FFCP PHASE1:Mm9::chr10:43723638..43723704,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=345|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr10:43723638..43723704,-|id=chr10:43723638..43723704,-|ontology_enrichment_celltype=CL:0000063!1.05e-11!66;CL:0000066!1.61e-08!25;CL:0000223!1.88e-08!20;CL:0002076!6.16e-07!15|ontology_enrichment_celltype_v019_2=CL:0000066,1.15e-09,25;CL:0000223,2.24e-09,20;CL:0002076,1.16e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001007!4.01e-17!128;UBERON:0001555!4.01e-17!128;UBERON:0007026!4.01e-17!128;UBERON:0004119!1.03e-16!130;UBERON:0000925!1.03e-16!130;UBERON:0006595!1.03e-16!130;UBERON:0004921!3.21e-16!126;UBERON:0004185!3.21e-16!126;UBERON:0002405!2.51e-11!70;UBERON:0003929!1.34e-09!55;UBERON:0000344!4.24e-09!15;UBERON:0004923!6.34e-09!24;UBERON:0005409!7.00e-09!59;UBERON:0005911!7.26e-09!69;UBERON:0002193!1.89e-08!48;UBERON:0001242!2.81e-08!13;UBERON:0000060!2.81e-08!13;UBERON:0001262!2.81e-08!13;UBERON:0004786!2.81e-08!13;UBERON:0000160!1.28e-07!43;UBERON:0000490!2.96e-07!66;UBERON:0002390!3.26e-07!45;UBERON:0003061!3.26e-07!45;UBERON:0005057!4.64e-07!51;UBERON:0000077!9.84e-07!97|ontology_enrichment_uberon_v019_2=UBERON:0001007,5.35e-20,116;UBERON:0001555,5.35e-20,116;UBERON:0007026,5.35e-20,116;UBERON:0004119,1.76e-19,118;UBERON:0000925,1.76e-19,118;UBERON:0006595,1.76e-19,118;UBERON:0004921,5.91e-19,114;UBERON:0005409,2.22e-12,47;UBERON:0000160,4.84e-12,31;UBERON:0000344,4.14e-10,15;UBERON:0003929,8.98e-10,55;UBERON:0004923,1.63e-09,24;UBERON:0001242,3.54e-09,13;UBERON:0001262,3.54e-09,13;UBERON:0004786,3.54e-09,13;UBERON:0005911,4.06e-09,69;UBERON:0002193,3.19e-08,48;UBERON:0002405,3.19e-08,48;UBERON:0000490,5.35e-08,66;UBERON:0001041,2.95e-07,80;UBERON:0002390,6.67e-07,45;UBERON:0003061,6.67e-07,45|phase1_expression=0.320297694209588,58.976843891052,48.2299193752908,41.4375969490357,47.0841986149566,18.6345991822198,21.4923629347884,29.569241068121,15.627548158835,18.4910975794375,0.513653904676515,1.11681022593471,30.6449306576858,34.705899760342,5.99597571268193,6.47920855647443,2.09868563438444,29.180250295637,30.7136331276855,26.3121584114779,3.23164502574065,0.794327609607082,0.261199789138935,12.6394014006791,10.0940083669555,43.6416292727415,31.8763877157715,25.4256054569349,30.2137236935634,34.7801579068704,15.299405235216,0,0,0,8.66554859253824,5.31950865147176,7.55426618170766,7.11503772252743,8.5946887897618,6.28228492768558,9.99993529652724,4.78131839470912,11.1667381197165,0.125896817975577,0.101376931219515,0,3.12956537739216,0,0.878744730937887,2.3331587888914,2.2397827460058,1.43752564364972,23.1539996359676,42.7963663786693,26.5514101322547,1.02903774414379,0,1.03134418455488,0,0,0.633831403506179,0.338844532069132,0.889294796111139,4.49949858640699,5.93319817540185,7.104801149461,1.49800055259202,1.92109152660777,0,0.135005938331691,0,0,0,0,0,0,0,0.510749352340751,0.153606533256243,0,0,0,0.279182999001381,0.56276261003168,0.15279824777681,0,0,0,0.681535739998656,0.302286240427142,5.2175607966302,5.16254326188832,4.0798280022465,7.01614149129162,14.2950811838487,16.5769948226014,7.16266542671934,8.52151612890289,5.45550609666024,8.48014978824817,0,14.115912515575,10.1922095882658,7.11066703153331,3.46385665617943,2.28023878927589,2.02209778005913,11.9893073705013,37.8049310124871,1.7813056687779,0.173485326766136,0.304465478312141,0,0.753613202763113,0.23517741427141,0.753999547978053,0.741584903203122,5.06097749219691,8.84610551949874,1.94120219936891,5.07935492458905,5.33362778448744,31.6865994070808,0.878342391034642,0.41889341362691,31.4212177906567,1.91704199209472,1.19980546198682,2.54140454146129,0.299581278809645,0.915001205637253,0.125654352112864,0.173824320192276,0.255715457330331,0.20778804455956,0.648965052271031,0.712875546952214,4.97627882440372,3.79084137650512,29.0409761123334,0,0,0.180062129805349,0,0.408218994907967,0.2562274405697,0.468508622798644,6.20888089773638,0.431135985865684,0.378212160335639,0,1.31517439456545,0,0.348252166522167,0.61734640922383,0.199034266818493,0.702213187313235,0.257347907114715,0.852490498186778,0,0,0,0,0.196764231747404,0,0.232533944750408,0,0.233