FFCP PHASE1:Mm9::chr3:105618448..105618473,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=187|UniProt=|association_with_transcript=-11bp_to_uc008qvf.1_5end|description=CAGE_peak_1_at_uc008qvf.1_5end|id=chr3:105618448..105618473,+|ontology_enrichment_celltype=CL:0000988!7.69e-09!32;CL:0002032!7.69e-09!32;CL:0000037!7.69e-09!32;CL:0000566!7.69e-09!32;CL:0000837!7.69e-09!32;CL:0002031!7.13e-08!25|ontology_enrichment_celltype_v019_2=CL:0002031,2.38e-17,25;CL:0000553,1.27e-15,6;CL:0000556,1.27e-15,6;CL:0000988,8.77e-15,32;CL:0002032,8.77e-15,32;CL:0000037,8.77e-15,32;CL:0000837,8.77e-15,32;CL:0000050,3.68e-10,9;CL:0000838,9.56e-10,12;CL:0002320,3.05e-09,46;CL:0000134,3.05e-09,46;CL:0000763,5.72e-09,16;CL:0000542,6.50e-09,13;CL:0000051,6.50e-09,13;CL:0000839,7.09e-09,13;CL:0000738,2.43e-08,17;CL:0002087,2.43e-08,17;CL:0002027,3.28e-08,3;CL:0002006,3.28e-08,3;CL:0002024,3.28e-08,3;CL:0000084,4.15e-08,11;CL:0000827,4.15e-08,11;CL:0000219,2.21e-07,54;CL:0000049,2.44e-07,19|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!7.96e-15!48;UBERON:0002390!1.06e-12!45;UBERON:0003061!1.06e-12!45;UBERON:0004177!2.19e-11!29;UBERON:0002405!5.16e-10!70;UBERON:0003081!6.11e-09!88;UBERON:0002370!3.82e-08!23;UBERON:0000974!3.82e-08!23;UBERON:0004807!3.82e-08!23;UBERON:0005058!3.82e-08!23;UBERON:0003351!3.82e-08!23;UBERON:0009113!3.82e-08!23;UBERON:0003295!3.82e-08!23;UBERON:0009722!3.82e-08!23;UBERON:0005562!3.82e-08!23;UBERON:0007690!3.82e-08!23;UBERON:0006562!1.64e-07!24;UBERON:0003408!1.64e-07!24;UBERON:0001557!1.64e-07!24;UBERON:0001042!1.64e-07!24;UBERON:0008814!1.64e-07!24;UBERON:0009145!1.64e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.62e-27,48;UBERON:0002405,2.62e-27,48;UBERON:0002390,6.11e-22,45;UBERON:0003061,6.11e-22,45;UBERON:0004177,1.25e-13,29;UBERON:0005057,1.25e-13,29;UBERON:0000077,1.54e-12,35;UBERON:0002370,1.37e-10,23;UBERON:0000974,1.37e-10,23;UBERON:0004807,1.37e-10,23;UBERON:0005058,1.37e-10,23;UBERON:0003351,1.37e-10,23;UBERON:0009113,1.37e-10,23;UBERON:0003295,1.37e-10,23;UBERON:0009722,1.37e-10,23;UBERON:0005562,1.37e-10,23;UBERON:0007690,1.37e-10,23;UBERON:0006562,4.69e-10,24;UBERON:0003408,4.69e-10,24;UBERON:0001557,4.69e-10,24;UBERON:0001042,4.69e-10,24;UBERON:0008814,4.69e-10,24;UBERON:0009145,4.69e-10,24;UBERON:0003081,6.02e-10,87;UBERON:0002384,3.05e-09,46;UBERON:0002371,5.72e-09,16;UBERON:0000072,1.07e-08,27;UBERON:0002465,1.75e-08,3;UBERON:0001474,1.01e-07,22;UBERON:0004765,1.01e-07,22;UBERON:0001434,1.01e-07,22;UBERON:0000065,3.51e-07,41;UBERON:0001004,5.99e-07,42|phase1_expression=0,0,0,0,0,0,0,0.516493293766305,0.703943610758334,0.70219357896598,0,0,9.41604014621631,1.31130603628496,3.33109761815663,2.63217847606774,1.39912375625629,4.88966356305268,7.54129384831563,3.39511721438424,0,2.08510997521859,2.08959831311148,1.59992422793407,2.52350209173887,0,0,0,0,0,0.665191531965914,0,0.61506478758457,0,0,0,0,0,0.7813353445238,0.523523743973798,0.588231488031014,0.683045484958446,0,0,0,0,0,0,0,0,0,0,1.51004345451963,6.5282592781021,14.1159395639835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0.151452386666368,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,9.58070169494535,0.593768556259299,0.173485326766136,0,0,0.150722640552623,0.117588707135705,0,0,0.722996784599558,0.884610551949874,0.161766849947409,0.220841518460394,1.45462575940567,0,0,0,2.29911349687732,0.479260498023681,0.599902730993408,0.635351135365324,0,0,0,0,0,0,0.162241263067758,0.101839363850316,0.497627882440372,0.252722758433675,0.210441855886474,0,0,0,0.30140963567143