FFCP PHASE1:Hg19::chr14:38064307..38064323,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3169|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5021|TSSclassifier=S|UniProt=G3V4B9|association_with_transcript=0bp_to_ENST00000553751_5end|coexpression_cluster_id=C194|description=CAGE_peak_3_at_FOXA1_5end|id=chr14:38064307..38064323,-|ontology_enrichment_celltype=CL:0000066!2.23e-31!254;CL:0000223!1.60e-15!59;CL:0002076!1.73e-12!43;CL:0000082!3.89e-10!19;CL:0002368!8.53e-08!13|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000066,9.53e-12,253;CL:0000223,1.09e-08,58|ontology_enrichment_development_v019=UBERON:0009497;5.03e-10;13!UBERON:0004161;9.02e-09;11!UBERON:0001041;1.01e-07;30!UBERON:0006595;1.81e-07;86|ontology_enrichment_disease=DOID:305!6.19e-45!106;DOID:0050687!6.93e-42!143;DOID:162!2.23e-29!235;DOID:14566!1.73e-28!239;DOID:299!3.91e-13!25;DOID:1749!7.17e-11!14;DOID:7!2.54e-09!39;DOID:0050615!2.95e-09!16;DOID:1324!1.35e-08!15;DOID:0050686!3.54e-07!137|ontology_enrichment_disease_v019=DOID:5093;1.46e-13;4!DOID:1612;1.46e-13;4!DOID:1749;2.69e-09;14!DOID:7;2.43e-07;39!DOID:305;5.41e-07;106|ontology_enrichment_disease_v019_2=DOID:305,1.95e-19,106;DOID:0050687,1.16e-16,143;DOID:5093,1.44e-13,4;DOID:1612,1.44e-13,4;DOID:1749,3.10e-09,14;DOID:162,1.45e-08,235;DOID:7,2.03e-08,39;DOID:14566,3.36e-08,239|ontology_enrichment_uberon=UBERON:0004119!9.61e-30!169;UBERON:0000925!9.61e-30!169;UBERON:0006595!9.61e-30!169;UBERON:0004921!1.11e-29!129;UBERON:0004185!1.11e-29!129;UBERON:0001007!2.16e-27!155;UBERON:0001555!2.16e-27!155;UBERON:0007026!2.16e-27!155;UBERON:0000077!9.68e-23!130;UBERON:0005911!1.34e-20!82;UBERON:0001041!8.40e-19!98;UBERON:0000065!2.27e-17!53;UBERON:0008947!5.18e-16!38;UBERON:0003258!5.18e-16!38;UBERON:0001004!3.04e-15!72;UBERON:0005177!1.26e-14!107;UBERON:0005153!3.37e-14!37;UBERON:0000072!3.30e-13!46;UBERON:0009569!3.93e-13!113;UBERON:0002048!3.90e-12!22;UBERON:0000117!3.90e-12!22;UBERON:0000171!3.90e-12!22;UBERON:0000170!3.90e-12!22;UBERON:0005597!3.90e-12!22;UBERON:0000118!3.90e-12!22;UBERON:0005178!9.70e-12!34;UBERON:0002224!9.70e-12!34;UBERON:0003104!1.15e-11!238;UBERON:0009142!1.15e-11!238;UBERON:0005181!3.70e-11!35;UBERON:0000466!1.56e-10!126;UBERON:0004802!3.89e-10!19;UBERON:0000115!3.89e-10!19;UBERON:0005157!4.52e-10!51;UBERON:0000915!2.67e-09!52;UBERON:0003929!1.03e-08!54;UBERON:0009497!5.90e-08!25;UBERON:0000015!5.90e-08!25;UBERON:0002423!5.90e-08!25;UBERON:0006235!5.90e-08!25;UBERON:0004161!5.90e-08!25;UBERON:0009856!2.44e-07!26;UBERON:0002530!2.69e-07!59;UBERON:0000481!2.85e-07!347;UBERON:0001046!3.24e-07!19;UBERON:0000344!3.28e-07!12;UBERON:0007499!5.50e-07!25;UBERON:0001008!5.64e-07!45|ontology_enrichment_uberon_v019=UBERON:0004921;4.90e-12;33!UBERON:0000160;2.55e-11;17!UBERON:0005409;1.17e-10;22!UBERON:0002423;1.54e-09;25!UBERON:0002108;2.94e-09;4!UBERON:0006562;8.52e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0004921,8.56e-25,118;UBERON:0001007,4.62e-21,145;UBERON:0001555,4.62e-21,145;UBERON:0007026,4.62e-21,145;UBERON:0004119,1.35e-20,160;UBERON:0000925,1.35e-20,160;UBERON:0006595,1.35e-20,160;UBERON:0001041,1.26e-12,87;UBERON:0000160,1.39e-11,17;UBERON:0005911,2.76e-11,82;UBERON:0011216,6.41e-10,223;UBERON:0009569,9.18e-10,112;UBERON:0009497,1.12e-09,25;UBERON:0000015,1.12e-09,25;UBERON:0002423,1.12e-09,25;UBERON:0006235,1.12e-09,25;UBERON:0004161,1.12e-09,25;UBERON:0007499,1.19e-09,25;UBERON:0002108,1.61e-09,4;UBERON:0005409,2.18e-09,25;UBERON:0009856,3.36e-09,26;UBERON:0008835,5.28e-09,22;UBERON:0003894,5.28e-09,22;UBERON:0009854,1.54e-08,23;UBERON:0003929,3.01e-08,54;UBERON:0002100,2.41e-07,199;UBERON:0005153