FFCP PHASE1:Mm9::chr17:86020510..86020589,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20473|HGNC=|MCL_coexpression_id=578|UniProt=Q52KB8|association_with_transcript=139bp_to_ENSMUST00000043819,ENSMUST00000162695_5end|description=CAGE_peak_3_at_Six3_5end|id=chr17:86020510..86020589,+|ontology_enrichment_celltype=CL:0000117!9.88e-10!23;CL:0000337!9.88e-10!23;CL:0002319!3.55e-09!43;CL:0000221!8.43e-09!44;CL:0000133!8.43e-09!44;CL:0000055!6.73e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,2.26e-09,23;CL:0000337,2.26e-09,23;CL:0002319,2.83e-09,43;CL:0000221,5.88e-09,44;CL:0000133,5.88e-09,44;CL:0002453,5.47e-07,8;CL:0000128,6.30e-07,6;CL:0000126,6.30e-07,6;CL:0000127,6.30e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!6.27e-25!49;UBERON:0000033!1.19e-22!63;UBERON:0002616!1.01e-16!49;UBERON:0000955!3.63e-16!50;UBERON:0006238!3.63e-16!50;UBERON:0003080!1.25e-15!40;UBERON:0004121!2.86e-15!102;UBERON:0000924!2.86e-15!102;UBERON:0006601!2.86e-15!102;UBERON:0002346!4.30e-15!71;UBERON:0003075!4.30e-15!71;UBERON:0007284!4.30e-15!71;UBERON:0001017!7.13e-15!73;UBERON:0005743!7.13e-15!73;UBERON:0002780!8.29e-15!39;UBERON:0001890!8.29e-15!39;UBERON:0006240!8.29e-15!39;UBERON:0000073!3.96e-14!75;UBERON:0001016!3.96e-14!75;UBERON:0007811!7.84e-13!86;UBERON:0001894!3.48e-12!10;UBERON:0006222!3.48e-12!10;UBERON:0001049!9.73e-12!52;UBERON:0005068!9.73e-12!52;UBERON:0006241!9.73e-12!52;UBERON:0007135!9.73e-12!52;UBERON:0000970!1.79e-11!9;UBERON:0000019!1.79e-11!9;UBERON:0000047!1.79e-11!9;UBERON:0004088!1.79e-11!9;UBERON:0002104!1.79e-11!9;UBERON:0001456!1.79e-11!9;UBERON:0003072!1.79e-11!9;UBERON:0003071!1.79e-11!9;UBERON:0004128!1.79e-11!9;UBERON:0000153!1.27e-10!94;UBERON:0000007!1.77e-10!8;UBERON:0003296!1.77e-10!8;UBERON:0010133!1.77e-10!8;UBERON:0001444!7.39e-09!11;UBERON:0002420!4.71e-08!8;UBERON:0007245!4.71e-08!8;UBERON:0010009!4.71e-08!8;UBERON:0010011!4.71e-08!8;UBERON:0000454!4.71e-08!8;UBERON:0000020!6.94e-08!12;UBERON:0001032!6.94e-08!12;UBERON:0004456!6.94e-08!12;UBERON:0005085!4.56e-07!13|ontology_enrichment_uberon_v019_2=UBERON:0003056,3.88e-29,49;UBERON:0004121,3.12e-22,95;UBERON:0000924,3.12e-22,95;UBERON:0006601,3.12e-22,95;UBERON:0002346,8.16e-22,64;UBERON:0003075,8.16e-22,64;UBERON:0007284,8.16e-22,64;UBERON:0010371,5.22e-18,73;UBERON:0001894,1.64e-17,10;UBERON:0006222,1.64e-17,10;UBERON:0000970,1.92e-16,9;UBERON:0000019,1.92e-16,9;UBERON:0000047,1.92e-16,9;UBERON:0010312,1.92e-16,9;UBERON:0004088,1.92e-16,9;UBERON:0002104,1.92e-16,9;UBERON:0001456,1.92e-16,9;UBERON:0003072,1.92e-16,9;UBERON:0004128,1.92e-16,9;UBERON:0003071,1.92e-16,9;UBERON:0001017,1.92e-16,73;UBERON:0003080,1.96e-16,40;UBERON:0001016,8.98e-16,75;UBERON:0000073,1.51e-15,54;UBERON:0002780,2.45e-15,39;UBERON:0001890,2.45e-15,39;UBERON:0006240,2.45e-15,39;UBERON:0002616,5.75e-15,46;UBERON:0000007,6.02e-15,8;UBERON:0003296