Personal tools

Coexpression cluster:C2190: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 9: Line 9:
|tfbs_overrepresentation=0.191353,0.0774498,0.0285313,0.0631091,0.257053,0.363996,0.0569281,0.0358499,0.043387,0.0341265,0.181435,0.288577,0.243414,0.0143109,0.00140391,0.0816702,0.183412,0.000393588,0.0698403,0.141416,0.000201399,0.172742,0.107781,0.124486,0.0550418,0.0423226,0.00405868,0.119094,0.186914,0.00783157,0.000285675,0.149094,0.0239693,0.267529,0.0877018,0.111013,7.74173e-07,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.0299044,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.000334266,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.00410045,0.00410253,0.116917,0.155921,0.00995563,0.0227583,0.0083674,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.000686125,0.00370653,0.268505,0.00917415,0.0827752,0.112676,0.0655645,0.12511,0.00200553,0.112199,0.150351,0.00704756,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.00122635,0.280878,0.0541957,0.00401907,0.423154,6.56494e-05,0.00894857,0.00265053,0.0010313,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0027388,0.000973931,0.0052702,0.0302521,0.166414,0.262198,0.0016282,0.0346699,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.00256648,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.0122552,0.192028,0.346873,0.149398,0.00143091,0.166112,0.0534404,0.392741,0.2321,0.017128,0.052046,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.000773546,0.0363736,0.15105,0.0970713,0.155237,0.0304129,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.00055164,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.346995,0.197158,0.265132,0.0288641,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,2.89426e-06,0.00439336,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.0302254,2.99606e-05,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.0311341,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,2.99669e-05,0.0034321,0.226367,0.0241753,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.00358623,0.00750878,0.00133086,0.00673033,0.0504034,0.169684,0.690367,0.810881,0.869559,0.73998,0.3024,0.672445,3.49486e-06,0.420045,0.73391,0.332539,0.545329,0.464128,0.389374,0.594055,0.414547,0.146105,0.100406,0.271656,0.0406667,0.34505,0.0785304,0.0334148,7.04389e-06,0.00680285,0.0348478,0.241524,0.45167,0.234628,0.00682042,0.143893,0.41477,0.00462477,0.00101906,0.467825,0.051755,0.164225,0.0806606,0.076794,0.460819,1.02935e-05,0.00216594,0.0073977,0.350886,0.380582,0.218919,0.0926754,0.286293,0.0683688,0.00862278,0.359128,0.395864,0.683133,0.368633,0.188516,0.317802,0.162437,0.0116693,0.0117353,0.537928,0.464342,0.00649908,0.714007,0.235444,0.225357,0.0297312,1.03633e-08,0.349116,0.0510948,0.239545,0.11111,0.640367,0.343881,0.0442147,0.606382,0.617741,0.626346,0.0069534,0.356561,0.0552678,0.211506,0.0883859,0.0962508,0.238465,0.70198,0.0456265,0.6873,0.508325,0.187096,0.0225709,0.656755,0.046332,0.280307,0.001754,0.469888,0.0596868,0.0984075,0.00537023,0.753513,5.21231e-07,5.31823e-05,0.0799295,0.429205,0.214741,0.0112154,0.41035,0.00493387,0.35234,0.072148,0.525923,0.291917,0.421082,0.25441,0.202782,0.00104809,0.166182,0.219758,0.165503,0.0171365,3.76837e-06,0.419676,0.188259,0.189182,0.138387,5.04189e-05,0.000173144,0.560187,0.321282,0.198207,0.0616078,0.178485,0.329745,0.175552,0.129238,0.651295,0.370995,0.360161,2.14254e-06,0.386216,0.0861729,0.126311,0.606408,0.259338,0.360203,0.333