Personal tools

Coexpression cluster:C2666: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 7: Line 7:
|ontology_enrichment_uberon=UBERON:0001049!6.32e-85!56;UBERON:0005068!6.32e-85!56;UBERON:0006241!6.32e-85!56;UBERON:0007135!6.32e-85!56;UBERON:0000073!2.46e-79!53;UBERON:0002616!2.46e-79!53;UBERON:0001017!2.49e-67!81;UBERON:0002780!4.62e-67!41;UBERON:0001890!4.62e-67!41;UBERON:0003080!4.62e-67!41;UBERON:0006240!4.62e-67!41;UBERON:0000955!1.59e-63!68;UBERON:0006238!1.59e-63!68;UBERON:0003528!1.99e-63!34;UBERON:0002020!1.99e-63!34;UBERON:0001016!5.55e-60!89;UBERON:0001893!1.69e-57!34;UBERON:0002346!2.12e-56!86;UBERON:0003075!5.45e-56!82;UBERON:0007284!5.45e-56!82;UBERON:0002791!7.75e-56!32;UBERON:0001869!7.98e-56!32;UBERON:0002619!2.80e-47!22;UBERON:0003056!1.93e-43!61;UBERON:0010371!1.09e-42!104;UBERON:0000956!2.17e-41!25;UBERON:0000203!2.17e-41!25;UBERON:0001950!2.57e-39!20;UBERON:0007023!1.53e-38!114;UBERON:0010314!2.19e-34!132;UBERON:0004121!8.51e-30!171;UBERON:0000924!8.51e-30!171;UBERON:0006601!8.51e-30!171;UBERON:0000200!5.41e-27!6;UBERON:0011216!1.58e-25!223;UBERON:0000125!9.02e-24!9;UBERON:0002308!9.02e-24!9;UBERON:0000025!2.77e-21!192;UBERON:0003076!2.83e-18!15;UBERON:0003057!2.83e-18!15;UBERON:0002420!1.38e-17!9;UBERON:0007245!1.38e-17!9;UBERON:0010009!1.38e-17!9;UBERON:0010011!1.38e-17!9;UBERON:0000454!1.38e-17!9;UBERON:0009663!7.04e-16!7;UBERON:0004111!1.62e-15!240;UBERON:0000349!2.62e-15!5;UBERON:0001870!1.57e-14!3;UBERON:0000988!2.98e-14!3;UBERON:0004733!2.52e-13!12;UBERON:0002028!2.52e-13!12;UBERON:0007277!2.52e-13!12;UBERON:0000477!6.17e-13!373;UBERON:0002680!7.16e-13!9;UBERON:0001895!7.16e-13!9;UBERON:0010092!7.16e-13!9;UBERON:0004732!2.98e-12!13;UBERON:0002298!3.87e-12!6;UBERON:0002784!4.04e-11!4;UBERON:0000369!4.18e-11!4;UBERON:0002435!4.18e-11!4;UBERON:0000204!4.18e-11!4;UBERON:0010082!4.18e-11!4;UBERON:0003296!6.50e-11!4;UBERON:0010133!6.50e-11!4;UBERON:0000064!8.12e-11!218;UBERON:0001894!1.00e-10!7;UBERON:0006222!1.00e-10!7;UBERON:0001954!1.10e-10!2;UBERON:0003022!1.10e-10!2;UBERON:0002421!1.10e-10!2;UBERON:0002600!1.10e-10!2;UBERON:0002702!1.39e-10!2;UBERON:0001871!1.54e-10!6;UBERON:0000483!1.55e-10!306;UBERON:0000119!2.32e-10!309;UBERON:0001905!2.32e-10!2;UBERON:0002757!2.32e-10!2;UBERON:0010134!2.32e-10!2;UBERON:0005408!2.32e-10!2;UBERON:0001899!2.32e-10!2;UBERON:0002148!2.93e-10!2;UBERON:0006331!2.93e-10!2;UBERON:0009662!2.93e-10!2;UBERON:0002771!3.07e-10!2;UBERON:0000481!3.46e-10!342;UBERON:0002021!8.10e-09!5;UBERON:0001872!9.50e-09!5;UBERON:0005383!2.56e-07!3;UBERON:0005382!2.56e-07!3;UBERON:0002240!7.60e-07!3;UBERON:0005174!7.60e-07!3;UBERON:0001137!7.60e-07!3
|ontology_enrichment_uberon=UBERON:0001049!6.32e-85!56;UBERON:0005068!6.32e-85!56;UBERON:0006241!6.32e-85!56;UBERON:0007135!6.32e-85!56;UBERON:0000073!2.46e-79!53;UBERON:0002616!2.46e-79!53;UBERON:0001017!2.49e-67!81;UBERON:0002780!4.62e-67!41;UBERON:0001890!4.62e-67!41;UBERON:0003080!4.62e-67!41;UBERON:0006240!4.62e-67!41;UBERON:0000955!1.59e-63!68;UBERON:0006238!1.59e-63!68;UBERON:0003528!1.99e-63!34;UBERON:0002020!1.99e-63!34;UBERON:0001016!5.55e-60!89;UBERON:0001893!1.69e-57!34;UBERON:0002346!2.12e-56!86;UBERON:0003075!5.45e-56!82;UBERON:0007284!5.45e-56!82;UBERON:0002791!7.75e-56!32;UBERON:0001869!7.98e-56!32;UBERON:0002619!2.80e-47!22;UBERON:0003056!1.93e-43!61;UBERON:0010371!1.09e-42!104;UBERON:0000956!2.17e-41!25;UBERON:0000203!2.17e-41!25;UBERON:0001950!2.57e-39!20;UBERON:0007023!1.53e-38!114;UBERON:0010314!2.19e-34!132;UBERON:0004121!8.51e-30!171;UBERON:0000924!8.51e-30!171;UBERON:0006601!8.51e-30!171;UBERON:0000200!5.41e-27!6;UBERON:0011216!1.58e-25!223;UBERON:0000125!9.02e-24!9;UBERON:0002308!9.02