UBERON:0002101: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 10: | Line 10: | ||
|has_quality= | |has_quality= | ||
|id=UBERON:0002101 | |id=UBERON:0002101 | ||
|is_a=UBERON:0004708 | |is_a=UBERON:0004708 | ||
|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
Revision as of 11:10, 12 September 2014
| Name: | limb | ||
|---|---|---|---|
| Definition: | "A paired appendage that is evolved from a paired fin. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the girdle and its parts." [UBERONREF:0000003, Wikipedia:Limb] | ||
| Xrefs: |
| ||
| Synonyms: |
"flipper" NARROW SENSU [] "free limb" EXACT [FMA:24875] "limb sensu vertebrata" EXACT [MAT:0000090] "tetrapod limb" EXACT [] | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004708(paired limb/fin) |
|---|---|
| develops_from: | UBERON:0004347(limb bud) |
Children
| is a: | UBERON:0002102 (forelimb),UBERON:0002103 (hindlimb),UBERON:0003285 (limb of embryo) |
|---|---|
| part of: | UBERON:0001419 (skin of limb),UBERON:0002428 (limb bone),UBERON:0002472 (stylopod),UBERON:0002529 (limb segment),UBERON:0003587 (limb connective tissue),UBERON:0003606 (limb long bone),UBERON:0003657 (limb joint),UBERON:0003661 (limb muscle),UBERON:0004381 (skeleton of limb),UBERON:0004480 (musculature of limb),UBERON:0009749 (limb mesenchyme),UBERON:0010712 (limb skeleton subdivision),UBERON:0011139 (synovial limb joint),UBERON:0015061 (limb endochondral element) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
... further results Mouse (Mus musculus)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002101 (limb), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_19a8961967130a69efa8c10dacd7121c | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_19a8961967130a69efa8c10dacd7121c | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_19a8961967130a69efa8c10dacd7121c | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_19a8961967130a69efa8c10dacd7121c | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_19a8961967130a69efa8c10dacd7121c | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_19a8961967130a69efa8c10dacd7121c | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_19a8961967130a69efa8c10dacd7121c | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_19a8961967130a69efa8c10dacd7121c | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_19a8961967130a69efa8c10dacd7121c | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_19a8961967130a69efa8c10dacd7121c | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_19a8961967130a69efa8c10dacd7121c | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_19a8961967130a69efa8c10dacd7121c | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_19a8961967130a69efa8c10dacd7121c | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_19a8961967130a69efa8c10dacd7121c | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_19a8961967130a69efa8c10dacd7121c | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_19a8961967130a69efa8c10dacd7121c | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_19a8961967130a69efa8c10dacd7121c | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_19a8961967130a69efa8c10dacd7121c | p@chr7:128483294..128483304, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_57df4c38a66d67975f18f3baa77006ee | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_57df4c38a66d67975f18f3baa77006ee | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_57df4c38a66d67975f18f3baa77006ee | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_57df4c38a66d67975f18f3baa77006ee | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_57df4c38a66d67975f18f3baa77006ee | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_57df4c38a66d67975f18f3baa77006ee | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_57df4c38a66d67975f18f3baa77006ee | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_57df4c38a66d67975f18f3baa77006ee | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_57df4c38a66d67975f18f3baa77006ee | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_57df4c38a66d67975f18f3baa77006ee | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_57df4c38a66d67975f18f3baa77006ee | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_57df4c38a66d67975f18f3baa77006ee | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_57df4c38a66d67975f18f3baa77006ee | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_57df4c38a66d67975f18f3baa77006ee | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_57df4c38a66d67975f18f3baa77006ee | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_57df4c38a66d67975f18f3baa77006ee | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_57df4c38a66d67975f18f3baa77006ee | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_57df4c38a66d67975f18f3baa77006ee | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_57df4c38a66d67975f18f3baa77006ee | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_57df4c38a66d67975f18f3baa77006ee | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_57df4c38a66d67975f18f3baa77006ee | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_57df4c38a66d67975f18f3baa77006ee | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_57df4c38a66d67975f18f3baa77006ee | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_57df4c38a66d67975f18f3baa77006ee | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_57df4c38a66d67975f18f3baa77006ee | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_57df4c38a66d67975f18f3baa77006ee | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_57df4c38a66d67975f18f3baa77006ee | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_57df4c38a66d67975f18f3baa77006ee | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_57df4c38a66d67975f18f3baa77006ee | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_57df4c38a66d67975f18f3baa77006ee | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_57df4c38a66d67975f18f3baa77006ee | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_57df4c38a66d67975f18f3baa77006ee | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_57df4c38a66d67975f18f3baa77006ee | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_57df4c38a66d67975f18f3baa77006ee | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_57df4c38a66d67975f18f3baa77006ee | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_57df4c38a66d67975f18f3baa77006ee | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_57df4c38a66d67975f18f3baa77006ee | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_57df4c38a66d67975f18f3baa77006ee | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_57df4c38a66d67975f18f3baa77006ee | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_57df4c38a66d67975f18f3baa77006ee | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_57df4c38a66d67975f18f3baa77006ee | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_57df4c38a66d67975f18f3baa77006ee | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_57df4c38a66d67975f18f3baa77006ee | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_57df4c38a66d67975f18f3baa77006ee | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_57df4c38a66d67975f18f3baa77006ee | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_57df4c38a66d67975f18f3baa77006ee | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_57df4c38a66d67975f18f3baa77006ee | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_57df4c38a66d67975f18f3baa77006ee | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_57df4c38a66d67975f18f3baa77006ee | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_57df4c38a66d67975f18f3baa77006ee | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_57df4c38a66d67975f18f3baa77006ee | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_57df4c38a66d67975f18f3baa77006ee | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_57df4c38a66d67975f18f3baa77006ee | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_57df4c38a66d67975f18f3baa77006ee | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_57df4c38a66d67975f18f3baa77006ee | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_57df4c38a66d67975f18f3baa77006ee | p77@XIRP2 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_f3ff2c558a075dd2b7f1b3a097418780 | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr2:152590465..152590472, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_f3ff2c558a075dd2b7f1b3a097418780 | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr2:179656442..179656451, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_f3ff2c558a075dd2b7f1b3a097418780 | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_f3ff2c558a075dd2b7f1b3a097418780 | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr18:8608021..8608050, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_f3ff2c558a075dd2b7f1b3a097418780 | p@chr2:152590465..152590472, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Organism subdivision that has as its parts the jointed appendages used for locomotion and manipulation.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