725,0.447838,0.289666,0.500627,0.513045,0.452694,0.203356,0.845507,0.265037,0.000575107,0.754776,0.53531,0.341771,0.424526,0.0236936,0.356381,0.184395,0.0489035,0.000535281,0.206945,0.304719,0.0252286,0.296994,0.244339,0.117049,0.0786167,0.629381,0.376317,0.00278013,0.64428,0.436806,0.576549,0.499072,0.158149,0.734628,0.00183829,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.187642,0.286156,0.261868,0.541583,1.66025e-06,0.247151,0.146385,0.365815,0.0576261,0.382413,0.164977,0.175633,0.139918,0.34669,0.0828344,0.00422161,0.0238089,0.383126,0.0719157,0.00468928,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.0340965,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.0157712,0.243319,0.0637178,0.00351594,7.26058e-07,0.166608,0.227224,0.238082,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.0104244,7.56512e-09,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.0237068,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.0074996,0.220368,0.258624,0.064656,0.226143,0.000447146,0.0438521,2.41003e-06,0.000382303,0.0522771,0.0787278,0.0372041,0.159873,0.142462,0.143935,0.000805741,0.0379537,0.00471564,0.0188872,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.144756,0.051371,0.363016,0.100188,0.0269772,0.107653,0.235857,0.103852,0.191914,0.184022,0.216557,0.182956,0.116818,0.0139335,0.36316,0.0625685,0.124464,0.00856472,0.173134,0.101893,0.142875,0.167635,0.171311,0.00111708,0.00885745,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.0705088,0.0360207,0.758305,0.278645,0.011228,0.155708,0.248017,0.22995,0.000117736,0.0760151,0.0629459,0.00483066,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.000140721,7.44804e-06,0.00388363,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.0158721,0.0595495,0.071232,0.149346,0.00776177,0.22302,0.137423,0.284016,0.0754883,0.0501465,0.100006,0.00120288,0.197817,0.251078,0.00462092,0.133127,0.410303,0.223717,0.426452,0.0207859,0.0826805,0.246601,0.0199582,6.41174e-06,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.00318161,0.178639,0.291976,0.0578865,0.0763252,0.15547,0.110256,0.101581,0.14794,0.0114255,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.06079,0.135777,0.147842,0.0339286,0.217363,0.119015,0.32805,0.00200865,0.243266,0.107021,0.238657,0.20272,0.392453,5.05797e-10,0.0780061,0.00683871,0.00246552,0.043419,0.295555,8.6732e-06,1.09347e-06,0.0478217,9.60665e-05,0.170854,0.0575231,0.174063,0.000106434,0.459091,0.54832,0.502211,0.296013,0.282366,0.537932,0.459994,0.523209,0.548059,0.25423,0.146971,0.45013,0.00559995,0.135135,0.111549,0.0510811,0.529642,0.00816509,0.14198,0.590496,0.0671621,0.00835925,0.627201,0.00784768,6.14083e-06,0.290703,7.1106e-05,0.722684,0.139104,0.360199,2.89075e-11,0.290133,0.253797,0.365494,0.212703,0.0515679,0.364079,0.00115832,0.215551,0.421038,0.569409,0.328518,0.545608,0.310552,0.00110665,0.483764,0.103928,0.0201581,0.209437,0.0404917,9.66019e-05,0.0141441,0.0221843,0.464001,0.00127982,0.579004,1.00678e-05,0.00283087,1.76282e-07,0.000276758,0.0365695,0.264245,0.379063,0.0602936,0.0069676,0.436016,0.475063,0.202522,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.35974,0.301684,0.0912179,0.234254,0.357409,0.00476468,0.00995016,0.50338,0.252827,0.404625,0.759068,0.424691,0.00931622,0.139684,0.077723,4.87946e-07,0.274432,0.284496,0.512545,0.512178,0.563206,0.00050099,0.00663196,0.263302,0.552023,0.180735,3.92131e-06,0.216102,0.254659,0.109605,0.0924199,0.0585759,0.226491