FFCP PHASE1:Mm9::chr11:58198170..58198190,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=314|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:58198170..58198190,+|id=chr11:58198170..58198190,+|ontology_enrichment_celltype=CL:0002563!8.17e-11!9;CL:0002251!8.17e-11!9;CL:0000239!6.99e-08!6;CL:0000677!6.99e-08!6;CL:0000212!6.99e-08!6;CL:0000584!6.99e-08!6|ontology_enrichment_celltype_v019_2=CL:0002563,2.28e-13,9;CL:0002251,2.28e-13,9;CL:0000239,6.61e-12,6;CL:0000677,6.61e-12,6;CL:0000584,6.61e-12,6;CL:0000075,4.07e-10,7;CL:0000066,4.41e-08,25;CL:0000682,1.44e-07,3;CL:0002076,1.61e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!1.26e-30!59;UBERON:0000160!2.36e-26!43;UBERON:0000344!1.50e-18!15;UBERON:0001242!7.70e-16!13;UBERON:0000060!7.70e-16!13;UBERON:0001262!7.70e-16!13;UBERON:0004786!7.70e-16!13;UBERON:0004923!3.71e-11!24;UBERON:0003350!8.17e-11!9;UBERON:0004808!8.17e-11!9;UBERON:0001277!8.17e-11!9;UBERON:0001007!3.68e-09!128;UBERON:0001555!3.68e-09!128;UBERON:0007026!3.68e-09!128;UBERON:0004119!7.71e-09!130;UBERON:0000925!7.71e-09!130;UBERON:0006595!7.71e-09!130;UBERON:0000485!1.86e-08!11;UBERON:0004921!6.32e-08!126;UBERON:0004185!6.32e-08!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.94e-47,31;UBERON:0005409,9.75e-46,47;UBERON:0000344,8.86e-26,15;UBERON:0001242,2.06e-21,13;UBERON:0001262,2.06e-21,13;UBERON:0004786,2.06e-21,13;UBERON:0001007,9.78e-17,116;UBERON:0001555,9.78e-17,116;UBERON:0007026,9.78e-17,116;UBERON:0004119,2.54e-16,118;UBERON:0000925,2.54e-16,118;UBERON:0006595,2.54e-16,118;UBERON:0004923,6.83e-15,24;UBERON:0004921,1.77e-14,114;UBERON:0003350,2.28e-13,9;UBERON:0004808,2.28e-13,9;UBERON:0001277,2.28e-13,9;UBERON:0000485,1.04e-10,11;UBERON:0002108,6.15e-10,4;UBERON:0000331,3.30e-08,3;UBERON:0002116,3.30e-08,3;UBERON:0001204,3.30e-08,3;UBERON:0001168,3.30e-08,3|phase1_expression=0,2.79180326111489,3.18499467572675,2.41971369045464,3.00537437967808,1.84667199103079,5.37309073369709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.239515058778,7.57050627521661,6.89078356938024,3.4460959692726,8.18790684206378,13.1116159424898,7.56090389279792,9.5344119581781,0,0,0,0.866554859253824,1.99481574430191,2.6542016314108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,2.16949371466214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.775258509631,0,0,8.43008282188352,0,0,0,0,0,0,0,0,0,0,0,0.248813941220186,7.32895999457657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98251269790279,3.70230793328962,0,0.232236671860439,0.77320476793256,3.63030344322017,3.55804870151792,4.37518940058886,6.64340686162316,5.76446341534038,9.80207314321051,7.56034593756373,4.48417400373976,4.49409704327111,12.9682829924817,10.7536287557358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302323556964751,0,0,0,1.55056975900933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164140899745061,3.20628920292836,0,0,0,0.185194527369712,0,0,0,0,0,0,19.0934123603023,0,0,0.540026704109006,0.836353184057875,1.52853794622324,3.2367443132357,1.65306911450672,4.71160695571253,31.4964385099057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0,0,0,0.758091635291392,0,0.188626341386076,0.0936415074698824,0.192075457214608,0.17230640686684,0,0.231768651889711,0.192909220463705,0,0.441596760403192,0,0.354951612318675,0.238436189947321,0,0.188218760830661,0,0,0,0.271608227691724,0.561142271657738,0.118635018124174,0.0985044823755635,0.818462086339379,0.154936841185966,0.192906610981141,0,0.233931608445408,0.214871054048298,0,0,0|short_description=p@chr11:58198170..58198190,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=314 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:58198170..58198190,+ | |||
|id=chr11:58198170..58198190,+ | |||