,6.02e-15,8;UBERON:0010133,6.02e-15,8;UBERON:0000955,1.64e-14,47;UBERON:0006238,1.64e-14,47;UBERON:0001444,4.80e-13,11;UBERON:0001049,1.68e-12,52;UBERON:0005068,1.68e-12,52;UBERON:0006241,1.68e-12,52;UBERON:0007135,1.68e-12,52;UBERON:0010314,1.84e-12,92;UBERON:0000020,8.97e-12,12;UBERON:0001032,8.97e-12,12;UBERON:0004456,8.97e-12,12;UBERON:0000033,1.06e-10,13;UBERON:0005085,1.06e-10,13;UBERON:0000369,1.22e-08,5;UBERON:0002435,1.22e-08,5;UBERON:0000204,1.22e-08,5;UBERON:0010082,1.22e-08,5;UBERON:0002420,4.67e-07,8;UBERON:0007245,4.67e-07,8;UBERON:0010009,4.67e-07,8;UBERON:0010011,4.67e-07,8;UBERON:0000454,4.67e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.50298109883741,10.1055644057857,14.1933826324227,5.17949760013841,4.31257693094915,0,0,0,0,0,0,5.46254444320914,9.52183762689659,4.43681982454325,0.338844532069132,0,0,0,0,0.898800331555214,2.68952813725088,0.518448061542388,0.270011876663381,0,0,0,14.3314235081496,24.5364405806685,14.7075005857603,2.20231761998777,2.17068474744819,1.68967186581868,13.0567424852892,11.7104183811084,9.37644067002168,0.837548997004143,1.68828783009504,0.916789486660861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11981512450592,0,0,5.24267237916879,2.74500361691176,15.9581027183338,0.521472960576829,0.511430914660661,5.61027720310812,3.40706652442291,0,0,0,6.52369753248069,30.7084245391981,17.012755728077,29.1700650284666,27.4282768461001,35.5150525569931,32.7971123929215,26.8923949486422,20.4375662883822,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411618449517138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,10.2131881726136,31.1505692674167,54.3306471887569,40.0810255509078,26.0690143454142,25.6851097346982,19.9104314928566,28.6197052167723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80225838477277,1.59609949360412,0.512200817262403,1.70174701947806,1.04806581313991,1.10306105070008,0.888986911206461,0.824140228955577,0.320919209591815,1.76888048234658,1.01391719956096,0.943131706930381,1.21733959710847,1.79270426733634,0.976402972245426,0.952587382566147,0.463537303779422,1.73618298417335,0.824171801606613,0.441596760403192,0.685738504770831,0.532427418478012,0.953744759789284,1.59881058295561,1.31753132581463,0.676916863133412,0.73171189149109,1.05227884575137,0.543216455383447,0.561142271657738,0.593175090620871,1.18205378850676,0.818462086339379,0.929621047115796,0,4.49659040288303,0.701794825336225,0.429742108096597,0,0,0|short_description=p3@Six3}} | ||
|EntrezGene=20473 | |||
|HGNC= | |||
|MCL_coexpression_id=578 | |||
|UniProt=Q52KB8 | |||
|association_with_transcript=139bp_to_ENSMUST00000043819,ENSMUST00000162695_5end | |||
|description=CAGE_peak_3_at_Six3_5end | |||
|id=chr17:86020510..86020589,+ | |||