,0.102502,0.0038466,0.0183052,0.0342559,0.0237654,0.0202528,0.142363,3.94701e-05,0.301581,0.0376831,0.00938391,0.466529,0.545655,0.438176,0.349112,0.00271006,0.385425,0.307816,0.461541,0.0866806,0.382854,0.598787,0.478745,0.611661,0.0576521,0.475047,0.00972177,0.608127,0.282281,0.245336,0.2536,0.246827,0.564333,0.12664,0.387134,0.559969,0.358813,2.76352e-07,0.210703,0.493455,0.346636,0.457747,0.348802,0.476541,0.215342,0.119749,0.42505,0.254628,0.355111,0.479347,0.416962,0.632833,0.378333,0.387805,0.264038,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.336551,0.210656,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.321224,0.0265924,0.325254,0.266651,0.546295,0.231754,0.249415,0.283107,0.285648,0.000282736,0.391071,0.279553,0.25563,0.00284468,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.0713545,0.112422,0.170886,0.267687,0.315656,2.67327e-05,0.0887542,0.267811,0.338547,0.147872,0.189388,0.0480552,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.113839,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.330223,0.0136966,0.233244,0.207281,0.327401,0.195748,0.27845,0.0138433,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.00433276,0.0392261,0.184534,0.248707,0.31749,0.15156,0.287598,0.313858,0.0271466,0.25788,0.181895,0.253768,0.0528669,0.202977,0.170837,0.00771419,0.28543,0.222656,0.228479,0.127111,0.259989,0.390754,0.355805,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.111581,0.184359,0.334474,0.325785,0.257476,0.291176,0.081972,0.00739196,0.229571,0.359036,0.0641033,0.171704,0.208256,0.0387226,0.0361085,0.00120337,0.302133,0.40806,0.151361,0.000371318,0.286696,0.150674,0.00325002,0.0331484,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.410951,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.343425,0.132374,0.285122,0.22741,0.203996,0.276721,0.321965,0.0386145,0.450113
|tfbs_overrepresentation=0.191353,0.0774498,0.0285313,0.0631091,0.257053,0.363996,0.0569281,0.0358499,0.043387,0.0341265,0.181435,0.288577,0.243414,0.0143109,0.00140391,0.0816702,0.183412,0.000393588,0.0698403,0.141416,0.000201399,0.172742,0.107781,0.124486,0.0550418,0.0423226,0.00405868,0.119094,0.186914,0.00783157,0.000285675,0.149094,0.0239693,0.267529,0.0877018,0.111013,7.74173e-07,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.0299044,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.000334266,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.00410045,0.00410253,0.116917,0.155921,0.00995563,0.0227583,0.0083674,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.000686125,0.00370653,0.268505,0.00917415,0.0827752,0.112676,0.0655645,0.12511,0.00200553,0.112199,0.150351,0.00704756,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.00122635,0.280878,0.0541957,0.00401907,0.423154,6.56494e-05,0.00894857,0.00265053,0.0010313,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0027388,0.000973931,0.0052702,0.0302521,0.166414,0.262198,0.0016282,0.0346699,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.00256648,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.0122552,0.192028,0.346873,0.149398,0.00143091,0.166112,0.0534404,0.392741,0.2321,0.017128,0.052046,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.000773546,0.0363736,0.15105,0.0970713,0.155237,0.0304129,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.00055164,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.346995,0.197158,0.265132,0.0288641,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