,3.13e-07,37;UBERON:0005177,3.43e-07,101;UBERON:0000915,6.83e-07,52|phase1_expression=0,0,0,0,0,0,0,0,0,0,2.79120467188971,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,0.6024118375565,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0.571994910780128,0.371457501329565,0,0,0,0,0.419499436209906,0.550236083880135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0.354920400119532,1.18009283054671,1.20505514941741,0.55146986366197,0.435758888184812,0.237270619111097,0.269662616320329,0.588664395376038,0,0.738155454624648,0,0.4115740113314,0,0,2.94848165003288,1.18157981336281,0,1.47586126251736,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,17.3844967551041,15.4527509177077,0,0,0,0,0.16798212819886,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0,0,0,0,0,0,0.300946099727719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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3169 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5021 | |||
|TSSclassifier=S | |||
|UniProt=G3V4B9 | |||
|association_with_transcript=0bp_to_ENST00000553751_5end | |||
|coexpression_cluster_id=C194 | |||
|description=CAGE_peak_3_at_FOXA1_5end | |||
|id=chr14:38064307..38064323,- | |||
|ontology_enrichment_celltype=CL:0000066!2.23e-31!254;CL:0000223!1.60e-15!59;CL:0002076!1.73e-12!43;CL:0000082!3.89e-10!19;CL:0002368!8.53e-08!13 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.53e-12,253;CL:0000223,1.09e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0009497;5.03e-10;13!UBERON:0004161;9.02e-09;11!UBERON:0001041;1.01e-07;30!UBERON:0006595;1.81e-07;86 | |||
|ontology_enrichment_disease=DOID:305!6.19e-45!106;DOID:0050687!6.93e-42!143;DOID:162!2.23e-29!235;DOID:14566!1.73e-28!239;DOID:299!3.91e-13!25;DOID:1749!7.17e-11!14;DOID:7!2.54e-09!39;DOID:0050615!2.95e-09!16;DOID:1324!1.35e-08!15;DOID:0050686!3.54e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:5093;1.46e-13;4!DOID:1612;1.46e-13;4!DOID:1749;2.69e-09;14!DOID:7;2.43e-07;39!DOID:305;5.41e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.95e-19,106;DOID:0050687,1.16e-16,143;DOID:5093,1.44e-13,4;DOID:1612,1.44e-13,4;DOID:1749,3.10e-09,14;DOID:162,1.45e-08,235;DOID:7,2.03e-08,39;DOID:14566,3.36e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.61e-30!169;UBERON:0000925!9.61e-30!169;UBERON:0006595!9.61e-30!169;UBERON:0004921!1.11e-29!129;UBERON:0004185!1.11e-29!129;UBERON:0001007!2.16e-27!155;UBERON:0001555!2.16e-27!155;UBERON:0007026!2.16e-27!155;UBERON:0000077!9.68e-23!130;UBERON:0005911!1.34e-20!82;UBERON:0001041!8.40e-19!98;UBERON:0000065!2.27e-17!53;UBERON:0008947!5.18e-16!38;UBERON:0003258!5.18e-16!38;UBERON:0001004!3.04e-15!72;UBERON:0005177!1.26e-14!107;UBERON:0005153!3.37e-14!37;UBERON:0000072!3.30e-13!46;UBERON:0009569!3.93e-13!113;UBERON:0002048!3.90e-12!22;UBERON:0000117!3.90e-12!22;UBERON:0000171!3.90e-12!22;UBERON:0000170!3.90e-12!22;UBERON:0005597!3.90e-12!22;UBERON:0000118!3.90e-12!22;UBERON:0005178!9.70e-12!34;UBERON:0002224!9.70e-12!34;UBERON:0003104!1.15e-11!238;UBERON:0009142!1.15e-11!238;UBERON:0005181!3.70e-11!35;UBERON:0000466!1.56e-10!126;UBERON:0004802!3.89e-10!19;UBERON:0000115!3.89e-10!19;UBERON:0005157!4.52e-10!51;UBERON:0000915!2.67e-09!52;UBERON:0003929!1.03e-08!54;UBERON:0009497!5.90e-08!25;UBERON:0000015!5.90e-08!25;UBERON:0002423!5.90e-08!25;UBERON:0006235!5.90e-08!25;UBERON:0004161!5.90e-08!25;UBERON:0009856!2.44e-07!26;UBERON:0002530!2.69e-07!59;UBERON:0000481!2.85e-07!347;UBERON:0001046!3.24e-07!19;UBERON:0000344!3.28e-07!12;UBERON:0007499!5.50e-07!25;UBERON:0001008!5.64e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;4.90e-12;33!UBERON:0000160;2.