|ontology_enrichment_celltype=CL:0000117!9.88e-10!23;CL:0000337!9.88e-10!23;CL:0002319!3.55e-09!43;CL:0000221!8.43e-09!44;CL:0000133!8.43e-09!44;CL:0000055!6.73e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.26e-09,23;CL:0000337,2.26e-09,23;CL:0002319,2.83e-09,43;CL:0000221,5.88e-09,44;CL:0000133,5.88e-09,44;CL:0002453,5.47e-07,8;CL:0000128,6.30e-07,6;CL:0000126,6.30e-07,6;CL:0000127,6.30e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!6.27e-25!49;UBERON:0000033!1.19e-22!63;UBERON:0002616!1.01e-16!49;UBERON:0000955!3.63e-16!50;UBERON:0006238!3.63e-16!50;UBERON:0003080!1.25e-15!40;UBERON:0004121!2.86e-15!102;UBERON:0000924!2.86e-15!102;UBERON:0006601!2.86e-15!102;UBERON:0002346!4.30e-15!71;UBERON:0003075!4.30e-15!71;UBERON:0007284!4.30e-15!71;UBERON:0001017!7.13e-15!73;UBERON:0005743!7.13e-15!73;UBERON:0002780!8.29e-15!39;UBERON:0001890!8.29e-15!39;UBERON:0006240!8.29e-15!39;UBERON:0000073!3.96e-14!75;UBERON:0001016!3.96e-14!75;UBERON:0007811!7.84e-13!86;UBERON:0001894!3.48e-12!10;UBERON:0006222!3.48e-12!10;UBERON:0001049!9.73e-12!52;UBERON:0005068!9.73e-12!52;UBERON:0006241!9.73e-12!52;UBERON:0007135!9.73e-12!52;UBERON:0000970!1.79e-11!9;UBERON:0000019!1.79e-11!9;UBERON:0000047!1.79e-11!9;UBERON:0004088!1.79e-11!9;UBERON:0002104!1.79e-11!9;UBERON:0001456!1.79e-11!9;UBERON:0003072!1.79e-11!9;UBERON:0003071!1.79e-11!9;UBERON:0004128!1.79e-11!9;UBERON:0000153!1.27e-10!94;UBERON:0000007!1.77e-10!8;UBERON:0003296!1.77e-10!8;UBERON:0010133!1.77e-10!8;UBERON:0001444!7.39e-09!11;UBERON:0002420!4.71e-08!8;UBERON:0007245!4.71e-08!8;UBERON:0010009!4.71e-08!8;UBERON:0010011!4.71e-08!8;UBERON:0000454!4.71e-08!8;UBERON:0000020!6.94e-08!12;UBERON:0001032!6.94e-08!12;UBERON:0004456!6.94e-08!12;UBERON:0005085!4.56e-07!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,3.88e-29,49;UBERON:0004121,3.12e-22,95;UBERON:0000924,3.12e-22,95;UBERON:0006601,3.12e-22,95;UBERON:0002346,8.16e-22,64;UBERON:0003075,8.16e-22,64;UBERON:0007284,8.16e-22,64;UBERON:0010371,5.22e-18,73;UBERON:0001894,1.64e-17,10;UBERON:0006222,1.64e-17,10;UBERON:0000970,1.92e-16,9;UBERON:0000019,1.92e-16,9;UBERON:0000047,1.92e-16,9;UBERON:0010312,1.92e-16,9;UBERON:0004088,1.92e-16,9;UBERON:0002104,1.92e-16,9;UBERON:0001456,1.92e-16,9;UBERON:0003072,1.92e-16,9;UBERON:0004128,1.92e-16,9;UBERON:0003071,1.92e-16,9;UBERON:0001017,1.92e-16,73;UBERON:0003080,1.96e-16,40;UBERON:0001016,8.98e-16,75;UBERON:0000073,1.51e-15,54;UBERON:0002780,2.45e-15,39;UBERON:0001890,2.45e-15,39;UBERON:0006240,2.45e-15,39;UBERON:0002616,5.75e-15,46;UBERON:0000007,6.02e-15,8;UBERON:0003296,6.02e-15,8;UBERON:0010133,6.02e-15,8;UBERON:0000955,1.64e-14,47;UBERON:0006238,1.64e-14,47;UBERON:0001444,4.80e-13,11;UBERON:0001049,1.68e-12,52;UBERON:0005068,1.68e-12,52;UBERON:0006241,1.68e-12,52;UBERON:0007135,1.68e-12,52;UBERON:0010314,1.84e-12,92;UBERON:0000020,8.97e-12,12;UBERON:0001032,8.97e-12,12;UBERON:0004456,8.97e-12,12;UBERON:0000033,1.06e-10,13;UBERON:0005085,1.06e-10,13;UBERON:0000369,1.22e-08,5;UBERON:0002435,1.22e-08,5;UBERON:0000204,1.22e-08,5;UBERON:0010082,1.22e-08,5;UBERON:0002420,4.67e-07,8;UBERON:0007245,4.67e-07,8;UBERON:0010009,4.67e-07,8;UBERON:0010011,4.67e-07,8;UBERON:0000454,4.67e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.50298109883741,10.1055644057857,14.1933826324227,5.17949760013841,4.31257693094915,0,0,0,0,0,0,5.46254444320914,9.52183762689659,4.43681982454325,0.338844532069132,0,0,0,0,0.898800331555214,2.68952813725088,0.518448061542388,0.270011876663381,0,0,0,14.3314235081496,24.5364405806685,14.7075005857603,2.20231761998777,2.17068474744819,1.68967186581868,13.0567424852892,11.7104183811084,9.37644067002168,0.837548997004143,1.68828783009504,0.916789486660861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11981512450592,0,0,5.24267237916879,2.74500361691176,15.9581027183338,0.521472960576829,0.511430914660661,5.61027720310812,3.40706652442291,0,0,0,6.52369753248069,30.7084245391981,17.012755728077,29.1700650284666,27.4282768461001,35.5150525569931,32.7971123929215,26.8923949486422,20.4375662883822,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411618449517138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117211686592203,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356497378384721,0,0,0,10.2131881726136,31.1505692674167,54.3306471887569,40.0810255509078,26.0690143454142,25.6851097346982,19.9104314928566,28.6197052167723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80225838477277,1.59609949360412,0.512200817262403,1.70174701947806,1.04806581313991,1.10306105070008,0.888986911206461,0.824140228955577,0.320919209591815,1.76888048234658,1.01391719956096,0.943131706930381,1.21733959710847,1.79270426733634,0.976402972245426,0.952587382566147,0.463537303779422,1.73618298417335,0.824171801606613,0.441596760403192,0.685738504770831,0.532427418478012,0.953744759789284,1.59881058295561,1.31753132581463,0.676916863133412,0.73171189149109,1.05227884575137,0.543216455383447,0.561142271657738,0.593175090620871,1.18205378850676,0.818462086339379,0.929621047115796,0,4.49659040288303,0.701794825336225,0.429742108096597,0,0,0 | |||
|short_description=p3@Six3 | |||
}} |
Revision as of 15:31, 13 September 2013
Short description: | p3@Six3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Six3_5end |
Coexpression cluster: | MCL_coexpression_mm9:578 |
Association with transcript: | 139bp_to_ENSMUST00000043819, ENSMUST00000162695_5end |
EntrezGene: | Six3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.26e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.26e-09 | 23 |
neural cell | 2.83e-09 | 43 |
ectodermal cell | 5.88e-09 | 44 |
neurectodermal cell | 5.88e-09 | 44 |
oligodendrocyte precursor cell | 5.47e-07 | 8 |
oligodendrocyte | 6.30e-07 | 6 |
macroglial cell | 6.30e-07 | 6 |
astrocyte | 6.30e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.