,0.0680364991513279,0,0.0937017245597288,0,0,0,0.175951124163949,0,0,0,0.205782136407943,0,1.40442637462647,0.51469581422943,0,0,0.234526059981096,0.36012412292203,0,0,0,0,0,0,0,0.164167464079095,0.0810688095458557,0.292399974850665,0.878200461164203,0,0,0,0.660837565967596,0.528901133327089,0,0,0.128867461322093,0,0.22237804384487,0.190225626112559,0.474529061544512,0.164698954724011,0.502670417600539,0.397912944082302,0.38992817423824,0,0,0.995706366271836,0,0,0,0,0,0,0,0,0.156998727841375,0,0,0.333690211432188,0.196558995113203,0,0.202860121388503,0,0,0,0.162135226775035,0.274561413188081,0,0.744281895337007,0.312037673114561,0,0.179397413521912,0,1.66277871149944,0,0,0,0,0.167506257441816,0,0,0.315270288212382,0.44292937929755,0.318909537314974,0.983179888294428,1.20879487306127,0.867894351489069,0,1.08781136763742,0,0.551873492609465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0.494910368917606,1.32745138339963,0,0,0,0,0,0.258428293168221,0,0.356497378384721,0,0,1.03135543248187,0.340439605753788,0.18006109403131,0,0,0,0,0,0,0.23467170806371,0.21183207086382,1.7642271844397,0.98931751764888,0,0.180938774784468,0,0,0.582961673259701,0.18542530201051,3.41741761595705,0.206386867963223,0.555583582109135,0.941842285023455,1.6403307326523,3.20289442489132,0.679913719975421,0.69975726161829,0.276399947608848,0,0,0,0,0.209088296014469,0.218362563746178,0,0.165306911450672,0.523511883968059,0.648074866458964,0,0,0,0.165458490457098,0.194451188344048,0,0,0.117357238645754,0,0,0,0,0.948033361884535,0.202725215290164,1.02710957164827,0.909445760844565,0.895133478337407,1.78813219303138,1.80293174279953,0.886137163047463,1.71642964911851,2.59103142626999,1.41156659191577,1.55932609183604,1.05833025804362,2.68816875017609,0,0,0,0,0,0.375364950902364,0.183151624267265,0.428736758158132,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,0,0,0,0.183843508450014,0,0,0,0,0.25347929989024,0,0,0.0640251524048693,0.0574354689556133,0.952587382566147,0.115884325944855,0,0.412085900803307,0,0,0,0,0.145346416632329,0,0,0,0,0,0,0,0,0,0,0.192906610981141,0.249810577937946,0,0.429742108096597,0.191288332068843,0.441182838239031,0.463735671240843|short_description=p1@uc008qvf.1}} | ||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=187 | |||
|UniProt= | |||
|association_with_transcript=-11bp_to_uc008qvf.1_5end | |||
|description=CAGE_peak_1_at_uc008qvf.1_5end | |||
|id=chr3:105618448..105618473,+ | |||
|ontology_enrichment_celltype=CL:0000988!7.69e-09!32;CL:0002032!7.69e-09!32;CL:0000037!7.69e-09!32;CL:0000566!7.69e-09!32;CL:0000837!7.69e-09!32;CL:0002031!7.13e-08!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,2.38e-17,25;CL:0000553,1.27e-15,6;CL:0000556,1.27e-15,6;CL:0000988,8.77e-15,32;CL:0002032,8.77e-15,32;CL:0000037,8.77e-15,32;CL:0000837,8.77e-15,32;CL:0000050,3.68e-10,9;CL:0000838,9.56e-10,12;CL:0002320,3.05e-09,46;CL:0000134,3.05e-09,46;CL:0000763,5.72e-09,16;CL:0000542,6.50e-09,13;CL:0000051,6.50e-09,13;CL:0000839,7.09e-09,13;CL:0000738,2.43e-08,17;CL:0002087,2.43e-08,17;CL:0002027,3.28e-08,3;CL:0002006,3.28e-08,3;CL:0002024,3.28e-08,3;CL:0000084,4.15e-08,11;CL:0000827,4.15e-08,11;CL:0000219,2.21e-07,54;CL:0000049,2.44e-07,19 