530684734339,0.16455984991348,0.985004784474571,1.78351381000883,1.60819986167866,3.73235195994786,4.42881181909227,1.05144974282064,0,24.4509899408011,18.5115396664481,0,0,0.38660238396628,0.201683524623343,2.44615848229357,5.70676878337677,15.1849299694244,6.91735609840846,8.54539709920916,12.1363447945102,10.1381325301942,25.1669434423182,17.9394581395996,17.5244320463843,0.189667900953082,0.342745537829186,0,0.407302655690628,1.16371492300575,0.98190147846446,2.02356918797623,2.50937251565324,2.35498091762062,1.85095745882701,8.59712618552732,0.500535317148282,0.196558995113203,0.449724224769707,1.21716072833102,0.241177159752417,1.52775511068852,2.01387296215567,3.08056930872567,1.64736847912849,7.18841032636773,9.30352369171258,9.04909252032226,10.3557339958316,10.4050499842709,9.64887042726734,9.9766722689966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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=345 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr10:43723638..43723704,- | |||
|id=chr10:43723638..43723704,- | |||
|ontology_enrichment_celltype=CL:0000063!1.05e-11!66;CL:0000066!1.61e-08!25;CL:0000223!1.88e-08!20;CL:0002076!6.16e-07!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.15e-09,25;CL:0000223,2.24e-09,20;CL:0002076,1.16e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!4.01e-17!128;UBERON:0001555!4.01e-17!128;UBERON:0007026!4.01e-17!128;UBERON:0004119!1.03e-16!130;UBERON:0000925!1.03e-16!130;UBERON:0006595!1.03e-16!130;UBERON:0004921!3.21e-16!126;UBERON:0004185!3.21e-16!126;UBERON:0002405!2.51e-11!70;UBERON:0003929!1.34e-09!55;UBERON:0000344!4.24e-09!15;UBERON:0004923!6.34e-09!24;UBERON:0005409!7.00e-09!59;UBERON:0005911!7.26e-09!69;UBERON:0002193!1.89e-08!48;UBERON:0001242!2.81e-08!13;UBERON:0000060!2.81e-08!13;UBERON:0001262!2.81e-08!13;UBERON:0004786!2.81e-08!13;UBERON:0000160!1.28e-07!43;UBERON:0000490!2.96e-07!66;UBERON:0002390!3.26e-07!45;UBERON:0003061!3.26e-07!45;UBERON:0005057!4.64e-07!51;UBERON:0000077!9.84e-07!97 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,5.35e-20,116;UBERON:0001555,5.35e-20,116;UBERON:0007026,5.35e-20,116;UBERON:0004119,1.76e-19,118;UBERON:0000925,1.76e-19,118;UBERON:0006595,1.76e-19,118;UBERON:0004921,5.91e-19,114;UBERON:0005409,2.22e-12,47;UBERON:0000160,4.84e-12,31;UBERON:0000344,4.14e-10,15;UBERON:0003929,8.98e-10,55;UBERON:0004923,1.63e-09,24;UBERON:0001242,3.54e-09,13;UBERON:0001262,3.54e-09,13;UBERON:0004786,3.54e-09,13;UBERON:0005911,4.06e-09,69;UBERON:0002193,3.19e-08,48;UBERON:0002405,3.19e-08,48;UBERON:0000490,5.35e-08,66;UBERON:0001041,2.95e-07,80;UBERON:0002390,6.67e-07,45;UBERON:0003061,6.67e-07,45 | |||
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| |||
|short_description=p@chr10:43723638..43723704,- | |||
}} | |||
Revision as of 16:47, 12 September 2013
| Short description: | p@chr10:43723638..43723704, - |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_at_chr10:43723638..43723704, - |
| Coexpression cluster: | MCL_coexpression_mm9:345 |
| Association with transcript: | NA |
| EntrezGene: | NA |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 1.15e-09 | 25 |
| endodermal cell | 2.24e-09 | 20 |
| endo-epithelial cell | 1.16e-07 | 15 |
| Ontology term | p-value | n |
|---|---|---|
| digestive system | 5.35e-20 | 116 |
| digestive tract | 5.35e-20 | 116 |
| primitive gut | 5.35e-20 | 116 |
| endoderm-derived structure | 1.76e-19 | 118 |
| endoderm | 1.76e-19 | 118 |
| presumptive endoderm | 1.76e-19 | 118 |
| subdivision of digestive tract | 5.91e-19 | 114 |
| gastrointestinal system | 2.22e-12 | 47 |
| intestine | 4.84e-12 | 31 |
| mucosa | 4.14e-10 | 15 |
| gut epithelium | 8.98e-10 | 55 |
| organ component layer | 1.63e-09 | 24 |
| intestinal mucosa | 3.54e-09 | 13 |
| wall of intestine | 3.54e-09 | 13 |
| gastrointestinal system mucosa | 3.54e-09 | 13 |
| endo-epithelium | 4.06e-09 | 69 |
| hemolymphoid system | 3.19e-08 | 48 |
| immune system | 3.19e-08 | 48 |
| unilaminar epithelium | 5.35e-08 | 66 |
| foregut | 2.95e-07 | 80 |
| hematopoietic system | 6.67e-07 | 45 |
| blood island | 6.67e-07 | 45 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