e-24!9;UBERON:0000025!2.77e-21!192;UBERON:0003076!2.83e-18!15;UBERON:0003057!2.83e-18!15;UBERON:0002420!1.38e-17!9;UBERON:0007245!1.38e-17!9;UBERON:0010009!1.38e-17!9;UBERON:0010011!1.38e-17!9;UBERON:0000454!1.38e-17!9;UBERON:0009663!7.04e-16!7;UBERON:0004111!1.62e-15!240;UBERON:0000349!2.62e-15!5;UBERON:0001870!1.57e-14!3;UBERON:0000988!2.98e-14!3;UBERON:0004733!2.52e-13!12;UBERON:0002028!2.52e-13!12;UBERON:0007277!2.52e-13!12;UBERON:0000477!6.17e-13!373;UBERON:0002680!7.16e-13!9;UBERON:0001895!7.16e-13!9;UBERON:0010092!7.16e-13!9;UBERON:0004732!2.98e-12!13;UBERON:0002298!3.87e-12!6;UBERON:0002784!4.04e-11!4;UBERON:0000369!4.18e-11!4;UBERON:0002435!4.18e-11!4;UBERON:0000204!4.18e-11!4;UBERON:0010082!4.18e-11!4;UBERON:0003296!6.50e-11!4;UBERON:0010133!6.50e-11!4;UBERON:0000064!8.12e-11!218;UBERON:0001894!1.00e-10!7;UBERON:0006222!1.00e-10!7;UBERON:0001954!1.10e-10!2;UBERON:0003022!1.10e-10!2;UBERON:0002421!1.10e-10!2;UBERON:0002600!1.10e-10!2;UBERON:0002702!1.39e-10!2;UBERON:0001871!1.54e-10!6;UBERON:0000483!1.55e-10!306;UBERON:0000119!2.32e-10!309;UBERON:0001905!2.32e-10!2;UBERON:0002757!2.32e-10!2;UBERON:0010134!2.32e-10!2;UBERON:0005408!2.32e-10!2;UBERON:0001899!2.32e-10!2;UBERON:0002148!2.93e-10!2;UBERON:0006331!2.93e-10!2;UBERON:0009662!2.93e-10!2;UBERON:0002771!3.07e-10!2;UBERON:0000481!3.46e-10!342;UBERON:0002021!8.10e-09!5;UBERON:0001872!9.50e-09!5;UBERON:0005383!2.56e-07!3;UBERON:0005382!2.56e-07!3;UBERON:0002240!7.60e-07!3;UBERON:0005174!7.60e-07!3;UBERON:0001137!7.60e-07!3
|tfbs_overrepresentation=0.191353,0.0774498,0.814139,0.00203464,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.243245,0.172742,0.107781,0.124486,0.0550418,0.276459,0.039931,0.119094,0.186914,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.788552,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.273035,0.103044,0.138225,0.0390464,0.194086,0.142115,0.00517131,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.690341,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.701894,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.2321,0.179282,0.564569,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.0108257,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.346995,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.128945,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.476758,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.687863,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.169684,0.690367,0.810881,0.869559,0.389734,0.668426,0.901171,0.888682,0.104083,0.73391,0.332539,0.545329,0.464128,0.389374,0.594055,0.101113,0.489273,0.413223,0.639461,0.720642,0.0092283,0.369161,0.500422,0.49089,0.687176,0.702495,0.241524,0.122191,0.0299727,0.520726,0.143893,0.41477,0.279946,0.524104,0.132138,0.563725,0.751064,0.632838,0.624969,0.127765,0.511459,0.586668,0.322903,0.350886,0.0128438,0.218919,0.398372,0.286293,0.606558,0.708425,0.0739876,0.395864,0.683133,0.368633,0.547291,0.682118,0.512763,0.369971,0.578349,0.537928,0.129952,0.683088,0.714007,0.235444,0.804772,0.899283,0.840703,0.0696107,0.302142,0.239545,0.432689,0.640367,0.343881,0.730486,0.606382,0.617741,0.626346,0.316925,0.0728506,0.573659,0.211506,0.0883859,0.0962508,0.238465,0.70198,0.853221,0.6873,0.508325,0.436735,0.651927,0.093482,0.54723,0.280307,0.393583,0.794849,0.0596868,0.0984075,0.293026,0.753513,0.694744,0.605423,0.372182,0.429205,0.578951,0.365653,0.41035,0.784024,0.35234,0.644643,0.525923,0.291917,0.421082,0.25441,0.202782,0.672876,0.517933,0.584705,0.165503,0.620475,0.926442,0.103882,0.188259,0.189182,0.477589,0.46699,0.546448,0.560187,0.321282,0.021087,0.0616078,0.178485,0.329745,0.175552,0.129238,0.283924,0.370995