55e-11;17!UBERON:0005409;1.17e-10;22!UBERON:0002423;1.54e-09;25!UBERON:0002108;2.94e-09;4!UBERON:0006562;8.52e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,8.56e-25,118;UBERON:0001007,4.62e-21,145;UBERON:0001555,4.62e-21,145;UBERON:0007026,4.62e-21,145;UBERON:0004119,1.35e-20,160;UBERON:0000925,1.35e-20,160;UBERON:0006595,1.35e-20,160;UBERON:0001041,1.26e-12,87;UBERON:0000160,1.39e-11,17;UBERON:0005911,2.76e-11,82;UBERON:0011216,6.41e-10,223;UBERON:0009569,9.18e-10,112;UBERON:0009497,1.12e-09,25;UBERON:0000015,1.12e-09,25;UBERON:0002423,1.12e-09,25;UBERON:0006235,1.12e-09,25;UBERON:0004161,1.12e-09,25;UBERON:0007499,1.19e-09,25;UBERON:0002108,1.61e-09,4;UBERON:0005409,2.18e-09,25;UBERON:0009856,3.36e-09,26;UBERON:0008835,5.28e-09,22;UBERON:0003894,5.28e-09,22;UBERON:0009854,1.54e-08,23;UBERON:0003929,3.01e-08,54;UBERON:0002100,2.41e-07,199;UBERON:0005153,3.13e-07,37;UBERON:0005177,3.43e-07,101;UBERON:0000915,6.83e-07,52 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,2.79120467188971,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,0.6024118375565,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0.571994910780128,0.371457501329565,0,0,0,0,0.419499436209906,0.550236083880135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0.354920400119532,1.18009283054671,1.20505514941741,0.55146986366197,0.435758888184812,0.237270619111097,0.269662616320329,0.588664395376038,0,0.738155454624648,0,0.4115740113314,0,0,2.94848165003288,1.18157981336281,0,1.47586126251736,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,17.3844967551041,15.4527509177077,0,0,0,0,0.16798212819886,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,1.40354529212299,1.10497186723076,0,0,0,0,0.0770153371044148,0,0,0.211103257785751,0,0.170093705276516,0,0,0,0,0.509752546090077,0.831076008928724,0.223874754722178,0,0,0,0,0,0.824328093181778,0.0915694648183434,0.247528499761764,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0.826424576804891,0.576570202095319,0.382838137483752,1.31505115112215,0,0,0,0,0,0,0,0.286249773483982,0,0,0,0,0,0,0,0,0,0,0.202182481573316,1.58510321173008,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.577332676353072,0,2.17781969722645,0.753150406214233,0.43050537267123,1.68471475667626,0.886860307073351,0.689170200620878,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642352300414798,0.80719882876419,0,0,0,0,0,0,0.278406173895242,0,0,0,0,1.8714054040822,0,0.485442086998054,0,0.852408440419239,0,0,0,0,0,0.445234820091624,0,0.211125408127993,0.597743964753209,0.276283915531148,0.251932747854276,0,0,0,0.629078458031288,4.29650819221462,0.511572370226872,0.394573622547734,0,0,0,0,0,19.011226559222,5.59743999975653,0.724999575434793,3.07242310370849,2.54253650292766,0.945550727071745,0,0.291604613383254,0.173624994933292,0,0,0,0,0,0,1.19832309870889,0.975966209950223,0.153900517007594,0.113942055847001,0,0,0.108647371922008,0,0,0,0,0,0,0,0.19606253431774,0.167821586975843,0.37950746544837,0,0.210998064528027,0.652931232636591,0.282706142867882,0.432777279484182,1.99052386215701,1.23840590304675,3.05515072466813,0,0.247127877893006,0.313265848516366,0,0,0,0,0.391329237864179,0,0,2.41981432097328,0,0,0.751617097072463,1.03688191397247,0,0,0,0,0,0.693373365065693,0.694238953340524,2.25382514053069,0.522355239482415,0,0.171986032471617,0.677294319023596,0.877071805034227,0.246346371159628,1.26085721434945,0.176512253383001,0.225980740780532,0.548167698587004,0,0,0.977756913674015,0.400794101257669,2.98834192635094,0,0.432271251462318,0.458146384663663,0.514784993585894,0.576219191952599,1.49103042678519,1.88555227693436,0.135904206073614,0