FFCP PHASE1:Mm9::chr15:103333498..103333519,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18574|HGNC=|MCL_coexpression_id=90|UniProt=Q6PDS5|association_with_transcript=33bp_to_ENSMUST00000172180_5end|description=CAGE_peak_4_at_Pde1b_5end|id=chr15:103333498..103333519,+|ontology_enrichment_celltype=CL:0000117!4.74e-17!23;CL:0000337!4.74e-17!23;CL:0000540!6.85e-12!33;CL:0000047!6.85e-12!33;CL:0000031!6.85e-12!33;CL:0000404!6.85e-12!33;CL:0002319!5.73e-09!43;CL:0000221!1.58e-08!44;CL:0000133!1.58e-08!44;CL:0000393!1.63e-08!39;CL:0000211!1.63e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,4.02e-26,23;CL:0000337,4.02e-26,23;CL:0000540,7.10e-17,33;CL:0000047,7.10e-17,33;CL:0000031,7.10e-17,33;CL:0000404,7.10e-17,33;CL:0000393,1.29e-13,39;CL:0000211,1.29e-13,39;CL:0002319,5.92e-12,43;CL:0000221,1.38e-11,44;CL:0000133,1.38e-11,44;CL:0002610,6.91e-08,3;CL:0002614,1.42e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.04e-25!71;UBERON:0003075!2.04e-25!71;UBERON:0007284!2.04e-25!71;UBERON:0000073!4.94e-25!75;UBERON:0001016!4.94e-25!75;UBERON:0000033!8.69e-25!63;UBERON:0001017!1.73e-24!73;UBERON:0005743!1.73e-24!73;UBERON:0001049!3.56e-24!52;UBERON:0005068!3.56e-24!52;UBERON:0006241!3.56e-24!52;UBERON:0007135!3.56e-24!52;UBERON:0000955!4.60e-23!50;UBERON:0006238!4.60e-23!50;UBERON:0004121!7.14e-23!102;UBERON:0000924!7.14e-23!102;UBERON:0006601!7.14e-23!102;UBERON:0002616!3.86e-22!49;UBERON:0003056!9.98e-22!49;UBERON:0002020!1.62e-21!34;UBERON:0003080!2.46e-18!40;UBERON:0002791!7.34e-18!29;UBERON:0003528!7.34e-18!29;UBERON:0001893!7.34e-18!29;UBERON:0002780!1.84e-17!39;UBERON:0001890!1.84e-17!39;UBERON:0006240!1.84e-17!39;UBERON:0007811!1.41e-15!86;UBERON:0000153!1.11e-13!94;UBERON:0000956!5.59e-12!21;UBERON:0001869!5.59e-12!21;UBERON:0000203!5.59e-12!21;UBERON:0002619!2.31e-09!17;UBERON:0002021!1.63e-08!10;UBERON:0000411!1.63e-08!10;UBERON:0001950!1.63e-08!10;UBERON:0002420!3.32e-07!8;UBERON:0007245!3.32e-07!8;UBERON:0010009!3.32e-07!8;UBERON:0010011!3.32e-07!8;UBERON:0000454!3.32e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.22e-43,54;UBERON:0001017,2.92e-41,73;UBERON:0001016,6.05e-40,75;UBERON:0001049,2.52e-39,52;UBERON:0005068,2.52e-39,52;UBERON:0006241,2.52e-39,52;UBERON:0007135,2.52e-39,52;UBERON:0002020,2.96e-34,34;UBERON:0000955,3.38e-33,47;UBERON:0006238,3.38e-33,47;UBERON:0002616,3.27e-31,46;UBERON:0002346,1.56e-30,64;UBERON:0003075,1.56e-30,64;UBERON:0007284,1.56e-30,64;UBERON:0004121,8.21e-30,95;UBERON:0000924,8.21e-30,95;UBERON:0006601,8.21e-30,95;UBERON:0003528,3.26e-28,29;UBERON:0002791,3.26e-28,29;UBERON:0001893,3.26e-28,29;UBERON:0003080,1.76e-26,40;UBERON:0010371,7.80e-26,73;UBERON:0002780,1.29e-24,39;UBERON:0001890,1.29e-24,39;UBERON:0006240,1.29e-24,39;UBERON:0003056,1.60e-20,49;UBERON:0010314,6.24e-19,92;UBERON:0000956,5.09e-17,21;UBERON:0001869,5.09e-17,21;UBERON:0000203,5.09e-17,21;UBERON:0002021,5.02e-16,10;UBERON:0000411,5.02e-16,10;UBERON:0001950,5.02e-16,10;UBERON:0000025,8.18e-14,114;UBERON:0002619,3.49e-13,17;UBERON:0003076,5.25e-13,12;UBERON:0003057,5.25e-13,12;UBERON:0002420,9.26e-13,8;UBERON:0007245,9.26e-13,8;UBERON:0010009,9.26e-13