FFCP PHASE1:Hg19::chr1:1293904..1293949,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54587|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7542|TSSclassifier=S|UniProt=Q9BRK3|association_with_transcript=0bp_to_ENST00000309212,ENST00000342753,ENST00000445648,NM_032348,uc001aew.2,uc001aex.3,uc001aey.3,uc001aez.2,uc010nyl.1_5end|coexpression_cluster_id=C1421|description=CAGE_peak_1_at_MXRA8_5end|id=chr1:1293904..1293949,-|ontology_enrichment_celltype=CL:0000055!2.85e-40!180;CL:0000057!1.28e-23!75;CL:0000183!4.49e-17!59;CL:0000680!1.05e-16!57;CL:0000056!1.05e-16!57;CL:0000355!1.05e-16!57;CL:0000187!1.92e-15!54;CL:0000393!3.12e-14!60;CL:0000211!3.12e-14!60;CL:0000192!9.66e-13!42;CL:0000514!9.66e-13!42;CL:0002620!1.53e-10!23;CL:0000359!1.20e-09!32;CL:0000136!1.23e-08!15;CL:0002334!4.36e-08!12|ontology_enrichment_celltype_v019=CL:0002620;7.65e-11;23!CL:0000192;4.46e-10;43!CL:0000057;8.72e-10;73!CL:0000359;2.13e-09;32!CL:0000187;2.98e-09;55!CL:0002320;3.93e-09;188!CL:0000134;6.99e-09;55!CL:0000723;2.12e-08;61!CL:0000349;2.20e-08;19!CL:0002334;2.60e-08;12!CL:0000393;3.26e-08;61!CL:0000211;3.26e-08;61!CL:0000048;3.59e-08;58!CL:0000136;1.00e-07;13!CL:0000034;7.39e-07;69|ontology_enrichment_celltype_v019_2=CL:0000057,5.99e-25,76;CL:0000680,9.89e-18,58;CL:0000056,9.89e-18,58;CL:0000355,9.89e-18,58;CL:0000187,2.02e-16,55;CL:0000393,3.80e-15,61;CL:0000211,3.80e-15,61;CL:0000192,1.26e-13,43;CL:0000514,1.26e-13,43;CL:0002620,7.64e-11,23;CL:0000359,6.40e-10,32;CL:0000136,7.09e-09,15;CL:0000349,2.15e-08,19;CL:0002334,2.62e-08,12;CL:0000048,1.28e-07,427;CL:0000723,8.16e-07,433|ontology_enrichment_development_v019=CL:0000514;4.46e-10;43!CL:0000355;8.32e-10;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!2.48e-22!83;UBERON:0002329!2.48e-22!83;UBERON:0003077!2.48e-22!83;UBERON:0003059!2.48e-22!83;UBERON:0007282!2.48e-22!83;UBERON:0009618!2.48e-22!83;UBERON:0007285!2.48e-22!83;UBERON:0000475!2.67e-21!365;UBERON:0004290!2.95e-19!70;UBERON:0005256!1.93e-18!143;UBERON:0002385!8.34e-17!63;UBERON:0001015!8.34e-17!63;UBERON:0000383!8.34e-17!63;UBERON:0001134!9.07e-17!61;UBERON:0002036!9.07e-17!61;UBERON:0003082!9.07e-17!61;UBERON:0000486!2.18e-16!82;UBERON:0002100!1.76e-14!216;UBERON:0000481!3.55e-14!347;UBERON:0000468!1.46e-11!659;UBERON:0000119!7.44e-09!312;UBERON:0004923!9.10e-09!57;UBERON:0000483!1.25e-08!309;UBERON:0003104!1.29e-08!238;UBERON:0009142!1.29e-08!238;UBERON:0003102!1.65e-08!95;UBERON:0002199!2.03e-08!45;UBERON:0002416!2.03e-08!45;UBERON:0000479!4.12e-08!787;UBERON:0004872!1.18e-07!84;UBERON:0000467!1.33e-07!625;UBERON:0001013!1.37e-07!14;UBERON:0000480!2.04e-07!626|ontology_enrichment_uberon_v019=UBERON:0002384;2.41e-09;198!UBERON:0002385;4.14e-08;31!UBERON:0001015;4.14e-08;31!UBERON:0000383;4.14e-08;31!UBERON:0002204;6.62e-08;70!UBERON:0001013;8.57e-08;14|ontology_enrichment_uberon_v019_2=UBERON:0007524,9.81e-21,73;UBERON:0007503,2.16e-20,78;UBERON:0002329,2.26e-20,71;UBERON:0003059,2.26e-20,71;UBERON:0007282,2.26e-20,71;UBERON:0004290,2.26e-20,71;UBERON:0009618,2.26e-20,71;UBERON:0003077,3.51e-20,72;UBERON:0007285,3.51e-20,72;UBERON:0002385,7.93e-18,64;UBERON:0001015,7.93e-18,64;UBERON:0000383,7.93e-18,64;UBERON:0001134,8.59e-18,62;UBERON:0002036,8.59e-18,62;UBERON:0003082,8.59e-18,62;UBERON:0003104,1.14e-17,160;UBERON:0009142,1.14e-17,160;UBERON:0000486,2.52e-17,83;UBERON:0005256,3.18e-14,122;UBERON:0002100,3.60e-11,199;UBERON:0004923,3.42e-10,66;UBERON:0002199,4.28e-09,46;UBERON:0002416,4.28e-09,46;UBERON:0000119,4.88e-09,309