42e-07,61|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003104!2.28e-08!238;UBERON:0009142!2.28e-08!238;UBERON:0000481!2.33e-08!347;UBERON:0000072!9.25e-08!46;UBERON:0002049!1.97e-07!79;UBERON:0007798!1.97e-07!79;UBERON:0003103!2.06e-07!69;UBERON:0008947!2.31e-07!38;UBERON:0003258!2.31e-07!38;UBERON:0001134!2.85e-07!61;UBERON:0002036!2.85e-07!61;UBERON:0003082!2.85e-07!61;UBERON:0004290!4.27e-07!70;UBERON:0001737!9.12e-07!9;UBERON:0002385!9.25e-07!63;UBERON:0001015!9.25e-07!63;UBERON:0000383!9.25e-07!63;UBERON:0000914!9.88e-07!83;UBERON:0002329!9.88e-07!83;UBERON:0003077!9.88e-07!83;UBERON:0003059!9.88e-07!83;UBERON:0007282!9.88e-07!83;UBERON:0009618!9.88e-07!83;UBERON:0007285!9.88e-07!83|ontology_enrichment_uberon_v019=UBERON:0001737;4.23e-13;9!UBERON:0001557;4.23e-13;9!UBERON:0002113;2.34e-08;24!UBERON:0011143;2.34e-08;24!UBERON:0000072;3.60e-08;37!UBERON:0006555;4.38e-08;15!UBERON:0004819;4.38e-08;15!UBERON:0001285;4.38e-08;15!UBERON:0007684;4.38e-08;15!UBERON:0001851;9.11e-08;15!UBERON:0000074;1.54e-07;7!UBERON:0001229;1.54e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.26e-13,9;UBERON:0001557,9.76e-09,19;UBERON:0008947,1.73e-08,38;UBERON:0003258,1.73e-08,38;UBERON:0004211,3.14e-08,15;UBERON:0009773,3.14e-08,15;UBERON:0001231,3.14e-08,15;UBERON:0001285,3.14e-08,15;UBERON:0007684,3.14e-08,15;UBERON:0004208,3.14e-08,15;UBERON:0000072,3.39e-08,47;UBERON:0010532,7.38e-08,7;UBERON:0000074,7.38e-08,7;UBERON:0001229,7.38e-08,7;UBERON:0001230,7.38e-08,7;UBERON:0003220,7.38e-08,7;UBERON:0005749,7.38e-08,7;UBERON:0004199,7.38e-08,7;UBERON:0004209,7.38e-08,7;UBERON:0004198,7.38e-08,7;UBERON:0001851,8.65e-08,15;UBERON:0007503,1.06e-07,78;UBERON:0006555,1.30e-07,16;UBERON:0004819,1.30e-07,16;UBERON:0002113,1.77e-07,26;UBERON:0003918,1.77e-07,26;UBERON:0011143,1.77e-07,26;UBERON:0005095,1.77e-07,26;UBERON:0007687,1.77e-07,26;UBERON:0005103,8.31e-07,8;UBERON:0000083,8.31e-07,8;UBERON:0009201,8.31e-07,8;UBERON:0006553,8.31e-07,8;UBERON:0003074,8.31e-07,8;UBERON:0003060,8.31e-07,8|phase1_expression=0.726713517082227,0.428201047781966,0.281908808191942,1.0007329835313,0.446961094427288,0.872338524100369,0,0,0.261185628199839,1.22866968250754,3.48900583986214,0.218441372130172,0,0.74259811776028,0.331397375727916,0,0.602694528023977,0,0.487932798790507,1.23121058076788,2.65200898617529,0.626909442956176,0.572471974262113,1.09499540058307,0.376627918784408,0,0,0,0,0.767658796194425,0.154816123316076,0.919421224478927,0.90361775633475,0.369754010166788,0,0,0,0.553995408531877,0.200544447470142,0,0,0.32389366601898,0.257575567634187,0,0.377875943688809,0,0,0,0,0.575384784644301,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0.56738522469114,0,0,0,0,0.605399502633369,0,0,0,0,0,0.112328631146495,0.150176892841506,0,0,0,0,0,0.546138611262131,0,0,0.400395987036012,0.574752439954483,0,0,0.569212969109448,0.587237189370939,0.382273228125229,1.32171328579026,0.560508562981536,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,1.0843174571537,0,0.434539556882471,0,0,1.51255