,8;UBERON:0010011,9.26e-13,8;UBERON:0000454,9.26e-13,8;UBERON:0004111,2.07e-12,122;UBERON:0011216,2.62e-10,194;UBERON:0002950,8.29e-10,4;UBERON:0001891,8.29e-10,4;UBERON:0009616,8.29e-10,4;UBERON:0010286,8.29e-10,4;UBERON:0002240,3.50e-09,6;UBERON:0005174,3.50e-09,6;UBERON:0001137,3.50e-09,6;UBERON:0004684,6.91e-08,3;UBERON:0002275,6.91e-08,3;UBERON:0002038,1.42e-07,3;UBERON:0009663,1.42e-07,3;UBERON:0009661,1.42e-07,3;UBERON:0000125,1.42e-07,3;UBERON:0002308,1.42e-07,3;UBERON:0001948,4.42e-07,5;UBERON:0002315,4.42e-07,5;UBERON:0000369,5.14e-07,5;UBERON:0002435,5.14e-07,5;UBERON:0000204,5.14e-07,5;UBERON:0010082,5.14e-07,5|phase1_expression=0.320297694209588,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,1.61582251287033,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0.418531630736908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42779753031517,1.5869729378161,1.90149421051854,0,0.889294796111139,0,0,0,0,0.768436610643109,0.518448061542388,1.75507719831198,1.47227472945967,3.71346279724945,5.30084498283872,0.61245399607477,0.479227355091182,2.75765635983006,6.60695285996332,7.15049093277051,4.91540906419979,1.18697658957174,1.64677758484337,0.52091337055676,6.14202597803038,3.93933827022176,4.88954392885792,0.589257170947335,2.70506193518296,1.67759501242771,0.075726193333184,0.302286240427142,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0.148442139064825,0,0.304465478312141,0.230615497256059,0,0,0.125666591329675,0,0.144599356919912,0,0,0,0,0,1.17112318804619,1.25668024088073,0,0,0,0,7.78911324905078,32.4825428001225,3.14135880282161,7.47444576826789,6.13717097592793,7.68815764870372,11.1946471516753,0,0,0,0.420883711772948,0,0.229902104433473,0.900310649026746,0.60281927134286,0.680364991513279,0.640568601424249,0.749613796477831,0.258703370739016,0,0,0.175951124163949,0,0,0,0.205782136407943,0,0,0,0,0,0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| ||
|EntrezGene=18574 | |||
|HGNC= | |||
|MCL_coexpression_id=90 | |||
|UniProt=Q6PDS5 | |||
|association_with_transcript=33bp_to_ENSMUST00000172180_5end | |||
|description=CAGE_peak_4_at_Pde1b_5end | |||
|id=chr15:103333498..103333519,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.74e-17!23;CL:0000337!4.74e-17!23;CL:0000540!6.85e-12!33;CL:0000047!6.85e-12!33;CL:0000031!6.85e-12!33;CL:0000404!6.85e-12!33;CL:0002319!5.73e-09!43;CL:0000221!1.58e-08!44;CL:0000133!1.58e-08!44;CL:0000393!1.63e-08!39;CL:0000211!1.63e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.02e-26,23;CL:0000337,4.02e-26,23;CL:0000540,7.10e-17,33;CL:0000047,7.10e-17,33;CL:0000031,7.10e-17,33;CL:0000404,7.10e-17,33;CL:0000393,1.29e-13,39;CL:0000211,1.29e-13,39;CL:0002319,5.92e-12,43;CL:0000221,1.38e-11,44;CL:0000133,1.38e-11,44;CL:0002610,6.91e-08,3;CL:0002614,1.42e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.04e-25!71;UBERON:0003075!2.04e-25!71;UBERON:0007284!2.04e-25!71;UBERON:0000073!4.94e-25!75;UBERON:0001016!4.94e-25!75;UBERON:0000033!8.69e-25!63;UBERON:0001017!1.73e-24!73;UBERON:0005743!1.73e-24!73;UBERON:0001049!3.56e-24!52;UBERON:0005068!3.56e-24!52;UBERON:0006241!3.56e-24!52;UBERON:0007135!3.56e-24!52