,2.89426e-06,0.00439336,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.0302254,2.99606e-05,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.0311341,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,2.99669e-05,0.0034321,0.226367,0.0241753,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.00358623,0.00750878,0.00133086,0.00673033,0.0504034,0.169684,0.690367,0.810881,0.869559,0.73998,0.3024,0.672445,3.49486e-06,0.420045,0.73391,0.332539,0.545329,0.464128,0.389374,0.594055,0.414547,0.146105,0.100406,0.271656,0.0406667,0.34505,0.0785304,0.0334148,7.04389e-06,0.00680285,0.0348478,0.241524,0.45167,0.234628,0.00682042,0.143893,0.41477,0.00462477,0.00101906,0.467825,0.051755,0.164225,0.0806606,0.076794,0.460819,1.02935e-05,0.00216594,0.0073977,0.350886,0.380582,0.218919,0.0926754,0.286293,0.0683688,0.00862278,0.359128,0.395864,0.683133,0.368633,0.188516,0.317802,0.162437,0.0116693,0.0117353,0.537928,0.464342,0.00649908,0.714007,0.235444,0.225357,0.0297312,1.03633e-08,0.349116,0.0510948,0.239545,0.11111,0.640367,0.343881,0.0442147,0.606382,0.617741,0.626346,0.0069534,0.356561,0.0552678,0.211506,0.0883859,0.0962508,0.238465,0.70198,0.0456265,0.6873,0.508325,0.187096,0.0225709,0.656755,0.046332,0.280307,0.001754,0.469888,0.0596868,0.0984075,0.00537023,0.753513,5.21231e-07,5.31823e-05,0.0799295,0.429205,0.214741,0.0112154,0.41035,0.00493387,0.35234,0.072148,0.525923,0.291917,0.421082,0.25441,0.202782,0.00104809,0.166182,0.219758,0.165503,0.0171365,3.76837e-06,0.419676,0.188259,0.189182,0.138387,5.04189e-05,0.000173144,0.560187,0.321282,0.198207,0.0616078,0.178485,0.329745,0.175552,0.129238,0.651295,0.370995,0.360161,2.14254e-06,0.386216,0.0861729,0.126311,0.606408,0.259338,0.360203,0.333725,0.447838,0.289666,0.500627,0.513045,0.452694,0.203356,0.845507,0.265037,0.000575107,0.754776,0.53531,0.341771,0.424526,0.0236936,0.356381,0.184395,0.0489035,0.000535281,0.206945,0.304719,0.0252286,0.296994,0.244339,0.117049,0.0786167,0.629381,0.376317,0.00278013,0.64428,0.436806,0.576549,0.499072,0.158149,0.734628,0.00183829,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.187642,0.286156,0.261868,0.541583,1.66025e-06,0.247151,0.146385,0.365815,0.0576261,0.382413,0.164977,0.175633,0.139918,0.34669,0.0828344,0.00422161,0.0238089,0.383126,0.0719157,0.00468928,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.0340965,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.0157712,0.243319,0.0637178,0.00351594,7.26058e-07,0.166608,0.227224,0.238082,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.0104244,7.56512e-09,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.0237068,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.0074996,0.220368,0.258624,0.064656,0.226143,0.000447146,0.0438521,2.41003e-06,0.000382303,0.0522771,0.0787278,0.0372041,0.159873,0.142462,0.143935,0.000805741,0.0379537,0.00471564,0.0188872,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.144756,0.051371,0.363016,0.100188,0.0269772,0.107653,0.235857,0.103852,0.191914,0.184022,0.216557,0.182956,0.116818,0.0139335,0.36316,0.0625685,0.124464,0.00856472,0.173134,0.101893,0.142875,0.167635,0.171311,0.00111708,0.00885745,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.0705088,0.0360207,0.758305,0.278645,0.011228,0.155708,0.248017,0.22995,0.000117736,0.0760151,0.0629459,0.00483066,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.000140721,7.44804e-06,0.00388363,