FFCP PHASE1:Mm9::chr16:90284657..90284743,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=224432|HGNC=|MCL_coexpression_id=3067|UniProt=Q6PFF0,Q7TSH6,Q8BXA9|association_with_transcript=0bp_to_ENSMUST00000039280,NM_178923,uc007zwb.1,uc007zwc.1,uc007zwd.1,uc007zwe.1,uc007zwg.1_5end|description=CAGE_peak_1_at_Scaf4_5end|id=chr16:90284657..90284743,-|ontology_enrichment_celltype=CL:0000791!3.93e-07!9;CL:0000789!3.93e-07!9;CL:0002420!3.93e-07!9;CL:0002419!3.93e-07!9;CL:0000790!3.93e-07!9;CL:0002031!6.59e-07!25|ontology_enrichment_celltype_v019_2=CL:0000791,3.93e-07,9;CL:0000789,3.93e-07,9;CL:0002420,3.93e-07,9;CL:0002419,3.93e-07,9;CL:0000790,3.93e-07,9;CL:0002031,6.59e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!1.53e-14!29;UBERON:0002370!1.50e-12!23;UBERON:0000974!1.50e-12!23;UBERON:0004807!1.50e-12!23;UBERON:0005058!1.50e-12!23;UBERON:0003351!1.50e-12!23;UBERON:0009113!1.50e-12!23;UBERON:0003295!1.50e-12!23;UBERON:0009722!1.50e-12!23;UBERON:0005562!1.50e-12!23;UBERON:0007690!1.50e-12!23;UBERON:0003408!1.82e-12!24;UBERON:0006562!1.41e-11!24;UBERON:0001557!1.41e-11!24;UBERON:0001042!1.41e-11!24;UBERON:0008814!1.41e-11!24;UBERON:0009145!1.41e-11!24;UBERON:0005057!3.32e-11!51;UBERON:0005911!4.12e-10!69;UBERON:0002390!1.21e-09!45;UBERON:0003061!1.21e-09!45;UBERON:0001004!6.83e-09!42;UBERON:0002193!7.61e-09!48;UBERON:0000065!7.95e-09!41;UBERON:0003929!9.05e-09!55;UBERON:0004921!1.53e-08!126;UBERON:0004185!1.53e-08!126;UBERON:0004119!2.98e-08!130;UBERON:0000925!2.98e-08!130;UBERON:0006595!2.98e-08!130;UBERON:0002405!3.57e-08!70;UBERON:0000072!5.29e-08!27;UBERON:0001007!8.53e-08!128;UBERON:0001555!8.53e-08!128;UBERON:0007026!8.53e-08!128;UBERON:0001041!2.19e-07!92;UBERON:0000077!2.21e-07!97|ontology_enrichment_uberon_v019_2=UBERON:0004177,1.53e-14,29;UBERON:0005057,1.53e-14,29;UBERON:0000077,8.00e-13,35;UBERON:0002370,1.50e-12,23;UBERON:0000974,1.50e-12,23;UBERON:0004807,1.50e-12,23;UBERON:0005058,1.50e-12,23;UBERON:0003351,1.50e-12,23;UBERON:0009113,1.50e-12,23;UBERON:0003295,1.50e-12,23;UBERON:0009722,1.50e-12,23;UBERON:0005562,1.50e-12,23;UBERON:0007690,1.50e-12,23;UBERON:0003408,1.82e-12,24;UBERON:0006562,1.41e-11,24;UBERON:0001557,1.41e-11,24;UBERON:0001042,1.41e-11,24;UBERON:0008814,1.41e-11,24;UBERON:0009145,1.41e-11,24;UBERON:0005911,4.12e-10,69;UBERON:0004921,5.57e-10,114;UBERON:0002390,1.21e-09,45;UBERON:0003061,1.21e-09,45;UBERON:0004119,1.30e-09,118;UBERON:0000925,1.30e-09,118;UBERON:0006595,1.30e-09,118;UBERON:0001007,4.04e-09,116;UBERON:0001555,4.04e-09,116;UBERON:0007026,4.04e-09,116;UBERON:0001041,4.22e-09,80;UBERON:0001004,6.83e-09,42;UBERON:0002193,7.61e-09,48;UBERON:0002405,7.61e-09,48;UBERON:0000065,7.95e-09,41;UBERON:0003929,9.05e-09,55;UBERON:0000072,5.29e-08,27;UBERON:0007811,5.91e-07,36;UBERON:0000153,8.60e-07,43|phase1_expression=21.1396478178328,41.1790981014446,40.4949323056687,54.7460222465362,63.6137577031861,47.0061961353291,37.1444098546886,65.4655249848792,146.98342592634,169.228652530801,82.1846247482424,99.2365657901985,69.3362956221383,71.7721503859969,53.297561890506,46.1643609648803,46.8706458345858,61.041928996819,60.6045796537365,64.0828374215026,39.8002597907007,44.4823461379966,30.2991755401165,21.5989770771099,21.564472420314,36.1766137