707462509,1.10864698731282,0.87834785693126,0.392937226493138,0.364295288292542,0.370784442784429,0,0,0,0,0,0.371457501329565,0,0.860234595106124,0,0,0.419499436209906,1.6507082516404,0.626984899610432,0.258416759169329,0.35576626268671,0.33472061276467,0,1.52054421143703,0.488124115096339,0,2.43042584364528,0.625098097988558,0.673588117878509,0.900891843866578,0,0,0.549605231791222,0,0,0,0,0.379891534993739,0.662045904066094,0,0.354668382198357,0.560677600142307,0,1.48000529050296,0.31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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=83871 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16519 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=133bp_to_ENST00000483554_5end | |||
|description=CAGE_peak_8_at_RAB34_5end | |||
|id=chr17:27044580..27044591,- | |||
|ontology_enrichment_celltype=CL:0000222!6.11e-14!119;CL:0002321!1.86e-13!248;CL:0000220!3.86e-13!246;CL:0000012!4.90e-12!682;CL:0000055!5.28e-12!180;CL:0000548!3.34e-11!679;CL:0000004!3.34e-11!679;CL:0000255!3.34e-11!679;CL:0000183!7.20e-11!59;CL:0000066!1.11e-10!254;CL:0000393!3.82e-09!60;CL:0000211!3.82e-09!60;CL:0000680!1.06e-08!57;CL:0000056!1.06e-08!57;CL:0000355!1.06e-08!57;CL:0000187!1.61e-08!54;CL:0000192!1.22e-07!42;CL:0000514!1.22e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000669;1.67e-08;4!CL:1000449;4.38e-08;15!CL:1000746;1.54e-07;7!CL:1000612;1.54e-07;7!CL:0002577;5.50e-07;3!CL:1000497;6.02e-07;17!CL:0002518;6.02e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.88e-11,121;CL:0000669,6.60e-09,4;CL:1000449,3.14e-08,15;CL:1000746,7.38e-08,7;CL:1000612,7.38e-08,7;CL:0002321,1.33e-07,250;CL:0002577,1.49e-07,3;CL:0000187,3.39e-07,55;CL:0000192,4.04e-07,43;CL:0000514,4.04e-07,43;CL:1000497,4.52e-07,17;CL:0002518,4.52e-07,17;CL:0000393,5.42e-07,61;CL:0000211,5.42e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!2.28e-08!238;UBERON:0009142!2.28e-08!238;UBERON:0000481!2.33e-08!347;UBERON:0000072!9.25e-08!46;UBERON:0002049!1.97e-07!79;UBERON:0007798!1.97e-07!79;UBERON:0003103!2.06e-07!69;UBERON:0008947!2.31e-07!38;UBERON:0003258!2.31e-07!38;UBERON:0001134!2.85e-07!61;UBERON:0002036!2.85e-07!61;UBERON:0003082!2.85e-07!61;UBERON:0004290!4.27e-07!70;UBERON:0001737!9.12e-07!9;UBERON:0002385!9.25e-07!63;UBERON:0001015!9.25e-07!63;UBERON:0000383!9.25e-07!63;UBERON:0000914!9.88e-07!83;UBERON:0002329!9.88e-07!83;UBERON:0003077!9.88e-07!83;UBERON:0003059!9.88e-07!83;UBERON:0007282!9.88e-07!83;UBERON:0009618!9.88e-07!83;UBERON:0007285!9.88e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.23e-13;9!UBERON:0001557;4.23e-13;9!UBERON:0002113;2.34e-08;24!UBERON:0011143;2.34e-08;24!UBERON:0000072;3.60e-08;37!UBERON:0006555;4.38e-08;15!UBERON:0004819;4.38e-08;15!UBERON:0001285;4.38e-08;15!UBERON:0007684;4.38e-08;15!UBERON:0001851;9.11e-08;15!UBERON:0000074;1.54e-07;7!UBERON:0001229;1.54e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.26e-13,9;UBERON:0001557,9.76e-09,19;UBERON:0008947,1.73e-08,38;UBERON:0003258,1.73e-08,38;UBERON:0004211