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.0158721,0.0595495,0.071232,0.149346,0.00776177,0.22302,0.137423,0.284016,0.0754883,0.0501465,0.100006,0.00120288,0.197817,0.251078,0.00462092,0.133127,0.410303,0.223717,0.426452,0.0207859,0.0826805,0.246601,0.0199582,6.41174e-06,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.220353,0.00318161,0.178639,0.291976,0.0578865,0.0763252,0.15547,0.110256,0.101581,0.14794,0.0114255,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.06079,0.135777,0.147842,0.0339286,0.217363,0.119015,0.32805,0.00200865,0.243266,0.107021,0.238657,0.20272,0.392453,5.05797e-10,0.0780061,0.00683871,0.00246552,0.043419,0.295555,8.6732e-06,1.09347e-06,0.0478217,9.60665e-05,0.170854,0.0575231,0.174063,0.000106434,0.459091,0.54832,0.502211,0.296013,0.282366,0.537932,0.459994,0.523209,0.548059,0.25423,0.146971,0.45013,0.00559995,0.135135,0.111549,0.0510811,0.529642,0.00816509,0.14198,0.590496,0.0671621,0.00835925,0.627201,0.00784768,6.14083e-06,0.290703,7.1106e-05,0.722684,0.139104,0.360199,2.89075e-11,0.290133,0.253797,0.365494,0.212703,0.0515679,0.364079,0.00115832,0.215551,0.421038,0.569409,0.328518,0.545608,0.310552,0.00110665,0.483764,0.103928,0.0201581,0.209437,0.0404917,9.66019e-05,0.0141441,0.0221843,0.464001,0.00127982,0.579004,1.00678e-05,0.00283087,1.76282e-07,0.000276758,0.0365695,0.264245,0.379063,0.0602936,0.0069676,0.436016,0.475063,0.202522,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.35974,0.301684,0.0912179,0.234254,0.357409,0.00476468,0.00995016,0.50338,0.252827,0.404625,0.759068,0.424691,0.00931622,0.139684,0.077723,4.87946e-07,0.274432,0.284496,0.512545,0.512178,0.563206,0.00050099,0.00663196,0.263302,0.552023,0.180735,3.92131e-06,0.216102,0.254659,0.109605,0.0924199,0.0585759,0.226491,0.102502,0.0038466,0.0183052,0.0342559,0.0237654,0.0202528,0.142363,3.94701e-05,0.301581,0.0376831,0.00938391,0.466529,0.545655,0.438176,0.349112,0.00271006,0.385425,0.307816,0.461541,0.0866806,0.382854,0.598787,0.478745,0.611661,0.0576521,0.475047,0.00972177,0.608127,0.282281,0.245336,0.2536,0.246827,0.564333,0.12664,0.387134,0.559969,0.358813,2.76352e-07,0.210703,0.493455,0.346636,0.457747,0.348802,0.476541,0.215342,0.119749,0.42505,0.254628,0.355111,0.479347,0.416962,0.632833,0.378333,0.387805,0.264038,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.329284,0.242783,0.0947248,0.336551,0.210656,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.321224,0.0265924,0.325254,0.266651,0.546295,0.231754,0.249415,0.283107,0.285648,0.000282736,0.391071,0.279553,0.25563,0.00284468,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.0713545,0.112422,0.170886,0.267687,0.315656,2.67327e-05,0.0887542,0.267811,0.338547,0.147872,0.189388,0.0480552,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.113839,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.330223,0.0136966,0.233244,0.207281,0.327401,0.195748,0.27845,0.0138433,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.00433276,0.0392261,0.184534,0.248707,0.31749,0.15156,0.287598,0.313858,0.0271466,0.25788,0.181895,0.253768,0.0528669,0.202977,0.170837,0.00771419,0.28543,0.222656,0.228479,0.127111,0.259989,0.390754,0.355805,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.111581,0.184359,0.334474,0.325785,0.257476,0.291176,0.081972,0.00739196,0.229571,0.359036,0.0641033,0.171704,0.208256,0.0387226,0.0361085,0.00120337,0.302133,0.40806,0.151361,0.000371318,0.286696,0.150674,0.00325002,0.0331484,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.410951,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.343425,0.132374,0.285122,0.22741,0.203996,0.276721,0.321965,0.0386145,0.450113