;UBERON:0000955!4.60e-23!50;UBERON:0006238!4.60e-23!50;UBERON:0004121!7.14e-23!102;UBERON:0000924!7.14e-23!102;UBERON:0006601!7.14e-23!102;UBERON:0002616!3.86e-22!49;UBERON:0003056!9.98e-22!49;UBERON:0002020!1.62e-21!34;UBERON:0003080!2.46e-18!40;UBERON:0002791!7.34e-18!29;UBERON:0003528!7.34e-18!29;UBERON:0001893!7.34e-18!29;UBERON:0002780!1.84e-17!39;UBERON:0001890!1.84e-17!39;UBERON:0006240!1.84e-17!39;UBERON:0007811!1.41e-15!86;UBERON:0000153!1.11e-13!94;UBERON:0000956!5.59e-12!21;UBERON:0001869!5.59e-12!21;UBERON:0000203!5.59e-12!21;UBERON:0002619!2.31e-09!17;UBERON:0002021!1.63e-08!10;UBERON:0000411!1.63e-08!10;UBERON:0001950!1.63e-08!10;UBERON:0002420!3.32e-07!8;UBERON:0007245!3.32e-07!8;UBERON:0010009!3.32e-07!8;UBERON:0010011!3.32e-07!8;UBERON:0000454!3.32e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.22e-43,54;UBERON:0001017,2.92e-41,73;UBERON:0001016,6.05e-40,75;UBERON:0001049,2.52e-39,52;UBERON:0005068,2.52e-39,52;UBERON:0006241,2.52e-39,52;UBERON:0007135,2.52e-39,52;UBERON:0002020,2.96e-34,34;UBERON:0000955,3.38e-33,47;UBERON:0006238,3.38e-33,47;UBERON:0002616,3.27e-31,46;UBERON:0002346,1.56e-30,64;UBERON:0003075,1.56e-30,64;UBERON:0007284,1.56e-30,64;UBERON:0004121,8.21e-30,95;UBERON:0000924,8.21e-30,95;UBERON:0006601,8.21e-30,95;UBERON:0003528,3.26e-28,29;UBERON:0002791,3.26e-28,29;UBERON:0001893,3.26e-28,29;UBERON:0003080,1.76e-26,40;UBERON:0010371,7.80e-26,73;UBERON:0002780,1.29e-24,39;UBERON:0001890,1.29e-24,39;UBERON:0006240,1.29e-24,39;UBERON:0003056,1.60e-20,49;UBERON:0010314,6.24e-19,92;UBERON:0000956,5.09e-17,21;UBERON:0001869,5.09e-17,21;UBERON:0000203,5.09e-17,21;UBERON:0002021,5.02e-16,10;UBERON:0000411,5.02e-16,10;UBERON:0001950,5.02e-16,10;UBERON:0000025,8.18e-14,114;UBERON:0002619,3.49e-13,17;UBERON:0003076,5.25e-13,12;UBERON:0003057,5.25e-13,12;UBERON:0002420,9.26e-13,8;UBERON:0007245,9.26e-13,8;UBERON:0010009,9.26e-13,8;UBERON:0010011,9.26e-13,8;UBERON:0000454,9.26e-13,8;UBERON:0004111,2.07e-12,122;UBERON:0011216,2.62e-10,194;UBERON:0002950,8.29e-10,4;UBERON:0001891,8.29e-10,4;UBERON:0009616,8.29e-10,4;UBERON:0010286,8.29e-10,4;UBERON:0002240,3.50e-09,6;UBERON:0005174,3.50e-09,6;UBERON:0001137,3.50e-09,6;UBERON:0004684,6.91e-08,3;UBERON:0002275,6.91e-08,3;UBERON:0002038,1.42e-07,3;UBERON:0009663,1.42e-07,3;UBERON:0009661,1.42e-07,3;UBERON:0000125,1.42e-07,3;UBERON:0002308,1.42e-07,3;UBERON:0001948,4.42e-07,5;UBERON:0002315,4.42e-07,5;UBERON:0000369,5.14e-07,5;UBERON:0002435,5.14e-07,5;UBERON:0000204,5.14e-07,5;UBERON:0010082,5.14e-07,5 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,1.61582251287033,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0.418531630736908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42779753031517,1.5869729378161,1.90149421051854,0,0.889294796111139,0,0,0,0,0.768436610643109,0.518448061542388,1.75507719831198,1.47227472945967,3.71346279724945,5.30084498283872,0.61245399607477,0.479227355091182,2.75765635983006,6.60695285996332,7.15049093277051,4.91540906419979,1.18697658957174,1.64677758484337,0.52091337055676,6.14202597803038,3.93933827022176,4.88954392885792,0.589257170947335,2.70506193518296