,3.14e-08,15;UBERON:0009773,3.14e-08,15;UBERON:0001231,3.14e-08,15;UBERON:0001285,3.14e-08,15;UBERON:0007684,3.14e-08,15;UBERON:0004208,3.14e-08,15;UBERON:0000072,3.39e-08,47;UBERON:0010532,7.38e-08,7;UBERON:0000074,7.38e-08,7;UBERON:0001229,7.38e-08,7;UBERON:0001230,7.38e-08,7;UBERON:0003220,7.38e-08,7;UBERON:0005749,7.38e-08,7;UBERON:0004199,7.38e-08,7;UBERON:0004209,7.38e-08,7;UBERON:0004198,7.38e-08,7;UBERON:0001851,8.65e-08,15;UBERON:0007503,1.06e-07,78;UBERON:0006555,1.30e-07,16;UBERON:0004819,1.30e-07,16;UBERON:0002113,1.77e-07,26;UBERON:0003918,1.77e-07,26;UBERON:0011143,1.77e-07,26;UBERON:0005095,1.77e-07,26;UBERON:0007687,1.77e-07,26;UBERON:0005103,8.31e-07,8;UBERON:0000083,8.31e-07,8;UBERON:0009201,8.31e-07,8;UBERON:0006553,8.31e-07,8;UBERON:0003074,8.31e-07,8;UBERON:0003060,8.31e-07,8 | |||
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| |||
|short_description=p8@RAB34 | |||
}} |
Revision as of 12:46, 11 September 2013
Short description: | p8@RAB34 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_RAB34_5end |
Coexpression cluster: | NA |
Association with transcript: | 133bp_to_ENST00000483554_5end |
EntrezGene: | RAB34 |
HGNC: | 16519 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.88e-11 | 121 |
pericyte cell | 6.60e-09 | 4 |
epithelial cell of nephron | 3.14e-08 | 15 |
glomerular cell | 7.38e-08 | 7 |
kidney corpuscule cell | 7.38e-08 | 7 |
embryonic cell | 1.33e-07 | 250 |
placental epithelial cell | 1.49e-07 | 3 |
muscle cell | 3.39e-07 | 55 |
smooth muscle cell | 4.04e-07 | 43 |
smooth muscle myoblast | 4.04e-07 | 43 |
kidney cell | 4.52e-07 | 17 |
kidney epithelial cell | 4.52e-07 | 17 |
electrically responsive cell | 5.42e-07 | 61 |
electrically active cell | 5.42e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.26e-13 | 9 |
upper respiratory tract | 9.76e-09 | 19 |
respiratory primordium | 1.73e-08 | 38 |
endoderm of foregut | 1.73e-08 | 38 |
nephron epithelium | 3.14e-08 | 15 |
renal tubule | 3.14e-08 | 15 |
nephron tubule | 3.14e-08 | 15 |
nephron | 3.14e-08 | 15 |
uriniferous tubule | 3.14e-08 | 15 |
nephrogenic mesenchyme | 3.14e-08 | 15 |
segment of respiratory tract | 3.39e-08 | 47 |
primitive nephron | 7.38e-08 | 7 |
renal glomerulus | 7.38e-08 | 7 |
renal corpuscle | 7.38e-08 | 7 |
glomerular capsule | 7.38e-08 | 7 |
metanephric mesenchyme | 7.38e-08 | 7 |
glomerular tuft | 7.38e-08 | 7 |
S-shaped body | 7.38e-08 | 7 |
renal vesicle | 7.38e-08 | 7 |
comma-shaped body | 7.38e-08 | 7 |
cortex | 8.65e-08 | 15 |
epithelial vesicle | 1.06e-07 | 78 |
excretory tube | 1.30e-07 | 16 |
kidney epithelium | 1.30e-07 | 16 |
kidney | 1.77e-07 | 26 |
kidney mesenchyme | 1.77e-07 | 26 |
upper urinary tract | 1.77e-07 | 26 |
kidney rudiment | 1.77e-07 | 26 |
kidney field | 1.77e-07 | 26 |
mesonephric epithelium | 8.31e-07 | 8 |
mesonephric tubule | 8.31e-07 | 8 |
nephric duct | 8.31e-07 | 8 |
renal duct | 8.31e-07 | 8 |
mesonephric duct | 8.31e-07 | 8 |
pronephric duct | 8.31e-07 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.