|tfbs_overrepresentation_for_novel_motifs=0.590005,1.54039,0.581696,0.741427,0.534346,0.739643,0.821651,1.81026,0.392841,2.78539,0.706765,0.867962,0.905351,0.809319,0.532789,0.559384,1.05593,0.471262,0.356737,0.635753,0.581762,0.169357,0.731221,0.528529,0.632849,0.892087,0.849366,0.728867,0.537869,1.46495,0.682839,1.09415,1.10579,0.344471,0.49475,0.285913,0.491074,0.740899,0.463978,0.371755,0.493145,0.66492,0.183156,0.53106,1.08066,0.61613,0.822818,0.694903,0.173425,0.538016,0.90714,0.83543,0.699149,1.17354,1.33024,0.812467,0.54284,0.777235,1.46445,0.776148,1.13655,0.825354,0.393426,1.02706,0.844545,0.991076,1.42026,1.79268,1.08337,1.62905,0.650393,0.402607,0.248021,1.32819,0.336329,0.321165,0.823598,1.00941,1.08,0.62601,0.362435,1.02594,0.844168,0.399165,1.27559,0.716653,0.221873,0.291738,0.934646,1.89266,1.51507,1.24792,1.11156,0.441618,0.535192,0.456994,0.934671,1.15558,0.939507,0.749003,0.465545,1.1057,1.14983,1.05974,0.979006,0.701817,1.04326,0.805616,0.632569,0.516141,0.594299,1.14697,0.575476,0.717043,1.46636,0.489254,7.52185,0.681522,0.988625,0.444962,1.31973,0.932085,0.736652,0.856196,1.57854,1.0102,0.814847,1.11673,1.36323,0.458105,1.24863,0.68598,1.37788,0.852645,1.52813,0.774456,0.676268,0.729481,1.48509,2.34913,1.94535,1.44718,0.8167,1.15194,0.980848,0.768101,0.963351,2.1895,0.661255,0.437774,0.66252,0.175846,1.24902,0.997363,0.824835,1.65997,0.917558,0.518428,0.632914,2.49031,1.44595,1.23002,1.07918,0.604379,0.997702,0.843324,0.423521,0.820225,0.156682
|tfbs_overrepresentation_for_novel_motifs=0.590005,1.54039,0.581696,0.741427,0.534346,0.739643,0.821651,1.81026,0.392841,2.78539,0.706765,0.867962,0.905351,0.809319,0.532789,0.559384,1.05593,0.471262,0.356737,0.635753,0.581762,0.169357,0.731221,0.528529,0.632849,0.892087,0.849366,0.728867,0.537869,1.46495,0.682839,1.09415,1.10579,0.344471,0.49475,0.285913,0.491074,0.740899,0.463978,0.371755,0.493145,0.66492,0.183156,0.53106,1.08066,0.61613,0.822818,0.694903,0.173425,0.538016,0.90714,0.83543,0.699149,1.17354,1.33024,0.812467,0.54284,0.777235,1.46445,0.776148,1.13655,0.825354,0.393426,1.02706,0.844545,0.991076,1.42026,1.79268,1.08337,1.62905,0.650393,0.402607,0.248021,1.32819,0.336329,0.321165,0.823598,1.00941,1.08,0.62601,0.362435,1.02594,0.844168,0.399165,1.27559,0.716653,0.221873,0.291738,0.934646,1.89266,1.51507,1.24792,1.11156,0.441618,0.535192,0.456994,0.934671,1.15558,0.939507,0.749003,0.465545,1.1057,1.14983,1.05974,0.979006,0.701817,1.04326,0.805616,0.632569,0.516141,0.594299,1.14697,0.575476,0.717043,1.46636,0.489254,7.52185,0.681522,0.988625,0.444962,1.31973,0.932085,0.736652,0.856196,1.57854,1.0102,0.814847,1.11673,1.36323,0.458105,1.24863,0.68598,1.37788,0.852645,1.52813,0.774456,0.676268,0.729481,1.48509,2.34913,1.94535,1.44718,0.8167,1.15194,0.980848,0.768101,0.963351,2.1895,0.661255,0.437774,0.66252,0.175846,1.24902,0.997363,0.824835,1.65997,0.917558,0.518428,0.632914,2.49031,1.44595,1.23002,1.07918,0.604379,0.997702,0.843324,0.423521,0.820225,0.156682