,0.074448,0.429696,0.0866206,0.0861729,0.706685,0.606408,0.627185,0.360203,0.333725,0.447838,0.289666,0.500627,0.513045,0.452694,0.565545,0.845507,0.265037,0.629795,0.754776,0.53531,0.0664979,0.424526,0.657528,0.356381,0.0181543,0.55524,0.624689,0.206945,0.304719,0.462531,0.296994,0.244339,0.117049,0.0786167,0.629381,0.729876,0.433821,0.64428,0.113459,0.576549,0.499072,0.744662,0.734628,0.397546,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.187642,0.286156,0.261868,0.541583,0.540322,0.247151,0.146385,0.365815,0.0576261,0.382413,0.164977,0.175633,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.383126,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.238082,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.0232207,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.226143,0.460406,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.515487,0.159873,0.142462,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.487259,0.302909,0.363016,0.100188,0.223102,0.107653,0.235857,0.419621,0.191914,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.787798,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.00493244,0.351199,0.833813,0.415079,0.278645,0.365775,0.155708,0.248017,0.22995,0.652972,0.0760151,0.0629459,0.486024,0.00331608,0.0278785,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.960445,0.974549,0.265324,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.0158721,0.0595495,0.071232,0.149346,0.121978,0.22302,0.137423,0.284016,0.0754883,0.299492,0.100006,0.362866,0.197817,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.246601,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.0262879,0.24948,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.00966571,0.147842,0.0339286,0.217363,0.119015,0.690952,0.21618,0.243266,0.107021,0.238657,0.20272,0.392453,0.61565,0.0780061,0.315336,0.230477,0.279823,0.295555,0.502112,0.724669,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.514243,0.459091,0.54832,0.502211,0.296013,0.649813,0.537932,0.127256,0.523209,0.548059,0.25423,0.490559,0.45013,0.500698,0.472542,0.685908,0.747471,0.174869,0.818701,0.483077,0.590496,0.603763,0.541914,0.0778742,0.938109,0.934991,0.290703,0.622694,0.722684,0.139104,0.360199,0.608176,0.657141,0.824761,0.365494,0.212703,0.56318,0.364079,0.680099,0.579886,0.421038,0.569409,0.328518,0.187186,0.310552,0.865054,0.483764,0.829658,0.784052,0.209437,0.843495,0.748403,0.598945,0.882403,0.464001,0.871271,0.579004,0.870272,0.839946,0.860705,0.261575,0.257956,0.264245,0.379063,0.326516,0.522925,0.436016,0.475063,0.202522,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.35974,0.667777,0.39549,0.234254,0.357409,0.86719,0.721266,0.15578,0.620526,0.404625,0.759068,0.424691,0.715362,0.479581,0.259048,0.884725,0.642173,0.284496,0.16228,0.512178,0.563206,0.829402,0.684899,0.263302,0.552023,0.180735,0.775168,0.216102,0.254659,0.109605,0.397869,0.582542,0.226491,0.417131,0.463987,0.627953,0.503881,0.454761,0.639483,0.483658,0.452129,0.301581,0.261657,0.346776,0.131322,0.545655,0.438176,0.349112,0.741477,0.385425,0.0531591,0.461541,0.386339,0.382854,0.598787,0.478745,0.611661,0.00716065,0.475047,0.557967,0.608127,0.282281,0.612712,0.2536,0.246827,0.564333,0.70712,0.387134,0.198743,0.0738474,0.668972,0.574252,0.493455,0.346636,0.457747,0.0694762,0.476541,0.579645,0.447581,0.42505,0.254628,0.713293,0.479347,0.102411,0.632833,0.0828233,0.387805,0.264038,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.0613938,0.242783,0.0947248,0.00849027,0.210656,0.246234,0.211271,0.0439036,0.267248,0.118257,0.125087,0.215123,0.00727088,0.469461,0.325254,0.266651,0.187728,0.231754,0.249415,0.283107,0.285648,0.427316,0.