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!7.96e-15!48;UBERON:0002390!1.06e-12!45;UBERON:0003061!1.06e-12!45;UBERON:0004177!2.19e-11!29;UBERON:0002405!5.16e-10!70;UBERON:0003081!6.11e-09!88;UBERON:0002370!3.82e-08!23;UBERON:0000974!3.82e-08!23;UBERON:0004807!3.82e-08!23;UBERON:0005058!3.82e-08!23;UBERON:0003351!3.82e-08!23;UBERON:0009113!3.82e-08!23;UBERON:0003295!3.82e-08!23;UBERON:0009722!3.82e-08!23;UBERON:0005562!3.82e-08!23;UBERON:0007690!3.82e-08!23;UBERON:0006562!1.64e-07!24;UBERON:0003408!1.64e-07!24;UBERON:0001557!1.64e-07!24;UBERON:0001042!1.64e-07!24;UBERON:0008814!1.64e-07!24;UBERON:0009145!1.64e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.62e-27,48;UBERON:0002405,2.62e-27,48;UBERON:0002390,6.11e-22,45;UBERON:0003061,6.11e-22,45;UBERON:0004177,1.25e-13,29;UBERON:0005057,1.25e-13,29;UBERON:0000077,1.54e-12,35;UBERON:0002370,1.37e-10,23;UBERON:0000974,1.37e-10,23;UBERON:0004807,1.37e-10,23;UBERON:0005058,1.37e-10,23;UBERON:0003351,1.37e-10,23;UBERON:0009113,1.37e-10,23;UBERON:0003295,1.37e-10,23;UBERON:0009722,1.37e-10,23;UBERON:0005562,1.37e-10,23;UBERON:0007690,1.37e-10,23;UBERON:0006562,4.69e-10,24;UBERON:0003408,4.69e-10,24;UBERON:0001557,4.69e-10,24;UBERON:0001042,4.69e-10,24;UBERON:0008814,4.69e-10,24;UBERON:0009145,4.69e-10,24;UBERON:0003081,6.02e-10,87;UBERON:0002384,3.05e-09,46;UBERON:0002371,5.72e-09,16;UBERON:0000072,1.07e-08,27;UBERON:0002465,1.75e-08,3;UBERON:0001474,1.01e-07,22;UBERON:0004765,1.01e-07,22;UBERON:0001434,1.01e-07,22;UBERON:0000065,3.51e-07,41;UBERON:0001004,5.99e-07,42 | |||
|phase1_expression=0,0,0,0,0,0,0,0.516493293766305,0.703943610758334,0.70219357896598,0,0,9.41604014621631,1.31130603628496,3.33109761815663,2.63217847606774,1.39912375625629,4.88966356305268,7.54129384831563,3.39511721438424,0,2.08510997521859,2.08959831311148,1.59992422793407,2.52350209173887,0,0,0,0,0,0.665191531965914,0,0.61506478758457,0,0,0,0,0,0.7813353445238,0.523523743973798,0.588231488031014,0.683045484958446,0,0,0,0,0,0,0,0,0,0,1.51004345451963,6.5282592781021,14.1159395639835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0.151452386666368,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,9.58070169494535,0.593768556259299,0.173485326766136,0,0,0.150722640552623,0.117588707135705,0,0,0.722996784599558,0.884610551949874,0.161766849947409,0.220841518460394,1.45462575940567,0,0,0,2.29911349687732,0.479260498023681,0.599902730993408,0.635351135365324,0,0,0,0,0,0,0.162241263067758,0.101839363850316,0.497627882440372,0.252722758433675,0.210441855886474,0,0,0,0.30140963567143,0.0680364991513279,0,0.0937017245597288,0,0,0,0.175951124163949,0,0,0,0.205782136407943,0,1.40442637462647,0.51469581422943,0,0,0.234526059981096,0.36012412292203,0,0,0,0,0,0,0,0.164167464079095,0.0810688095458557,0.292399974850665,0.878200461164203,0,0,0,0.660837565967596,0.528901133327089,0,0,0.128867461322093,0,0.22237804384487,0.190225626112559,0.474529061544512,0.164698954724011,0.502670417600539,0.397912944082302,0.38992817423824,0,0,0.995706366271836,0,0,0,0,0,0,0,0,0.156998727841375,0,0,0.333690211432188,0.196558995113203,0,0.202860121388503,0,0,0,0.162135226775035,0.274561413188081,0,0.744281895337007,0.312037673114561,0,0.179397413521912,0,1.66277871149944,0,0,0,0,0.167506257441816,0,0,0.315270288212382,0.44292937929755,0.318909537314974,0.983179888294428,1.20879487306127,0.867894351489069,0,1.08781136763742,0,0.551873492609465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0.494910368917606,1.32745138339963,0,0,0,0,0,0.258428293168221,0,0.356497378384721,0,0,1.03135543248187,0.340439605753788,0.18006109403131,0,0,0,0,0,0,0.23467170806371,0.21183207086382,1.7642271844397,0.98931751764888,0,0.180938774784468,0,0,0.582961673259701,0.18542530201051,3.41741761595705,0.206386867963223,0.555583582109135,0.941842285023455,1.6403307326523,3.20289442489132,0.679913719975421,0.69975726161829,0.276399