FFCP PHASE1:Mm9::chr7:56653449..56653462,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=200|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:56653449..56653462,+|id=chr7:56653449..56653462,+|ontology_enrichment_celltype=CL:0000181!9.21e-07!5;CL:0000417!9.21e-07!5;CL:0000668!9.21e-07!5;CL:0000412!9.21e-07!5;CL:0000182!9.21e-07!5|ontology_enrichment_celltype_v019_2=CL:0000182,2.06e-20,5;CL:0002092,3.52e-13,3;CL:0002540,3.52e-13,3;CL:0002476,1.83e-09,2;CL:0002320,1.91e-07,46;CL:0000134,1.91e-07,46|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!5.00e-18!22;UBERON:0007499!5.00e-18!22;UBERON:0006925!5.00e-18!22;UBERON:0009497!5.00e-18!22;UBERON:0000015!5.00e-18!22;UBERON:0002423!5.00e-18!22;UBERON:0006235!5.00e-18!22;UBERON:0008835!5.00e-18!22;UBERON:0003894!5.00e-18!22;UBERON:0004161!5.00e-18!22;UBERON:0008836!5.00e-18!22;UBERON:0009854!6.61e-17!23;UBERON:0009856!6.61e-17!23;UBERON:0002365!6.07e-15!25;UBERON:0002330!6.07e-15!25;UBERON:0002405!1.74e-11!70;UBERON:0005911!6.62e-10!69;UBERON:0003929!1.37e-09!55;UBERON:0000490!5.14e-08!66;UBERON:0005057!3.42e-07!51;UBERON:0005256!4.16e-07!47|ontology_enrichment_uberon_v019_2=UBERON:0002107,4.10e-34,22;UBERON:0007499,4.10e-34,22;UBERON:0006925,4.10e-34,22;UBERON:0009497,4.10e-34,22;UBERON:0000015,4.10e-34,22;UBERON:0002423,4.10e-34,22;UBERON:0006235,4.10e-34,22;UBERON:0008835,4.10e-34,22;UBERON:0003894,4.10e-34,22;UBERON:0004161,4.10e-34,22;UBERON:0008836,4.10e-34,22;UBERON:0009854,1.58e-32,23;UBERON:0009856,1.58e-32,23;UBERON:0002365,9.73e-30,25;UBERON:0002330,9.73e-30,25;UBERON:0005256,1.88e-15,45;UBERON:0003914,1.09e-14,47;UBERON:0005172,5.45e-14,49;UBERON:0005173,5.45e-14,49;UBERON:0002417,5.45e-14,49;UBERON:0000916,5.45e-14,49;UBERON:0003929,3.40e-12,55;UBERON:0002368,5.66e-11,60;UBERON:0003104,9.41e-11,61;UBERON:0009142,9.41e-11,61;UBERON:0002530,6.14e-10,65;UBERON:0000490,9.46e-10,66;UBERON:0009569,9.46e-10,66;UBERON:0005911,3.22e-09,69;UBERON:0000949,9.90e-09,72;UBERON:0005177,9.76e-08,79;UBERON:0001041,1.31e-07,80;UBERON:0002384,1.91e-07,46|phase1_expression=0,0.348975407639361,0.454999239389536,0,0,0.839396359559449,0.700837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0.639969691173627,0.68822784320151,0,0.430761996159075,0.215471232685889,0,0,0.221730510655305,0,0,0,0.288851619751275,0,0,0,0.7813353445238,0.523523743973798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.94944844504769,2.96659908770092,2.8419204597844,0.599200221036809,0,0.103689612308478,0,0,0.285650984403804,0,0,0,0,0,0.127687338085188,0,0.131886287730194,0,0,0,0,0,0,0,0,0,0.151143120213571,1.44932244350839,0.860423876981386,4.0798280022465,4.85732872474035,1.29955283489534,4.03224198387602,1.40444420131752,0,0,0,0,0,0,0,0,0,0,1.7127581957859,0,0.29688427812965,0,0,0,0,0,0,0,0,0,0,0.220841518460394,0,0,0,0.209446706813455,0.255457055208591,0.599075622529601,0,0.635351135365324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0.51469581422943,0.284163499395593,0,0,0,0,0,0,0.232533944750408,0.536546802799238,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.41131567717872,0,0.196558995113203,0,0.202860121388503,0.482354319504834,0.763877555344259,1.43848068725405,0.810676133875177,2.47105271869273,2.87536413054709,1.11642284300551,1.24815069245824,4.2938409251009,4.30553792452589,5.30687873499704,0.369506380333209,0,0,0,0,0,0,0,0.315270288212382,0,0.159454768657487,0.327726629431476,0.345369963731791,0.144649058581512,4.52373851817817,3.26343410291226,0,0,0,0,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