FFCP PHASE1:Mm9::chr1:187255840..187255858,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=195|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:187255840..187255858,+|id=chr1:187255840..187255858,+|ontology_enrichment_celltype=CL:0000239!6.05e-11!6;CL:0000677!6.05e-11!6;CL:0000212!6.05e-11!6;CL:0000584!6.05e-11!6;CL:0002563!8.25e-10!9;CL:0002251!8.25e-10!9;CL:0000075!2.51e-09!7;CL:0000473!4.47e-08!3;CL:0000627!4.47e-08!3;CL:0000682!4.47e-08!3|ontology_enrichment_celltype_v019_2=CL:0000682,2.66e-10,3;CL:0000239,1.06e-09,6;CL:0000677,1.06e-09,6;CL:0000584,1.06e-09,6;CL:0000075,2.52e-08,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!3.99e-30!43;UBERON:0000344!6.52e-23!15;UBERON:0005409!1.17e-22!59;UBERON:0001242!1.50e-18!13;UBERON:0000060!1.50e-18!13;UBERON:0001262!1.50e-18!13;UBERON:0004786!1.50e-18!13;UBERON:0004923!2.47e-13!24;UBERON:0001007!4.12e-10!128;UBERON:0001555!4.12e-10!128;UBERON:0007026!4.12e-10!128;UBERON:0004119!7.34e-10!130;UBERON:0000925!7.34e-10!130;UBERON:0006595!7.34e-10!130;UBERON:0003350!8.25e-10!9;UBERON:0004808!8.25e-10!9;UBERON:0001277!8.25e-10!9;UBERON:0000331!1.41e-08!3;UBERON:0002116!1.41e-08!3;UBERON:0001204!1.41e-08!3;UBERON:0001168!1.41e-08!3;UBERON:0004921!2.07e-08!126;UBERON:0004185!2.07e-08!126;UBERON:0000485!6.71e-08!11|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.04e-41,31;UBERON:0005409,2.11e-29,47;UBERON:0000344,8.79e-22,15;UBERON:0001242,1.98e-16,13;UBERON:0001262,1.98e-16,13;UBERON:0004786,1.98e-16,13;UBERON:0002108,2.13e-14,4;UBERON:0004923,5.77e-13,24;UBERON:0001007,5.15e-12,116;UBERON:0001555,5.15e-12,116;UBERON:0007026,5.15e-12,116;UBERON:0004119,9.71e-12,118;UBERON:0000925,9.71e-12,118;UBERON:0006595,9.71e-12,118;UBERON:0000331,5.68e-11,3;UBERON:0002116,5.68e-11,3;UBERON:0001204,5.68e-11,3;UBERON:0001168,5.68e-11,3;UBERON:0004921,8.49e-10,114;UBERON:0001962,1.21e-07,2;UBERON:0001961,1.21e-07,2;UBERON:0001744,1.21e-07,2;UBERON:0001155,1.53e-07,2;UBERON:0000059,1.53e-07,2|phase1_expression=0,6.2815573375085,4.09499315450582,5.74682001482977,3.50627010962443,0,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07990149631429,2.75291137280604,1.72269589234506,1.7230479846363,2.15471232685889,6.84084310042946,2.77233142735924,1.99557459589774,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135005938331691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72783522436244,0,0,1.02182822083437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.8601015832223,7.93351699990633,0,0,0,0,0.22237804384487,0.570676878337677,7.11793592316767,2.30578536613615,1.00534083520108,1.1937388322469,1.75467678407208,10.7858329038507,5.18731319699266,6.96994456390285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.57850175237612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.292192521702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0.238436189947321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr1:187255840..187255858,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=195 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:187255840..187255858,+ | |||
|id=chr1:187255840..187255858,+ | |||