392463,32.7379117080897,26.9339040857361,21.852693237483,32.5118867390311,24.1686256614282,53.9776072440687,71.3475153598101,63.3926724061755,27.7297554961224,22.607911768755,33.8921131395533,46.0384793810599,28.9094077473806,32.9819958703493,57.6466858270394,60.1080026763432,40.7828696546169,11.330713617802,14.2941473019516,12.4811791469943,23.4717403304412,15.2617609466313,17.1355222532888,14.9711022287198,17.358316281545,11.5002051491977,50.5025644233786,94.2970784614748,110.910953717013,23.9251275513431,19.1977404758967,24.7522604293172,28.3243045203437,13.7537654610729,20.2826049121977,16.6033820713875,23.1216646988896,35.0960889739746,33.6214563272771,27.7087244828979,25.4660093940644,19.2109152660777,40.0241903510724,32.6714370762691,36.3862183137891,12.8542942981712,16.7860091123226,36.3797673668413,33.8334512694374,30.3342199581307,18.7196997698961,19.7915374032041,19.2008166570304,24.3989632300859,18.9379422256988,19.7947080811569,14.7966989470732,14.6318278608237,17.8773949898868,25.9273155216828,18.2235751422852,18.0807462450542,26.5798938599476,27.8103341192971,33.3344162006929,17.2084775396277,39.4383373550495,22.6675340487883,38.3368086294125,35.8421509677868,28.2293284464821,20.1107780642108,12.9893002301434,12.3668851078619,21.8307300653855,41.0644727725817,81.5376767061266,92.4386714099331,12.7729714196616,16.7217511213565,12.6381111253696,34.0267961562799,213.882691892564,31.0244070645484,32.2682707785013,25.2706346999077,33.9004780966406,24.7185130506301,35.6293782621186,23.625319169979,40.5399747084373,50.8989736358089,46.8843592533433,30.5739346400603,42.8432545813163,39.7597707570882,46.5979403045305,33.9625724533395,20.9446706813455,43.1722423302519,37.7417642193649,20.3966928537759,29.8615033621702,29.8083372415597,32.9400434029411,41.4659361972453,32.8527965163402,24.8043993610421,21.8177446787538,24.8229132493669,33.3014719790534,33.3410681235049,16.6797020566225,36.8273247801329,36.1734831436316,22.9902104433473,35.1121153120431,34.9635177378859,40.6177899933427,34.8469319174791,31.3900777275092,25.3529303324235,40.5267826713743,44.8181409997732,36.7737849502653,28.0570537507296,33.6437171562973,44.5762773148373,37.0407845534298,34.4329281595993,19.6619692447706,22.6466158260949,24.7222244474166,39.1467710092099,30.0193356775803,25.0286265430811,39.2996261071449,37.1884398002593,27.9223474326155,31.1595485965547,30.8514411609562,32.2272344933388,24.6839774870221,18.5509234409378,25.4556061973987,18.1287984407412,23.2723122208514,22.8150911892632,37.0110309472864,35.3991866584738,55.5103555412781,65.0548393992319,32.2065258308203,34.3710274353449,53.9954662939571,51.0259317297057,45.5874989881984,39.9473814836374,40.3349702312835,34.7514794467663,28.4008785944305,29.047644918008,36.0683561170372,50.3338868846364,41.0662294761919,42.6162324764346,36.0369011810855,38.3875002368689,55.2267904798094,36.4535876843113,40.7300223052014,38.5045651197849,34.5271492698445,27.1602672282468,26.5327850051923,22.4582838337677,31.1275258441506,66.0706618635732,53.4640466707912,59.1387355572165,59.8437358096084,50.4060263882551,38.4485036189944,44.3052051674248,45.3978634970099,28.0052641451843,99.2000625038746,26.4220072844637,28.7074659265396,27.025939940341,35.7000852908