947608848,0,0,0,0,0.209088296014469,0.218362563746178,0,0.165306911450672,0.523511883968059,0.648074866458964,0,0,0,0.165458490457098,0.194451188344048,0,0,0.117357238645754,0,0,0,0,0.948033361884535,0.202725215290164,1.02710957164827,0.909445760844565,0.895133478337407,1.78813219303138,1.80293174279953,0.886137163047463,1.71642964911851,2.59103142626999,1.41156659191577,1.55932609183604,1.05833025804362,2.68816875017609,0,0,0,0,0,0.375364950902364,0.183151624267265,0.428736758158132,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,0,0,0,0.183843508450014,0,0,0,0,0.25347929989024,0,0,0.0640251524048693,0.0574354689556133,0.952587382566147,0.115884325944855,0,0.412085900803307,0,0,0,0,0.145346416632329,0,0,0,0,0,0,0,0,0,0,0.192906610981141,0.249810577937946,0,0.429742108096597,0.191288332068843,0.441182838239031,0.463735671240843 | |||
|short_description=p1@uc008qvf.1 | |||
}} |
Revision as of 01:07, 14 September 2013
Short description: | p1@uc008qvf.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_uc008qvf.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:187 |
Association with transcript: | -11bp_to_uc008qvf.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 2.38e-17 | 25 |
megakaryocyte progenitor cell | 1.27e-15 | 6 |
megakaryocyte | 1.27e-15 | 6 |
hematopoietic cell | 8.77e-15 | 32 |
hematopoietic oligopotent progenitor cell | 8.77e-15 | 32 |
hematopoietic stem cell | 8.77e-15 | 32 |
hematopoietic multipotent progenitor cell | 8.77e-15 | 32 |
megakaryocyte-erythroid progenitor cell | 3.68e-10 | 9 |
lymphoid lineage restricted progenitor cell | 9.56e-10 | 12 |
connective tissue cell | 3.05e-09 | 46 |
mesenchymal cell | 3.05e-09 | 46 |
myeloid cell | 5.72e-09 | 16 |
lymphocyte | 6.50e-09 | 13 |
common lymphoid progenitor | 6.50e-09 | 13 |
myeloid lineage restricted progenitor cell | 7.09e-09 | 13 |
leukocyte | 2.43e-08 | 17 |
nongranular leukocyte | 2.43e-08 | 17 |
CD9-positive, CD41-positive megakaryocyte cell | 3.28e-08 | 3 |
Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell | 3.28e-08 | 3 |
Kit-positive megakaryocyte progenitor cell | 3.28e-08 | 3 |
T cell | 4.15e-08 | 11 |
pro-T cell | 4.15e-08 | 11 |
motile cell | 2.21e-07 | 54 |
common myeloid progenitor | 2.44e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.62e-27 | 48 |
immune system | 2.62e-27 | 48 |
hematopoietic system | 6.11e-22 | 45 |
blood island | 6.11e-22 | 45 |
hemopoietic organ | 1.25e-13 | 29 |
immune organ | 1.25e-13 | 29 |
mixed endoderm/mesoderm-derived structure | 1.54e-12 | 35 |
thymus | 1.37e-10 | 23 |
neck | 1.37e-10 | 23 |
respiratory system epithelium | 1.37e-10 | 23 |
hemolymphoid system gland | 1.37e-10 | 23 |
pharyngeal epithelium | 1.37e-10 | 23 |
thymic region | 1.37e-10 | 23 |
pharyngeal gland | 1.37e-10 | 23 |
entire pharyngeal arch endoderm | 1.37e-10 | 23 |
thymus primordium | 1.37e-10 | 23 |
early pharyngeal endoderm | 1.37e-10 | 23 |
pharynx | 4.69e-10 | 24 |
gland of gut | 4.69e-10 | 24 |
upper respiratory tract | 4.69e-10 | 24 |
chordate pharynx | 4.69e-10 | 24 |
pharyngeal arch system | 4.69e-10 | 24 |
pharyngeal region of foregut | 4.69e-10 | 24 |
lateral plate mesoderm | 6.02e-10 | 87 |
connective tissue | 3.05e-09 | 46 |
bone marrow | 5.72e-09 | 16 |
segment of respiratory tract | 1.07e-08 | 27 |
lymphoid system | 1.75e-08 | 3 |
bone element | 1.01e-07 | 22 |
skeletal element | 1.01e-07 | 22 |
skeletal system | 1.01e-07 | 22 |
respiratory tract | 3.51e-07 | 41 |
respiratory system | 5.99e-07 | 42 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.