0,0.283880170416537,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0.356497378384721,0.316036757935816,0,0,0,0,0,0,0,0,0,0.304464949114599,0,0,0,0.32977250588296,0,0.0603129249281559,0,0.164140899745061,0,0,0,0,0,0,0.136694227721025,0,0,0,0.276399947608848,0,0,0,0.108005340821801,0,0,0.134864346384821,0.247960367176008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0.179026695667481,0,0,0,0,0.15241361331,0.100826185136841,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03552062350364,0,0,0,0.243106717068294,0,0.183843508450014,0,0,0,0,0,0,0,0.0640251524048693,0.17230640686684,0,0.231768651889711,0,0,0,0,0,0.238436189947321,0.145346416632329,0.0941093804153306,0,0,0,0.135804113845862,0.561142271657738,0,0.0985044823755635,0,0.154936841185966,0,0,0,0.214871054048298,0.191288332068843,0.220591419119515,0|short_description=p@chr7:56653449..56653462,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=200 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:56653449..56653462,+ | |||
|id=chr7:56653449..56653462,+ | |||
|ontology_enrichment_celltype=CL:0000181!9.21e-07!5;CL:0000417!9.21e-07!5;CL:0000668!9.21e-07!5;CL:0000412!9.21e-07!5;CL:0000182!9.21e-07!5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.06e-20,5;CL:0002092,3.52e-13,3;CL:0002540,3.52e-13,3;CL:0002476,1.83e-09,2;CL:0002320,1.91e-07,46;CL:0000134,1.91e-07,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!5.00e-18!22;UBERON:0007499!5.00e-18!22;UBERON:0006925!5.00e-18!22;UBERON:0009497!5.00e-18!22;UBERON:0000015!5.00e-18!22;UBERON:0002423!5.00e-18!22;UBERON:0006235!5.00e-18!22;UBERON:0008835!5.00e-18!22;UBERON:0003894!5.00e-18!22;UBERON:0004161!5.00e-18!22;UBERON:0008836!5.00e-18!22;UBERON:0009854!6.61e-17!23;UBERON:0009856!6.61e-17!23;UBERON:0002365!6.07e-15!25;UBERON:0002330!6.07e-15!25;UBERON:0002405!1.74e-11!70;UBERON:0005911!6.62e-10!69;UBERON:0003929!1.37e-09!55;UBERON:0000490!5.14e-08!66;UBERON:0005057!3.42e-07!51;UBERON:0005256!4.16e-07!47 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,4.10e-34,22;UBERON:0007499,4.10e-34,22;UBERON:0006925,4.10e-34,22;UBERON:0009497,4.10e-34,22;UBERON:0000015,4.10e-34,22;UBERON:0002423,4.10e-34,22;UBERON:0006235,4.10e-34,22;UBERON:0008835,4.10e-34,22;UBERON:0003894,4.10e-34,22;UBERON:0004161,4.10e-34,22;UBERON:0008836,4.10e-34,22;UBERON:0009854,1.58e-32,23;UBERON:0009856,1.58e-32,23;UBERON:0002365,9.73e-30,25;UBERON:0002330,9.73e-30,25;UBERON:0005256,1.88e-15,45;UBERON:0003914,1.09e-14,47;UBERON:0005172,5.45e-14,49;UBERON:0005173,5.45e-14,49;UBERON:0002417,5.45e-14,49;UBERON:0000916,5.45e-14,49;UBERON:0003929,3.40e-12,55;UBERON:0002368,5.66e-11,60;UBERON:0003104,9.41e-11,61;UBERON:0009142,9.41e-11,61;UBERON:0002530,6.14e-10,65;UBERON:0000490,9.46e-10,66;UBERON:0009569,9.46e-10,66;UBERON:0005911,3.22e-09,69;UBERON:0000949,9.90e-09,72;UBERON:0005177,9.76e-08,79;UBERON:0001041,1.31e-07,80;UBERON:0002384,1.91e-07,46 | |||
|phase1_expression=0,0.348975407639361,0.454999239389536,0,0,0.839396359559449,0.700837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0.639969691173627,0.68822784320151,0,0.430761996159075,0.215471232685889,0,0,0.221730510655305,0,0,0,0.288851619751275,0,0,0,0.7813353445238,0.523523743973798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.94944844504769,2.96659908770092,2.8419204597844,0.599200221036809,0,0.103689612308478,0,0,0.285650984403804,0,0,0,0,0,0.127687338085188,0,0.131886287730194,0,0,0,0,0,0,0,0,0,0.151143120213571,1.44932244350839,0.860423876981386,4.0798280022465,4.85732872474035,1.29955283489