;UBERON:0000483,8.35e-09,306;UBERON:0003102,1.04e-08,99;UBERON:0000479,3.07e-08,773;UBERON:0001013,8.58e-08,14;UBERON:0004872,3.00e-07,83;UBERON:0002097,3.71e-07,41;UBERON:0010314,3.95e-07,132;UBERON:0000490,7.46e-07,148;UBERON:0005631,9.65e-07,14;UBERON:0000158,9.65e-07,14|phase1_expression=621.703413863845,480.441575611366,505.603447492249,536.392879172779,457.688160693543,519.041421839719,167.177919591085,192.042841521757,285.737077250623,75.6860524424647,245.626011126294,199.655414126977,357.140488521326,447.167833244648,420.211872422997,113.62294975035,115.717349380604,121.961785094691,138.572914856504,105.268504655654,225.828765207388,239.165952487781,51.5224776835902,74.3228128145761,45.5719781729134,0,0,0.0787107813136792,0,0.383829398097213,2.16742572642506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02699751316684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0.526768169550154,0,0.393010762749165,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0,0,1.18629250529648,0.535081656179426,0,0.226618685395132,0,0,0,1.27426165729639,0.651083453856419,0,1.20460095262218,0.76791966692651,0,0.236777252044017,0,0,0,1.44824403882799,141.407982462098,124.750359904876,45.3912094544533,196.984338049589,273.730499207196,442.795808463238,75.5521649698544,204.87328039741,112.780036876733,138.137414619177,124.549726112853,42.5027099990077,2.18577172975525,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=54587 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7542 | |||
|TSSclassifier=S | |||
|UniProt=Q9BRK3 | |||
|association_with_transcript=0bp_to_ENST00000309212,ENST00000342753,ENST00000445648,NM_032348,uc001aew.2,uc001aex.3,uc001aey.3,uc001aez.2,uc010nyl.1_5end | |||
|coexpression_cluster_id=C1421 | |||
|description=CAGE_peak_1_at_MXRA8_5end | |||
|id=chr1:1293904..1293949,- | |||
|ontology_enrichment_celltype=CL:0000055!2.85e-40!180;CL:0000057!1.28e-23!75;CL:0000183!4.49e-17!59;CL:0000680!1.05e-16!57;CL:0000056!1.05e-16!57;CL:0000355!1.05e-16!57;CL:0000187!1.92e-15!54;CL:0000393!3.12e-14!60;CL:0000211!3.12e-14!60;CL:0000192!9.66e-13!42;CL:0000514!9.66e-13!42;CL:0002620!1.53e-10!23;CL:0000359!1.20e-09!32;CL:0000136!1.23e-08!15;CL:0002334!4.36e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0002620;7.65e-11;23!CL:0000192;4.46e-10;43!CL:0000057;8.72e-10;73!CL:0000359;2.13e-09;32!CL:0000187;2.98e-09;55!CL:0002320;3.93e-09;188!CL:0000134;6.99e-09;55!CL:0000723;2.12e-08;61!CL:0000349;2.20e-08;19!CL:0002334;2.60e-08;12!CL:0000393;3.26e-08;61!CL:0000211;3.26e-08;61!CL:0000048;3.59e-08;58!CL:0000136;1.00e-07;13!CL:0000034;7.39e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.99e-25,76;CL:0000680,9.89e-18,58;CL:0000056,9.89e-18,58;CL:0000355,9.89e-18,58;CL:0000187,2.02e-16,55;CL:0000393,3.80e-15,61;CL:0000211,3.80e-15,61;CL:0000192,1.26e-13,43;CL:0000514,1.26e-13,43;CL:0002620,7.64e-11,23;CL:0000359,6.40e-10,32;CL:0000136,7.09e-09,15;CL:0000349,2.15e-08,19;CL:0002334,2.62e-08,12;CL:0000048,1.28e-07,427;CL:0000723,8.16e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000514;4.46e-10;43!CL:0000355;8.32e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.48e-22!83;UBERON:0002329!2.48e-22!83;UBERON:0003077!2.48e-22!83;UBERON:0003059!2.48e-22!83;UBERON:0007282!2.48e-22!83;UBERON:0009618!2.48e-22!83;UBERON:0007285!2.48e-22!83;UBERON:0000475!2.67e-21!365;UBERON:0004290!2.95e-19!70;UBERON:0005256!1.93e-18!143;UBERON:0002385!8.34e-17!63;UBERON:0001015!8.34e-17!63;UBERON:0000383!8.34e-17!63;UBERON:0001134!9.07e-17!61;UBERON:0002036!9.07e-17!61;UBERON:0003082!9.07e-17!61;UBERON:0000486!2.18e-16!82;UBERON:0002100!1.76e-14!216;UBERON:0000481!3.55e-14!347;UBERON:0000468!1.46e-11!659;UBERON:0000119!7.44e-09!312;UBERON:0004923!9.10e-09!57;UBERON:0000483!1.25e-08!309;UBERON:0003104!1.29e-08!238;UBERON:0009142!1.29e-08!238;UBERON:0003102!1.65e-08!95;UBERON:0002199!2.03e-08!45;UBERON:0002416!2.03e-08!45;UBERON:0000479!4.12e-08!787;UBERON:0004872!1.18e-07!84;UBERON:0000467!1.33e-07!625;UBERON:0001013!1.37e-07!14;UBERON:0000480!2.04e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.41e-09;198!UBERON:0002385;4.14e-08;31!UBERON:0001015;4.14e-08;31!UBERON:0000383;4.14e-08;31!UBERON:0002204;6.62e-08;70!UBERON:0001013;8.57e-08;14 | |||
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|phase1_expression=621.703413863845,480.441575611366,505.603447492249,536.392879172779,457.688160693543,519.041421839719,167.177919591085,192.042841521757,285.737077250623,75.6860524424647,245.626011126294,199.655414126977,357.140488521326,447.167833244648,420.211872422997,113.62294975035,115.717349380604,121.961785094691,138.572914856504,105.268504655654,225.828765207388,239.165952487781,51.5224776835902,74.3228128145761,45.5719781729134,0,0,0.0787107813136792,0,0.383829398097213,2.16742572642506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02699751316684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0.526768169550154,0,0.393010762749165,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0,0,1.18629250529648,0.535081656179426,0,0.226618685395132,0,0,0,1.27426165729639,0.651083453856419,0,1.20460095262218,0.76791966692651,0,0.236777252044017,0,0,0,1.44824403882799,141.407982462098,124.750359904876,45.3912094544533,196.984338049589,273.730499207196,442.795808463238,75.5521649698544,204.87328039741,112.780036876733,138.137414619177,124.549726112853,42.5027099990077,2.18577172975525,0,0,0,0,0,0,0,0.198762407366705,7.74211135595512,0,0,0,0.275118041940067,1.46296476575767,0.258416759169329,2.13459757612026,0.33472061276467,0,0,0.976248230192678,0,0,0,0.44905874525234,0.563057402416611,0,0,2.74802615895611,0,0,0.872188104285069,240.534424620534,174.876736608785,146.44455397942,502.82459617267,218.475723434188,158.111083240131,78.9942568399817,122.100436466494,110.479917566917,16.9735446807807,14.2211855708709,158.773941599533,178.6145365888,143.639037714117,141.720674880966,56.4767103329005,173.360469440089,59.0695528178137,40.7919819807691,36.6576605492869,125.758969493014,133.275234283268,264.100696685256,326.700785752565,343.948298626473,68.262102145352,222.771623963034,99.6549794608072,105.224675212322,64.0018106768463,275.677945913166,328.24842930075,385.360621095421,25.7491055773248,400.935835764606,242.814751086711,165.518814805618,554.568345563975,185.49455262919,364.30372362452,352.3192090357,706.160174097458,430.379251797014,348.863476005366,225.522251673633,212.564564716738,753.685364912772,283.314900216124,229.5850419884,1.15956511897978,1.09098448236334,0,6.70855383712775,4.24095258628753,13.7108852586032,30.0617059544574,12.1114008420302,5.47466038613745,245.625765757811,486.933390212014,244.498810793891,374.744917921807,389.093040619907,0,0,0,0,0,0,0,0,0,0,81.3402288059986,121.414333342763,323.419165048192,0,0.982827216677626,9.45263850690247,0,3.68965315629341,47.1811478320945,0.219500570817251,0,0.100528972411631,5.09236448371913,92.5295587081322,88.3944567487642,60.6191636506148,95.062932079563,108.015998696956,0.288732895522148,0,0,0,0,0.246217006087