|ontology_enrichment_celltype=CL:0000239!6.05e-11!6;CL:0000677!6.05e-11!6;CL:0000212!6.05e-11!6;CL:0000584!6.05e-11!6;CL:0002563!8.25e-10!9;CL:0002251!8.25e-10!9;CL:0000075!2.51e-09!7;CL:0000473!4.47e-08!3;CL:0000627!4.47e-08!3;CL:0000682!4.47e-08!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,2.66e-10,3;CL:0000239,1.06e-09,6;CL:0000677,1.06e-09,6;CL:0000584,1.06e-09,6;CL:0000075,2.52e-08,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!3.99e-30!43;UBERON:0000344!6.52e-23!15;UBERON:0005409!1.17e-22!59;UBERON:0001242!1.50e-18!13;UBERON:0000060!1.50e-18!13;UBERON:0001262!1.50e-18!13;UBERON:0004786!1.50e-18!13;UBERON:0004923!2.47e-13!24;UBERON:0001007!4.12e-10!128;UBERON:0001555!4.12e-10!128;UBERON:0007026!4.12e-10!128;UBERON:0004119!7.34e-10!130;UBERON:0000925!7.34e-10!130;UBERON:0006595!7.34e-10!130;UBERON:0003350!8.25e-10!9;UBERON:0004808!8.25e-10!9;UBERON:0001277!8.25e-10!9;UBERON:0000331!1.41e-08!3;UBERON:0002116!1.41e-08!3;UBERON:0001204!1.41e-08!3;UBERON:0001168!1.41e-08!3;UBERON:0004921!2.07e-08!126;UBERON:0004185!2.07e-08!126;UBERON:0000485!6.71e-08!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.04e-41,31;UBERON:0005409,2.11e-29,47;UBERON:0000344,8.79e-22,15;UBERON:0001242,1.98e-16,13;UBERON:0001262,1.98e-16,13;UBERON:0004786,1.98e-16,13;UBERON:0002108,2.13e-14,4;UBERON:0004923,5.77e-13,24;UBERON:0001007,5.15e-12,116;UBERON:0001555,5.15e-12,116;UBERON:0007026,5.15e-12,116;UBERON:0004119,9.71e-12,118;UBERON:0000925,9.71e-12,118;UBERON:0006595,9.71e-12,118;UBERON:0000331,5.68e-11,3;UBERON:0002116,5.68e-11,3;UBERON:0001204,5.68e-11,3;UBERON:0001168,5.68e-11,3;UBERON:0004921,8.49e-10,114;UBERON:0001962,1.21e-07,2;UBERON:0001961,1.21e-07,2;UBERON:0001744,1.21e-07,2;UBERON:0001155,1.53e-07,2;UBERON:0000059,1.53e-07,2 | |||
|phase1_expression=0,6.2815573375085,4.09499315450582,5.74682001482977,3.50627010962443,0,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07990149631429,2.75291137280604,1.72269589234506,1.7230479846363,2.15471232685889,6.84084310042946,2.77233142735924,1.99557459589774,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135005938331691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72783522436244,0,0,1.02182822083437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.8601015832223,7.93351699990633,0,0,0,0,0.22237804384487,0.570676878337677,7.11793592316767,2.30578536613615,1.00534083520108,1.1937388322469,1.75467678407208,10.7858329038507,5.18731319699266,6.96994456390285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.57850175237612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.292192521702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0.238436189947321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:187255840..187255858,+ | |||
}} |
Revision as of 20:01, 13 September 2013
Short description: | p@chr1:187255840..187255858, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:187255840..187255858, + |
Coexpression cluster: | MCL_coexpression_mm9:195 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 2.66e-10 | 3 |
brush border epithelial cell | 1.06e-09 | 6 |
gut absorptive cell | 1.06e-09 | 6 |
enterocyte | 1.06e-09 | 6 |
columnar/cuboidal epithelial cell | 2.52e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.04e-41 | 31 |
gastrointestinal system | 2.11e-29 | 47 |
mucosa | 8.79e-22 | 15 |
intestinal mucosa | 1.98e-16 | 13 |
wall of intestine | 1.98e-16 | 13 |
gastrointestinal system mucosa | 1.98e-16 | 13 |
small intestine | 2.13e-14 | 4 |
organ component layer | 5.77e-13 | 24 |
digestive system | 5.15e-12 | 116 |
digestive tract | 5.15e-12 | 116 |
primitive gut | 5.15e-12 | 116 |
endoderm-derived structure | 9.71e-12 | 118 |
endoderm | 9.71e-12 | 118 |
presumptive endoderm | 9.71e-12 | 118 |
ileal mucosa | 5.68e-11 | 3 |
ileum | 5.68e-11 | 3 |
mucosa of small intestine | 5.68e-11 | 3 |
wall of small intestine | 5.68e-11 | 3 |
subdivision of digestive tract | 8.49e-10 | 114 |
gut-associated lymphoid tissue | 1.21e-07 | 2 |
mucosa-associated lymphoid tissue | 1.21e-07 | 2 |
lymphoid tissue | 1.21e-07 | 2 |
colon | 1.53e-07 | 2 |
large intestine | 1.53e-07 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.