.104602846312333,0.407992870545287,0.288950589901519,0,0,0,0,0,0,0,0,0.998395002494955,0,0,0,0,0,2.04836273998782,1.89556474276683,1.14586024552114,0.78741985211799,0,0,0,0,0,0,0,0,0,3.68978156359193,0,0.0524545881349981,0.844802692155252,2.33073541132698,0.191915197319445,0,0,0,0,0,0,0,0,0,0.113312091520126,1.90517903781507,1.32506888912221,0,0,0.513260513652988,0.704815022316672,0.747511887973863,0.78602152549833,0.828478110694391,0,0,0,0.638341257770182,0,0,0,0,0.785270481251171,0,0,0,0,0.110929051536852,0,0.276697269872462,0,0.303298235083296,0,0.470531639396343,0,0.434763085832475,0,0,0,0,0,0,0,0.302461847526478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,1.28664954824955,1.04397716786085,0.453411851024545,0.231522474323834,0,0.71635536432595,0,0.657852148736121,0.176689145945881,0,0,0.512483037175893,0,0.303859956177382,0,0,0.265729680626726,0,0.327609848846413,0.737318726261158,0.845248493434508,0,0.320075189082423,0,1.70254786070051,0,0.979156554036111,0,0,0.323474434190045,0.157265941855896,0,0,1.2754495206101,0,1.11728983594649,0,0,2.40171224485641,0,0.3062454773532,0,0,0,0,0,0,0,0,1.66851121451744,0.589848616738702,0.183428598521679,0.462102664601353,0,0,0,0.0752103283492573,0,0,0,0.327543835020193,1.6264169483875,0,0,0,0,0,0,0.992422356778588,0,2.8107734080711,0,0,0,0.227662191351298,0,0.460935950223117,0,0,0,1.53651993149159,0.556157009460346,1.25588948560822,0,0.280272163313789,5.47895232305697,1.07963795609311,0.9555033757741,0.142953088353313,0,0,0,0,0,0,0.691259661814092,1.29068207646083,0,0.0852134047591577,0.423387050190929,1.14553434272025,0.31020638566432,0,0.44742172719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| |||
|short_description=p3@FOXA1 | |||
}} |
Revision as of 04:30, 11 September 2013
Short description: | p3@FOXA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_FOXA1_5end |
Coexpression cluster: | C194_MCF7_breast_prostate_Intestinal_diffuse_Wilms_Alveolar |
Association with transcript: | 0bp_to_ENST00000553751_5end |
EntrezGene: | FOXA1 |
HGNC: | 5021 |
UniProt: | G3V4B9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.53e-12 | 253 |
endodermal cell | 1.09e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 8.56e-25 | 118 |
digestive system | 4.62e-21 | 145 |
digestive tract | 4.62e-21 | 145 |
primitive gut | 4.62e-21 | 145 |
endoderm-derived structure | 1.35e-20 | 160 |
endoderm | 1.35e-20 | 160 |
presumptive endoderm | 1.35e-20 | 160 |
foregut | 1.26e-12 | 87 |
intestine | 1.39e-11 | 17 |
endo-epithelium | 2.76e-11 | 82 |
organ system subdivision | 6.41e-10 | 223 |
subdivision of trunk | 9.18e-10 | 112 |
epithelium of foregut-midgut junction | 1.12e-09 | 25 |
anatomical boundary | 1.12e-09 | 25 |
hepatobiliary system | 1.12e-09 | 25 |
foregut-midgut junction | 1.12e-09 | 25 |
septum transversum | 1.12e-09 | 25 |
epithelial sac | 1.19e-09 | 25 |
small intestine | 1.61e-09 | 4 |
gastrointestinal system | 2.18e-09 | 25 |
sac | 3.36e-09 | 26 |
hepatic diverticulum | 5.28e-09 | 22 |
liver primordium | 5.28e-09 | 22 |
digestive tract diverticulum | 1.54e-08 | 23 |
gut epithelium | 3.01e-08 | 54 |
trunk | 2.41e-07 | 199 |
epithelial bud | 3.13e-07 | 37 |
trunk region element | 3.43e-07 | 101 |
thoracic segment of trunk | 6.83e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.95e-19 | 106 |
cell type cancer | 1.16e-16 | 143 |
thoracic cancer | 1.44e-13 | 4 |
breast cancer | 1.44e-13 | 4 |
squamous cell carcinoma | 3.10e-09 | 14 |
cancer | 1.45e-08 | 235 |
disease of anatomical entity | 2.03e-08 | 39 |
disease of cellular proliferation | 3.36e-08 | 239 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.