391071,0.279553,0.25563,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.0651578,0.147872,0.189388,0.0480552,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.437467,0.201057,0.15696,0.129351,0.0105865,0.0786166,0.042497,0.205513,0.282389,0.251421,0.162089,0.330223,0.387837,0.233244,0.207281,0.327401,0.0205476,0.27845,0.0138433,0.237871,0.239139,0.00468829,0.0612213,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,0.15156,0.287598,0.000621734,0.223773,0.25788,0.181895,0.253768,0.30702,0.202977,0.170837,0.327002,0.0452813,0.222656,0.028353,0.127111,0.259989,0.390754,0.355805,0.0433915,0.108118,0.259901,0.0102507,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.000297685,0.0486914,0.175784,0.262778,0.373453,0.362662,0.433518,0.184359,0.0634867,0.325785,0.257476,0.291176,0.081972,0.322827,0.0286371,0.359036,0.335984,0.0156657,0.208256,0.265058,0.256405,0.0109327,0.00593844,0.0976762,0.151361,0.279606,0.286696,0.0119686,0.251128,0.246177,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.0167026,0.289049,0.266974,0.125746,0.112897,0.0150081,0.222091,0.0228412,0.34423,0.0936726,0.343425,0.132374,0.285122,0.0280766,0.203996,0.276721,0.321965,0.264707,0.450113
|tfbs_overrepresentation=0.191353,0.0774498,0.814139,0.00203464,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.193153,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.243245,0.172742,0.107781,0.124486,0.0550418,0.276459,0.039931,0.119094,0.186914,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.788552,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.273035,0.103044,0.138225,0.0390464,0.194086,0.142115,0.00517131,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.216289,0.470097,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.713984,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.690341,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.423154,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.132631,0.0447483,0.0270258,0.0748174,0.180926,0.110194,0.215858,0.275495,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.701894,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.192028,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.2321,0.179282,0.564569,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.0891668,0.0108257,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.346995,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.128945,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.675167,0.476758,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,0.128521,0.1286,0.207017,0.14037,0.259646,0.0916845,0.687863,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.169684,0.690367,0.810881,0.869559,0.389734,0.668426,0.901171,0.888682,0.104083,0.73391,0.332539,0.545329,0.464128,0.389374,0.594055,0.101113,0.489273,0.413223,0.639461,0.720642,0.0092283,0.369161,0.500422,0.49089,0.687176,0.702495,0.241524,0.122191,0.0299727,0.520726,0.143893,0.41477,0.279946,0.524104,0.132138,0.563725,0.751064,0.632838,0.624969,0.127765,0.511459,0.586668,0.322903,0.350886,0.0128438,0.218919,0.398372,0.286293,0.606558,0.708425,0.0739876,0.395864,0.683133,0.368633,0.547291,0.682118,0.512763,0.369971,0.578349,0.537928,0.129952,0.683088,0.714007,0.235444,0.804772,0.899283,0.840703,0.0696107,0.302142,0.239545,0.432689,0.640367,0.343881,0.730486,0.606382,0.617741,0.626346,0.316925,0.0728506,0.573659,0.211506,0.0883859,0.0962508,0.238465,0.70198,0.853221,0.6873,0.508325,0.436735,0.651927,0.093482,0.54723,0.280307,0.393583,0.794849,0.0596868,0.0984075,0.293026,0.753513,0.694744,0.605423,0.372182,0.429205,0.578951,0.365653,0.41035,0.784024,0.35234,0.644643,0.525923,0.291917,0.421082,0.25441,0.202782