|tfbs_overrepresentation_jaspar=MA0003.1;7.59831,MA0004.1;0.71247,MA0006.1;0.532262,MA0007.1;0.6918,MA0009.1;1.20602,MA0014.1;0.896009,MA0017.1;0.577281,MA0019.1;2.02743,MA0024.1;1.09684,MA0025.1;1.34373,MA0027.1;2.83281,MA0028.1;1.35734,MA0029.1;1.11704,MA0030.1;1.10506,MA0031.1;1.03735,MA0038.1;0.824639,MA0040.1;1.12314,MA0041.1;0.732902,MA0042.1;0.697662,MA0043.1;1.20635,MA0046.1;1.19471,MA0048.1;0.25531,MA0050.1;0.69864,MA0051.1;0.820063,MA0052.1;1.12718,MA0055.1;0.125954,MA0056.1;0,MA0057.1;0.248209,MA0058.1;0.605914,MA0059.1;0.604454,MA0060.1;0.393285,MA0061.1;1.68681,MA0063.1;0,MA0066.1;0.825101,MA0067.1;1.53181,MA0068.1;0.313194,MA0069.1;1.19071,MA0070.1;1.17908,MA0071.1;0.782546,MA0072.1;1.1744,MA0073.1;0.00636811,MA0074.1;0.819248,MA0076.1;1.51122,MA0077.1;1.16637,MA0078.1;0.926725,MA0081.1;0.604638,MA0083.1;1.21381,MA0084.1;1.72172,MA0087.1;1.17185,MA0088.1;0.536981,MA0089.1;0,MA0090.1;0.640115,MA0091.1;0.715356,MA0092.1;0.673508,MA0093.1;0.535768,MA0095.1;0,MA0098.1;0,MA0100.1;0.83965,MA0101.1;0.539569,MA0103.1;0.521546,MA0105.1;3.51257,MA0106.1;0.869173,MA0107.1;0.453492,MA0108.2;1.03412,MA0109.1;0,MA0111.1;0.655276,MA0113.1;0.886811,MA0114.1;1.98562,MA0115.1;1.45393,MA0116.1;4.07269,MA0117.1;1.24497,MA0119.1;1.43218,MA0122.1;1.27173,MA0124.1;1.41151,MA0125.1;1.32534,MA0130.1;0,MA0131.1;0.94608,MA0132.1;0,MA0133.1;0,MA0135.1;1.23748,MA0136.1;0.832277,MA0139.1;2.47057,MA0140.1;0.779643,MA0141.1;0.602484,MA0142.1;1.00381,MA0143.1;0.887001,MA0144.1;0.430413,MA0145.1;0.569905,MA0146.1;1.25938,MA0147.1;0.46175,MA0148.1;0.739888,MA0149.1;1.813,MA0062.2;3.45291,MA0035.2;0.778873,MA0039.2;4.95563,MA0138.2;0.928035,MA0002.2;0.379056,MA0137.2;0.558189,MA0104.2;0.392359,MA0047.2;0.856092,MA0112.2;0.187982,MA0065.2;1.09513,MA0150.1;0.633493,MA0151.1;0,MA0152.1;0.78681,MA0153.1;1.30799,MA0154.1;6.35649,MA0155.1;2.30186,MA0156.1;0.560797,MA0157.1;0.97481,MA0158.1;0,MA0159.1;0.462502,MA0160.1;0.756582,MA0161.1;0,MA0162.1;0.640035,MA0163.1;2.49771,MA0164.1;0.90014,MA0080.2;0.535868,MA0018.2;0.870662,MA0099.2;0.7872,MA0079.2;5.92758,MA0102.2;1.75932,MA0258.1;0.418966,MA0259.1;0.471671,MA0442.1;0
}}
}}

Revision as of 20:29, 22 January 2013


Full id: C2190_rhabdomyosarcoma_occipital_postcentral_brain_paracentral_temporal_parietal



Phase1 CAGE Peaks

Hg19::chr12:121078397..121078417,+p3@CABP1
Hg19::chr12:121078423..121078446,+p2@CABP1
Hg19::chr12:121078535..121078550,+p1@CABP1
Hg19::chr12:121099132..121099146,+p@chr12:121099132..121099146
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
embryonic stem cell1.78e-095
neuron3.71e-086
neuroblast3.71e-086
electrically signaling cell3.71e-086
Uber Anatomy
Ontology termp-valuen
central nervous system1.39e-7481
neural tube3.29e-7456
neural rod3.29e-7456
future spinal cord3.29e-7456
neural keel3.29e-7456
regional part of nervous system7.79e-6953
regional part of brain7.79e-6953
nervous system1.45e-6589
brain8.06e-6168
future brain8.06e-6168
regional part of forebrain5.49e-6041
forebrain5.49e-6041
anterior neural tube5.49e-6041
future forebrain5.49e-6041
telencephalon4.31e-5434
brain grey matter6.40e-5434
gray matter6.40e-5434
cerebral hemisphere8.89e-5132
regional part of telencephalon2.89e-5032
neural plate1.42e-4882
presumptive neural plate1.42e-4882
neurectoderm1.19e-4586
regional part of cerebral cortex1.45e-4322
neocortex1.19e-3920
pre-chordal neural plate3.59e-3961
adult organism4.93e-38114
cerebral cortex1.07e-3725
pallium1.07e-3725
ecto-epithelium2.75e-35104
ectoderm-derived structure4.71e-29171
ectoderm4.71e-29171
presumptive ectoderm4.71e-29171
structure with developmental contribution from neural crest5.93e-29132
organ system subdivision4.30e-22223
basal ganglion7.35e-189
nuclear complex of neuraxis7.35e-189