,1.67759501242771,0.075726193333184,0.302286240427142,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0.148442139064825,0,0.304465478312141,0.230615497256059,0,0,0.125666591329675,0,0.144599356919912,0,0,0,0,0,1.17112318804619,1.25668024088073,0,0,0,0,7.78911324905078,32.4825428001225,3.14135880282161,7.47444576826789,6.13717097592793,7.68815764870372,11.1946471516753,0,0,0,0.420883711772948,0,0.229902104433473,0.900310649026746,0.60281927134286,0.680364991513279,0.640568601424249,0.749613796477831,0.258703370739016,0,0,0.175951124163949,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,3.57492912559016,0.617427674275707,0,0,0,0,0.128867461322093,0,0,0,0.474529061544512,0,0,0,0.19496408711912,0,0.216138049874694,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0.339490171550376,0,0.167506257441816,0,0.195133647857799,0,0,0.159454768657487,0,0,0.144649058581512,0,0,0,0,5.61927064957272,3.28192722458169,0,0,0,0,0.215423397732799,0,0,0,0,0.584511715822624,0,8.9969968598106,0,0,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0.214337035031592,0.177340233642274,0.178368817602071,0,0,0.23467170806371,0,0.220528398054962,0,0,0.0603129249281559,0,0,0,8.71498919449395,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0.209088296014469,0.218362563746178,0.134864346384821,0.247960367176008,0.26175594198403,0.129614973291793,0,0,0,0,0.194451188344048,0.129159823477731,0,0,0.2604087696879,0,0,0,0.316011120628178,0,0,0,0,0,0.120195449519969,0,0,0.15241361331,0,0,0.0962118416403295,0.116876902181569,0,0,0,0,0.19318959403219,0,0,0,0,1.12950368523413,1.84130094602871,0.572895513439397,1.3748254587495,3.42541259885321,3.7769694869485,3.37511250115903,6.75481804836331,6.34399372577886,4.65984280576638,0,0,0.341467211508268,0.243106717068294,0.838452650511929,0.183843508450014,0,0.206035057238894,0.64183841918363,0,0,0.377252682772152,0.280924522409647,0.256100609619477,0.229741875822453,0,0.347652977834566,0.192909220463705,0.412085900803307,0.588795680537589,0.342869252385415,0,0.476872379894642,0,0.376437521661322,0.169229215783353,0,0.263069711437843,0,0,0.474540072496697,0.197008964751127,0,0.154936841185966,0.192906610981141,0.249810577937946,0,0.429742108096597,0.191288332068843,0.220591419119515,0 | |||
|short_description=p4@Pde1b | |||
}} |
Revision as of 10:11, 13 September 2013
Short description: | p4@Pde1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Pde1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:90 |
Association with transcript: | 33bp_to_ENSMUST00000172180_5end |
EntrezGene: | Pde1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.02e-26 | 23 |
neuroblast (sensu Vertebrata) | 4.02e-26 | 23 |
neuron | 7.10e-17 | 33 |
neuronal stem cell | 7.10e-17 | 33 |
neuroblast | 7.10e-17 | 33 |
electrically signaling cell | 7.10e-17 | 33 |
electrically responsive cell | 1.29e-13 | 39 |
electrically active cell | 1.29e-13 | 39 |
neural cell | 5.92e-12 | 43 |
ectodermal cell | 1.38e-11 | 44 |
neurectodermal cell | 1.38e-11 | 44 |
raphe nuclei neuron | 6.91e-08 | 3 |
neuron of the substantia nigra | 1.42e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.