FFCP PHASE1:Hg19::chr1:62660501..62660564,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54596|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25595|TSSclassifier=S|UniProt=Q5T7N2|association_with_transcript=0bp_to_ENST00000498273_5end|coexpression_cluster_id=C49|description=CAGE_peak_1_at_L1TD1_5end|id=chr1:62660501..62660564,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002322;1.33e-09;5!CL:0000349;4.73e-09;19!CL:0000039;5.79e-09;7!CL:0000586;5.79e-09;7|ontology_enrichment_celltype_v019_2=CL:0002322,1.36e-09,5;CL:0000349,4.79e-09,19;CL:0000039,5.65e-09,7;CL:0000586,5.65e-09,7|ontology_enrichment_development_v019=UBERON:0009117;1.45e-09;10!UBERON:0005564;1.45e-09;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3095;1.18e-08;22!DOID:2994;1.18e-08;22|ontology_enrichment_disease_v019_2=DOID:3095,1.14e-08,22;DOID:2994,1.14e-08,22|ontology_enrichment_uberon=UBERON:0005631!9.78e-11!14;UBERON:0000158!9.78e-11!14;UBERON:0000468!1.38e-08!659;UBERON:0003124!1.56e-07!7|ontology_enrichment_uberon_v019=UBERON:0005631;2.19e-10;10!UBERON:0000158;2.19e-10;10!UBERON:0000922;4.23e-09;49!UBERON:0000478;6.27e-08;24!UBERON:0001987;1.26e-07;4!UBERON:0000059;1.30e-07;11!UBERON:0000473;1.52e-07;8|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.95e-16,14;UBERON:0000158,3.95e-16,14;UBERON:0003124,6.06e-12,7;UBERON:0000478,6.33e-08,24;UBERON:0001987,1.27e-07,4;UBERON:0004340,1.27e-07,4;UBERON:0000059,1.28e-07,11;UBERON:0000473,1.53e-07,8|phase1_expression=0.54503513781167,2.35510576280081,0.422863212287913,0,0,0,0,0,0,0.737201809504527,0.697801167972428,98.5170588307077,96.538714031614,0,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0.136874425072884,0.87879847716362,0,0,0,0.393364276848904,0.767658796194425,4.64448369948228,7.35536979583142,0.90361775633475,0.739508020333575,0,0,0,0,0,0,0,0.971680998056939,0,0.581592955118259,0.377875943688809,0.970336244751265,0.464858073811369,0.411167888021826,0.309706370895104,0.28769239232215,0.512321413058201,0,0,0.645484683583826,0,0.752969358170419,0.818718450173537,2.02251136000576,1.22433556948361,1.28371610830437,0,0,0,0,0,0,0,0,0,0,0,0.736555271975129,0,3.59133986730301,0.850417199860174,2.30624510059213,0.112328631146495,0,0,17.3857773682162,10.3436672143527,24.1116682969317,0,0,0,0.853460445133014,0.400395987036012,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0.486634870302636,3.40325341790644,0.443458794925128,0.43917392846563,2.22664428346111,2.5500670180478,0.741568885568859,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.92484646928281,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0.151357427644931,0,0.234321431833797,0.312160076830321,0.570471821544449,0.747243402759005,0.469737994575059,0.809364721840658,0.98315564691574,0,0.245668634623536,0,0,0,2.73048408581408,0,0.841680569770331,0.500474079487857,0,0,0,0.45071417671979,0,1.79389635688862,0.213557388818567,0.211931901159562,0,0,0.257640540045629,0,0,0.0974370051611986,0.504867548488229,0.0920498986422993,0,0,0.10075209822764,0.847802961552438,9.85630351132814,1.09098448236334,3.72845974005705,595.109712206296,708.106552141696,538.326537314479,248.786532036889,492.782621760102,386.87600062038,3.12899064659632,9.00537313470039,0,2.3218396401599,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,1.02940686179115,17.2307948091542,1.1240175325762,0.201057944823262,22.6841690638398,0,0,0,0,0.587043471179108,0,0,0,0,0,0,0,0,0,2.18376766658517,0.567100388969546,25.7032960157175,0.290633938513962,0,0,0,0,0,0,0,0.381988425558278,0,0,0.102827492703324,0,0,4.37311228946907,5.23152082599936,7.11381372463215,0,0,8.45302752556,0.531876233169741