534,4.03224198387602,1.40444420131752,0,0,0,0,0,0,0,0,0,0,1.7127581957859,0,0.29688427812965,0,0,0,0,0,0,0,0,0,0,0.220841518460394,0,0,0,0.209446706813455,0.255457055208591,0.599075622529601,0,0.635351135365324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0.702213187313235,0.51469581422943,0.284163499395593,0,0,0,0,0,0,0.232533944750408,0.536546802799238,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.41131567717872,0,0.196558995113203,0,0.202860121388503,0.482354319504834,0.763877555344259,1.43848068725405,0.810676133875177,2.47105271869273,2.87536413054709,1.11642284300551,1.24815069245824,4.2938409251009,4.30553792452589,5.30687873499704,0.369506380333209,0,0,0,0,0,0,0,0.315270288212382,0,0.159454768657487,0.327726629431476,0.345369963731791,0.144649058581512,4.52373851817817,3.26343410291226,0,0,0,0,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0,0.283880170416537,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0.356497378384721,0.316036757935816,0,0,0,0,0,0,0,0,0,0.304464949114599,0,0,0,0.32977250588296,0,0.0603129249281559,0,0.164140899745061,0,0,0,0,0,0,0.136694227721025,0,0,0,0.276399947608848,0,0,0,0.108005340821801,0,0,0.134864346384821,0.247960367176008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0.179026695667481,0,0,0,0,0.15241361331,0.100826185136841,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03552062350364,0,0,0,0.243106717068294,0,0.183843508450014,0,0,0,0,0,0,0,0.0640251524048693,0.17230640686684,0,0.231768651889711,0,0,0,0,0,0.238436189947321,0.145346416632329,0.0941093804153306,0,0,0,0.135804113845862,0.561142271657738,0,0.0985044823755635,0,0.154936841185966,0,0,0,0.214871054048298,0.191288332068843,0.220591419119515,0 | |||
|short_description=p@chr7:56653449..56653462,+ | |||
}} |
Revision as of 13:54, 14 September 2013
Short description: | p@chr7:56653449..56653462, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:56653449..56653462, + |
Coexpression cluster: | MCL_coexpression_mm9:200 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.06e-20 | 5 |
bone marrow cell | 3.52e-13 | 3 |
mesenchymal stem cell of the bone marrow | 3.52e-13 | 3 |
bone marrow macrophage | 1.83e-09 | 2 |
connective tissue cell | 1.91e-07 | 46 |
mesenchymal cell | 1.91e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
liver | 4.10e-34 | 22 |
epithelial sac | 4.10e-34 | 22 |
digestive gland | 4.10e-34 | 22 |
epithelium of foregut-midgut junction | 4.10e-34 | 22 |
anatomical boundary | 4.10e-34 | 22 |
hepatobiliary system | 4.10e-34 | 22 |
foregut-midgut junction | 4.10e-34 | 22 |
hepatic diverticulum | 4.10e-34 | 22 |
liver primordium | 4.10e-34 | 22 |
septum transversum | 4.10e-34 | 22 |
liver bud | 4.10e-34 | 22 |
digestive tract diverticulum | 1.58e-32 | 23 |
sac | 1.58e-32 | 23 |
exocrine gland | 9.73e-30 | 25 |
exocrine system | 9.73e-30 | 25 |
trunk mesenchyme | 1.88e-15 | 45 |
epithelial tube | 1.09e-14 | 47 |
abdomen element | 5.45e-14 | 49 |
abdominal segment element | 5.45e-14 | 49 |
abdominal segment of trunk | 5.45e-14 | 49 |
abdomen | 5.45e-14 | 49 |
gut epithelium | 3.40e-12 | 55 |
endocrine gland | 5.66e-11 | 60 |
mesenchyme | 9.41e-11 | 61 |
entire embryonic mesenchyme | 9.41e-11 | 61 |
gland | 6.14e-10 | 65 |
unilaminar epithelium | 9.46e-10 | 66 |
subdivision of trunk | 9.46e-10 | 66 |
endo-epithelium | 3.22e-09 | 69 |
endocrine system | 9.90e-09 | 72 |
trunk region element | 9.76e-08 | 79 |
foregut | 1.31e-07 | 80 |
connective tissue | 1.91e-07 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.