aggregate regional part of brain7.35e-189
collection of basal ganglia7.35e-189
cerebral subcortex7.35e-189
neural nucleus1.62e-179
nucleus of brain1.62e-179
posterior neural tube4.62e-1515
chordal neural plate4.62e-1515
gyrus4.75e-146
telencephalic nucleus5.51e-147
tube1.38e-13192
occipital lobe8.82e-125
parietal lobe1.14e-115
anatomical cluster1.68e-11373
temporal lobe1.71e-116
limbic system2.17e-115
segmental subdivision of hindbrain1.98e-1012
hindbrain1.98e-1012
presumptive hindbrain1.98e-1012
anatomical conduit1.59e-09240
segmental subdivision of nervous system1.67e-0913
corpus striatum4.01e-094
striatum4.01e-094
ventral part of telencephalon4.01e-094
future corpus striatum4.01e-094
brainstem7.18e-096
regional part of metencephalon2.91e-089
metencephalon2.91e-089
future metencephalon2.91e-089
frontal cortex8.38e-083
diencephalon1.42e-077
future diencephalon1.42e-077
organ part3.15e-07218
caudate-putamen3.93e-073
dorsal striatum3.93e-073
pons4.36e-073
spinal cord9.68e-073
dorsal region element9.68e-073
dorsum9.68e-073


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.17.59831
MA0004.10.71247
MA0006.10.532262
MA0007.10.6918
MA0009.11.20602
MA0014.10.896009
MA0017.10.577281
MA0019.12.02743
MA0024.11.09684
MA0025.11.34373
MA0027.12.83281
MA0028.11.35734
MA0029.11.11704
MA0030.11.10506
MA0031.11.03735
MA0038.10.824639
MA0040.11.12314
MA0041.10.732902
MA0042.10.697662
MA0043.11.20635
MA0046.11.19471
MA0048.10.25531
MA0050.10.69864
MA0051.10.820063
MA0052.11.12718
MA0055.10.125954
MA0056.10
MA0057.10.248209
MA0058.10.605914
MA0059.10.604454
MA0060.10.393285
MA0061.11.68681
MA0063.10
MA0066.10.825101
MA0067.11.53181
MA0068.10.313194
MA0069.11.19071
MA0070.11.17908
MA0071.10.782546
MA0072.11.1744
MA0073.10.00636811
MA0074.10.819248
MA0076.11.51122
MA0077.11.16637
MA0078.10.926725
MA0081.10.604638
MA0083.11.21381
MA0084.11.72172
MA0087.11.17185
MA0088.10.536981
MA0089.10
MA0090.10.640115
MA0091.10.715356
MA0092.10.673508
MA0093.10.535768
MA0095.10
MA0098.10
MA0100.10.83965
MA0101.10.539569
MA0103.10.521546
MA0105.13.51257
MA0106.10.869173
MA0107.10.453492
MA0108.21.03412
MA0109.10
MA0111.10.655276
MA0113.10.886811
MA0114.11.98562
MA0115.11.45393
MA0116.14.07269
MA0117.11.24497
MA0119.11.43218
MA0122.11.27173
MA0124.11.41151
MA0125.11.32534
MA0130.10
MA0131.10.94608
MA0132.10
MA0133.10
MA0135.11.23748
MA0136.10.832277
MA0139.12.47057
MA0140.10.779643
MA0141.10.602484
MA0142.11.00381
MA0143.10.887001
MA0144.10.430413
MA0145.10.569905
MA0146.11.25938
MA0147.10.46175
MA0148.10.739888
MA0149.11.813
MA0062.23.45291
MA0035.20.778873
MA0039.24.95563
MA0138.20.928035
MA0002.20.379056
MA0137.20.558189
MA0104.20.392359
MA0047.20.856092
MA0112.20.187982
MA0065.21.09513
MA0150.10.633493
MA0151.10
MA0152.10.78681
MA0153.11.30799
MA0154.16.35649
MA0155.12.30186
MA0156.10.560797
MA0157.10.97481
MA0158.10
MA0159.10.462502
MA0160.10.756582
MA0161.10
MA0162.10.640035
MA0163.12.49771
MA0164.10.90014
MA0080.20.535868
MA0018.20.870662
MA0099.20.7872
MA0079.25.92758
MA0102.21.75932
MA0258.10.418966
MA0259.10.471671
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CTCFL#140690314.80985576923080.0004996291767563340.00440790434121091
GABPB1#255335.300762877136630.01012678824234270.0378428380292698
NANOG#79923321.93358386075950.0001557535816382770.00196458312955556
ZBTB7A#5134135.513931980906920.009038352821081090.0342286072333341



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C2190&oldid=2570701"