,0,1.02882949704857,0,0,0,0,0,8.46914079163711,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0.157702415033935,0.937131319941706,0,0,2.0694614258501,0,0.368738337083406,0,2.15381273209015,0,1.44737618286021,0.862856803274467,0,72.7506171471023,194.729464227282,94.3457715188602,0.248107807818777,15.3461973288062,4.77122160536225,0.512556597022804,0,0.160853921143607,0,1.54209693802656,0,0.410635780069046,0,4.29978400301849,1.93375119346596,2.00506470303285,1.38121483403844,0,0,0,0,0.924184045252977,0,1.46139224653261,2.21658420675039,0,0,0,0,0.270946437543853,0.501689773854853,0.764628819135115,0,0.447749509444357,0,0,0.769350375349168,0,9.43597344526479,13.4983725258516,0,0,4.59412430396938,4.55042172225565,0,0.096670718292122,3.54311819363682,2.6095624703442,6.34048233428841,9.88266252788117,1.59518363305651,0.596586391912706,0.0890320356467374,1.15699440752685,0.192190067365106,1.91419068741876,0.4046311234222,0,0,0,0,0,0,0,0,9.30395923399168,0,0,0,0.855877976067841,0,0,4.13706652441624,0.54907405947211,1.17812402345686,0,0,0,2.92580243453754,0,0,0,0,0,0,0,0,0.578775534266688,5.24715801637306,0,0,0,0.143411352204052,0,0,0.709522128141196,0.844430541190656,0,0,0.34993472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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=54596 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25595 | |||
|TSSclassifier=S | |||
|UniProt=Q5T7N2 | |||
|association_with_transcript=0bp_to_ENST00000498273_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_1_at_L1TD1_5end | |||
|id=chr1:62660501..62660564,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.33e-09;5!CL:0000349;4.73e-09;19!CL:0000039;5.79e-09;7!CL:0000586;5.79e-09;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.36e-09,5;CL:0000349,4.79e-09,19;CL:0000039,5.65e-09,7;CL:0000586,5.65e-09,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.45e-09;10!UBERON:0005564;1.45e-09;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;1.18e-08;22!DOID:2994;1.18e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.14e-08,22;DOID:2994,1.14e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0005631!9.78e-11!14;UBERON:0000158!9.78e-11!14;UBERON:0000468!1.38e-08!659;UBERON:0003124!1.56e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.19e-10;10!UBERON:0000158;2.19e-10;10!UBERON:0000922;4.23e-09;49!UBERON:0000478;6.27e-08;24!UBERON:0001987;1.26e-07;4!UBERON:0000059;1.30e-07;11!UBERON:0000473;1.52e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.95e-16,14;UBERON:0000158,3.95e-16,14;UBERON:0003124,6.06e-12,7;UBERON:0000478,6.33e-08,24;UBERON:0001987,1.27e-07,4;UBERON:0004340,1.27e-07,4;UBERON:0000059,1.28e-07,11;UBERON:0000473,1.53e-07,8 | |||
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| |||
|short_description=p1@L1TD1 | |||
}} |
Revision as of 06:21, 12 September 2013
Short description: | p1@L1TD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_L1TD1_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000498273_5end |
EntrezGene: | L1TD1 |
HGNC: | 25595 |
UniProt: | Q5T7N2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.36e-09 | 5 |
extraembryonic cell | 4.79e-09 | 19 |
germ line cell | 5.65e-09 | 7 |
germ cell | 5.65e-09 | 7 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.95e-16 | 14 |
membranous layer | 3.95e-16 | 14 |
chorion | 6.06e-12 | 7 |
extraembryonic structure | 6.33e-08 | 24 |
placenta | 1.27e-07 | 4 |
allantois | 1.27e-07 | 4 |
large intestine | 1.28e-07 | 11 |
testis | 1.53e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.14e-08 | 22 |
germ cell cancer | 1.14e-08 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.