605,30.3939418458921,43.6017528793187,32.9715056480644,42.5338588513688,39.720350071394,38.9585812158913,52.5969648367301,40.7054625915084,44.8807390072937,39.4087860265477,38.3133913092381,40.9798755449742,41.1296919936502,38.3360659742288,38.7659476998451,16.5870412333199,32.0904353453039,35.8987919303896,40.2867649604909,24.0825884981688,20.1604100938589,14.7541450839008,20.7026160307586,29.0267561862956,29.6733445665445,33.3906266485838,36.0842884908354,40.5493586829957,49.8214694188345,32.7896668356664,26.0107713541068,26.0889933444706,47.2342335140056,35.6269613872754,32.5860054711077,37.6268876106761,42.3973216039416,45.1333470355874,24.7636248878081,31.1393263673694,25.2730806872903,33.9597176812889,32.8955608300002,35.1462478708781,31.9909681940205,26.7373033788541,30.6555655197742,35.8423269154996,37.1287955693473,25.1925308257803,26.6490419166339,29.8818559538163,23.7914108885067,34.7586857938856,26.9336914579127,30.7706668525966,27.4018454203139,45.5263113643598,47.8740480152234,25.8018225724305,97.7775479942977,51.0227588359062,52.1103671379267,40.4672246170633,46.1235928283622,33.8117770490627,27.6283699995659,73.1327369814809,36.3240887615272,53.336023882477,48.0339565361962,67.9370311773495,54.6779833963589,30.596117398894,28.8299991786735,30.8185941583865,37.2321541025894,38.9093272104796,43.3070464980188,35.7497678120162,40.5631294268069,33.6278348169114,28.4563770871972,31.1603528084516,28.2696417342752,35.7737326285348,40.3870553506502,73.2800820289447,31.9965408534115,25.9769830017643,27.8065199331988,23.3779280494693,28.21567295696,31.4517399570621,29.5563953595767,33.9744275939303,49.2831606485052,46.0848010012585,88.7991248965181,33.8551109534574,40.4681171229419,53.1376165979182,76.6234257456821,66.5582538517237,61.660265603744,69.5617672992259,57.1470106706516,74.6064637152448,80.6609481094724,89.2714187576132,78.1240154119475,82.5150929401877,26.7541852665949,45.7291063950573,43.8700758820336,46.6719233492138,33.0354205795046,34.1582105321151,34.2493537379786,35.1564141689668,33.103758866334,32.1908550291728,23.476587061866,30.363462212288,26.2935368985842,23.2928056722018,26.4387864086395,27.0009000092722,25.6683085837806,19.0319811773366,31.0656187051092,34.3536120503625,50.6761589219309,32.0979178817772,43.5161023552246,39.6168877366887,51.476182366004,47.5607997495457,49.4484137373346,61.2955690320367,53.8245061056889,52.4702150772796,50.7404858328545,50.5664140337365,51.6042728383246,56.0570177006785,54.7737744975535,41.1389357104237,49.1918512182448,46.1536208899703,46.2204609222008,34.629794490927,36.3825402626642,41.0110246709392,41.4237287402136,47.4311277293266,43.5765230642134,40.7929379506283,33.6729230640439,36.5313066245368,55.5530848941161,46.979467177173,42.4554319038679,45.0154147486658,45.551431308674,43.4039874707568,32.9749962878089,40.0023050441648,39.3214028908386,34.240611440323,26.4709702943419,25.9691975894872|short_description=p1@Scaf4}} | ||
|EntrezGene=224432 | |||
|HGNC= | |||
|MCL_coexpression_id=3067 | |||
|UniProt=Q6PFF0,Q7TSH6,Q8BXA9 | |||
|association_with_transcript=0bp_to_ENSMUST00000039280,NM_178923,uc007zwb.1,uc007zwc.1,uc007zwd.1,uc007zwe.1,uc007zwg.1_5end | |||
|description=CAGE_peak_1_at_Scaf4_5end | |||