397,0,0,9.3733833986777,10.0789276919316,1.27597587518148,0,0,3.4504441124869,0,0,0.829312462163088,1.15295962733569,0.88369703398466,1.90493682876507,0,0,58.1646316477198,12.7506090952121,0,0,34.5363739783711,52.7511683288269,26.8418126104677,66.4456618994978,2485.71229867058,77.767853235152,208.495483402538,315.142533841439,181.073991480548,158.871027866072,177.970015582754,126.821480374777,631.068927070248,129.248732874581,67.1016539645094,133.271980778455,59.3963904700072,153.734082300389,63.6219424778215,114.868966868184,0,0,0,92.2555693642593,222.832155518181,171.164286048862,160.996813014348,221.708952031864,231.346764505945,0.112085143993527,0,0,0,14.9915828291253,14.3153839243384,13.1459098172208,12.8987524307449,9.56908127479745,0,0,0,499.967828755495,533.181775449616,205.6188879644,260.795460359632,261.041610610248,242.546314322192,171.729314379318,272.055274153858,438.896482828051,593.935429218978,195.946551567954,250.373330879633,185.930934961697,456.999901518036,333.878551367963,0.206768026122887,0,0.106727557803444,161.26386800941,309.569917489525,307.833318609615,474.134020741683,621.520991816653,751.607732891771,403.894598453969,438.533112450165,419.828734184816,635.229324384561,196.000520823175,281.257772895993,150.949712753381,159.411109759372,205.227528360288,0.966875596732978,2.80709058424599,0.368323955743585,119.521840539356,119.087623876393,242.711292089894,35.6447694196855,18.560696242164,178.047397603146,68.6854355870325,24.2768746453614,0,0.340187410553031,28.9327327576867,37.0145406456694,201.584149532627,310.044280242299,5.86215428003588,19.9458242142894,87.5350290963717,0,0,58.4706285265367,121.365418908891,64.7503005381963,31.8396725991462,64.0986253728404,62.5422009398057,9.76251414593493,11.7010844286574,176.752322828576,128.572055328522,60.6951551431699,75.5238079652557,37.4915477157923,160.915526812674,162.273680490022,62.3858912685859,179.310519792529,0.826424576804891,1.15314040419064,2.04180339991335,0.809262246844399,26.4961963099453,434.441038626283,188.897100213523,102.575182198638,146.384158337181,135.709546763711,197.555617564779,33.4912234976259,94.9003841867152,74.3491648089006,80.6365720297779,236.705456962984,252.056063951979,241.516265175786,105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| |||
|short_description=p1@MXRA8 | |||
}} |
Revision as of 23:57, 11 September 2013
Short description: | p1@MXRA8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_MXRA8_5end |
Coexpression cluster: | C1421_Mesenchymal_Preadipocyte_Fibroblast_tenocyte_Adipocyte_Osteoblast_Nucleus |
Association with transcript: | 0bp_to_ENST00000309212, ENST00000342753, ENST00000445648, NM_032348, uc001aew.2, uc001aex.3, uc001aey.3, uc001aez.2, uc010nyl.1_5end |
EntrezGene: | MXRA8 |
HGNC: | 7542 |
UniProt: | Q9BRK3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.99e-25 | 76 |
muscle precursor cell | 9.89e-18 | 58 |
myoblast | 9.89e-18 | 58 |
multi-potent skeletal muscle stem cell | 9.89e-18 | 58 |
muscle cell | 2.02e-16 | 55 |
electrically responsive cell | 3.80e-15 | 61 |
electrically active cell | 3.80e-15 | 61 |
smooth muscle cell | 1.26e-13 | 43 |
smooth muscle myoblast | 1.26e-13 | 43 |
skin fibroblast | 7.64e-11 | 23 |
vascular associated smooth muscle cell | 6.40e-10 | 32 |
fat cell | 7.09e-09 | 15 |
extraembryonic cell | 2.15e-08 | 19 |
preadipocyte | 2.62e-08 | 12 |
multi fate stem cell | 1.28e-07 | 427 |
somatic stem cell | 8.16e-07 | 433 |
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