|ontology_enrichment_celltype=CL:0002563!8.17e-11!9;CL:0002251!8.17e-11!9;CL:0000239!6.99e-08!6;CL:0000677!6.99e-08!6;CL:0000212!6.99e-08!6;CL:0000584!6.99e-08!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.28e-13,9;CL:0002251,2.28e-13,9;CL:0000239,6.61e-12,6;CL:0000677,6.61e-12,6;CL:0000584,6.61e-12,6;CL:0000075,4.07e-10,7;CL:0000066,4.41e-08,25;CL:0000682,1.44e-07,3;CL:0002076,1.61e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!1.26e-30!59;UBERON:0000160!2.36e-26!43;UBERON:0000344!1.50e-18!15;UBERON:0001242!7.70e-16!13;UBERON:0000060!7.70e-16!13;UBERON:0001262!7.70e-16!13;UBERON:0004786!7.70e-16!13;UBERON:0004923!3.71e-11!24;UBERON:0003350!8.17e-11!9;UBERON:0004808!8.17e-11!9;UBERON:0001277!8.17e-11!9;UBERON:0001007!3.68e-09!128;UBERON:0001555!3.68e-09!128;UBERON:0007026!3.68e-09!128;UBERON:0004119!7.71e-09!130;UBERON:0000925!7.71e-09!130;UBERON:0006595!7.71e-09!130;UBERON:0000485!1.86e-08!11;UBERON:0004921!6.32e-08!126;UBERON:0004185!6.32e-08!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.94e-47,31;UBERON:0005409,9.75e-46,47;UBERON:0000344,8.86e-26,15;UBERON:0001242,2.06e-21,13;UBERON:0001262,2.06e-21,13;UBERON:0004786,2.06e-21,13;UBERON:0001007,9.78e-17,116;UBERON:0001555,9.78e-17,116;UBERON:0007026,9.78e-17,116;UBERON:0004119,2.54e-16,118;UBERON:0000925,2.54e-16,118;UBERON:0006595,2.54e-16,118;UBERON:0004923,6.83e-15,24;UBERON:0004921,1.77e-14,114;UBERON:0003350,2.28e-13,9;UBERON:0004808,2.28e-13,9;UBERON:0001277,2.28e-13,9;UBERON:0000485,1.04e-10,11;UBERON:0002108,6.15e-10,4;UBERON:0000331,3.30e-08,3;UBERON:0002116,3.30e-08,3;UBERON:0001204,3.30e-08,3;UBERON:0001168,3.30e-08,3 | |||
|phase1_expression=0,2.79180326111489,3.18499467572675,2.41971369045464,3.00537437967808,1.84667199103079,5.37309073369709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.239515058778,7.57050627521661,6.89078356938024,3.4460959692726,8.18790684206378,13.1116159424898,7.56090389279792,9.5344119581781,0,0,0,0.866554859253824,1.99481574430191,2.6542016314108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,2.16949371466214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.775258509631,0,0,8.43008282188352,0,0,0,0,0,0,0,0,0,0,0,0.248813941220186,7.32895999457657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98251269790279,3.70230793328962,0,0.232236671860439,0.77320476793256,3.63030344322017,3.55804870151792,4.37518940058886,6.64340686162316,5.76446341534038,9.80207314321051,7.56034593756373,4.48417400373976,4.49409704327111,12.9682829924817,10.7536287557358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302323556964751,0,0,0,1.55056975900933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164140899745061,3.20628920292836,0,0,0,0.185194527369712,0,0,0,0,0,0,19.0934123603023,0,0,0.540026704109006,0.836353184057875,1.52853794622324,3.2367443132357,1.65306911450672,4.71160695571253,31.4964385099057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0,0,0,0.758091635291392,0,0.188626341386076,0.0936415074698824,0.192075457214608,0.17230640686684,0,0.231768651889711,0.192909220463705,0,0.441596760403192,0,0.354951612318675,0.238436189947321,0,0.188218760830661,0,0,0,0.271608227691724,0.561142271657738,0.118635018124174,0.0985044823755635,0.818462086339379,0.154936841185966,0.192906610981141,0,0.233931608445408,0.214871054048298,0,0,0 | |||
|short_description=p@chr11:58198170..58198190,+ | |||
}} |
Revision as of 20:07, 12 September 2013
Short description: | p@chr11:58198170..58198190, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:58198170..58198190, + |
Coexpression cluster: | MCL_coexpression_mm9:314 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.28e-13 | 9 |
epithelial cell of alimentary canal | 2.28e-13 | 9 |
brush border epithelial cell | 6.61e-12 | 6 |
gut absorptive cell | 6.61e-12 | 6 |
enterocyte | 6.61e-12 | 6 |
columnar/cuboidal epithelial cell | 4.07e-10 | 7 |
epithelial cell | 4.41e-08 | 25 |
M cell of gut | 1.44e-07 | 3 |
endo-epithelial cell | 1.61e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.94e-47 | 31 |
gastrointestinal system | 9.75e-46 | 47 |
mucosa | 8.86e-26 | 15 |
intestinal mucosa | 2.06e-21 | 13 |
wall of intestine | 2.06e-21 | 13 |
gastrointestinal system mucosa | 2.06e-21 | 13 |
digestive system | 9.78e-17 | 116 |
digestive tract | 9.78e-17 | 116 |
primitive gut | 9.78e-17 | 116 |
endoderm-derived structure | 2.54e-16 | 118 |
endoderm | 2.54e-16 | 118 |
presumptive endoderm | 2.54e-16 | 118 |
organ component layer | 6.83e-15 | 24 |
subdivision of digestive tract | 1.77e-14 | 114 |
epithelium of mucosa | 2.28e-13 | 9 |
gastrointestinal system epithelium | 2.28e-13 | 9 |
intestinal epithelium | 2.28e-13 | 9 |
simple columnar epithelium | 1.04e-10 | 11 |
small intestine | 6.15e-10 | 4 |
ileal mucosa | 3.30e-08 | 3 |
ileum | 3.30e-08 | 3 |
mucosa of small intestine | 3.30e-08 | 3 |
wall of small intestine | 3.30e-08 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.