|id=chr16:90284657..90284743,- | |||
|ontology_enrichment_celltype=CL:0000791!3.93e-07!9;CL:0000789!3.93e-07!9;CL:0002420!3.93e-07!9;CL:0002419!3.93e-07!9;CL:0000790!3.93e-07!9;CL:0002031!6.59e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.93e-07,9;CL:0000789,3.93e-07,9;CL:0002420,3.93e-07,9;CL:0002419,3.93e-07,9;CL:0000790,3.93e-07,9;CL:0002031,6.59e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.53e-14!29;UBERON:0002370!1.50e-12!23;UBERON:0000974!1.50e-12!23;UBERON:0004807!1.50e-12!23;UBERON:0005058!1.50e-12!23;UBERON:0003351!1.50e-12!23;UBERON:0009113!1.50e-12!23;UBERON:0003295!1.50e-12!23;UBERON:0009722!1.50e-12!23;UBERON:0005562!1.50e-12!23;UBERON:0007690!1.50e-12!23;UBERON:0003408!1.82e-12!24;UBERON:0006562!1.41e-11!24;UBERON:0001557!1.41e-11!24;UBERON:0001042!1.41e-11!24;UBERON:0008814!1.41e-11!24;UBERON:0009145!1.41e-11!24;UBERON:0005057!3.32e-11!51;UBERON:0005911!4.12e-10!69;UBERON:0002390!1.21e-09!45;UBERON:0003061!1.21e-09!45;UBERON:0001004!6.83e-09!42;UBERON:0002193!7.61e-09!48;UBERON:0000065!7.95e-09!41;UBERON:0003929!9.05e-09!55;UBERON:0004921!1.53e-08!126;UBERON:0004185!1.53e-08!126;UBERON:0004119!2.98e-08!130;UBERON:0000925!2.98e-08!130;UBERON:0006595!2.98e-08!130;UBERON:0002405!3.57e-08!70;UBERON:0000072!5.29e-08!27;UBERON:0001007!8.53e-08!128;UBERON:0001555!8.53e-08!128;UBERON:0007026!8.53e-08!128;UBERON:0001041!2.19e-07!92;UBERON:0000077!2.21e-07!97 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,1.53e-14,29;UBERON:0005057,1.53e-14,29;UBERON:0000077,8.00e-13,35;UBERON:0002370,1.50e-12,23;UBERON:0000974,1.50e-12,23;UBERON:0004807,1.50e-12,23;UBERON:0005058,1.50e-12,23;UBERON:0003351,1.50e-12,23;UBERON:0009113,1.50e-12,23;UBERON:0003295,1.50e-12,23;UBERON:0009722,1.50e-12,23;UBERON:0005562,1.50e-12,23;UBERON:0007690,1.50e-12,23;UBERON:0003408,1.82e-12,24;UBERON:0006562,1.41e-11,24;UBERON:0001557,1.41e-11,24;UBERON:0001042,1.41e-11,24;UBERON:0008814,1.41e-11,24;UBERON:0009145,1.41e-11,24;UBERON:0005911,4.12e-10,69;UBERON:0004921,5.57e-10,114;UBERON:0002390,1.21e-09,45;UBERON:0003061,1.21e-09,45;UBERON:0004119,1.30e-09,118;UBERON:0000925,1.30e-09,118;UBERON:0006595,1.30e-09,118;UBERON:0001007,4.04e-09,116;UBERON:0001555,4.04e-09,116;UBERON:0007026,4.04e-09,116;UBERON:0001041,4.22e-09,80;UBERON:0001004,6.83e-09,42;UBERON:0002193,7.61e-09,48;UBERON:0002405,7.61e-09,48;UBERON:0000065,7.95e-09,41;UBERON:0003929,9.05e-09,55;UBERON:0000072,5.29e-08,27;UBERON:0007811,5.91e-07,36;UBERON:0000153,8.60e-07,43 | |||
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| |||
|short_description=p1@Scaf4 | |||
}} |
Revision as of 13:15, 13 September 2013
Short description: | p1@Scaf4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Scaf4_5end |
Coexpression cluster: | MCL_coexpression_mm9:3067 |
Association with transcript: | 0bp_to_ENSMUST00000039280, NM_178923, uc007zwb.1, uc007zwc.1, uc007zwd.1, uc007zwe.1, uc007zwg.1_5end |
EntrezGene: | Scaf4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.93e-07 | 9 |
alpha-beta T cell | 3.93e-07 | 9 |
immature T cell | 3.93e-07 | 9 |
mature T cell | 3.93e-07 | 9 |
immature alpha-beta T cell | 3.93e-07 | 9 |
hematopoietic lineage restricted progenitor cell | 6.59e-07 | 25 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.