,0.672876,0.517933,0.584705,0.165503,0.620475,0.926442,0.103882,0.188259,0.189182,0.477589,0.46699,0.546448,0.560187,0.321282,0.021087,0.0616078,0.178485,0.329745,0.175552,0.129238,0.283924,0.370995,0.074448,0.429696,0.0866206,0.0861729,0.706685,0.606408,0.627185,0.360203,0.333725,0.447838,0.289666,0.500627,0.513045,0.452694,0.565545,0.845507,0.265037,0.629795,0.754776,0.53531,0.0664979,0.424526,0.657528,0.356381,0.0181543,0.55524,0.624689,0.206945,0.304719,0.462531,0.296994,0.244339,0.117049,0.0786167,0.629381,0.729876,0.433821,0.64428,0.113459,0.576549,0.499072,0.744662,0.734628,0.397546,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.187642,0.286156,0.261868,0.541583,0.540322,0.247151,0.146385,0.365815,0.0576261,0.382413,0.164977,0.175633,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.383126,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.166608,0.227224,0.238082,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.0232207,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.271849,0.282657,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.226143,0.460406,0.0438521,0.435508,0.281453,0.0522771,0.0787278,0.515487,0.159873,0.142462,0.143935,0.332403,0.0379537,0.6545,0.187953,0.051459,0.114868,0.0726892,0.18732,0.32305,0.278397,0.245002,0.170848,0.487259,0.302909,0.363016,0.100188,0.223102,0.107653,0.235857,0.419621,0.191914,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,0.124464,0.544477,0.173134,0.101893,0.142875,0.167635,0.171311,0.787798,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.00493244,0.351199,0.833813,0.415079,0.278645,0.365775,0.155708,0.248017,0.22995,0.652972,0.0760151,0.0629459,0.486024,0.00331608,0.0278785,0.379174,0.0939463,0.286748,0.367925,0.0471607,0.163865,0.226359,0.960445,0.974549,0.265324,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.0158721,0.0595495,0.071232,0.149346,0.121978,0.22302,0.137423,0.284016,0.0754883,0.299492,0.100006,0.362866,0.197817,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,0.0826805,0.246601,0.193021,0.608002,0.202165,0.0946865,0.120618,0.079499,0.18762,0.195618,0.127688,0.201169,0.0262879,0.24948,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.00966571,0.147842,0.0339286,0.217363,0.119015,0.690952,0.21618,0.243266,0.107021,0.238657,0.20272,0.392453,0.61565,0.0780061,0.315336,0.230477,0.279823,0.295555,0.502112,0.724669,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.514243,0.459091,0.54832,0.502211,0.296013,0.649813,0.537932,0.127256,0.523209,0.548059,0.25423,0.490559,0.45013,0.500698,0.472542,0.685908,0.747471,0.174869,0.818701,0.483077,0.590496,0.603763,0.541914,0.0778742,0.938109,0.934991,0.290703,0.622694,0.722684,0.139104,0.360199,0.608176,0.657141,0.824761,0.365494,0.212703,0.56318,0.364079,0.680099,0.579886,0.421038,0.569409,0.328518,0.187186,0.310552,0.865054,0.483764,0.829658,0.784052,0.209437,0.843495,0.748403,0.598945,0.882403,0.464001,0.871271,0.579004,0.870272,0.839946,0.860705,0.261575,0.257956,0.264245,0.379063,0.326516,0.522925,0.436016,0.475063,0.202522,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.35974,0.667777,0.39549,0.234254,0.357409,0.86719,0.721266,0.15578,0.620526,0.404625,0.759068,0.424691,0.715362,0.479581,0.259048,0.884725,0.642173,0.284496,0.16228,0.512178,0.563206,0.829402,0.684899,0.263302,0.552023,0.180735,0.775168,0.216102,0.254659,0.109605,0.397869,0.582542,0.226491,0.417131,0.463987,0.627953,0.503881,0.454761,0.639483,0.483658,0.452129,0.301581,0.261657,0.346776,0.131322,0.545655,0.438176,0.349112,0.741477,0.385425,0.0531591,0.461541,0.386339,0.382854,0.598787,0.478745,0.611661,0.00716065,0.475047,0.557967,0.608127,0.282281,0.612712,0.2536,0.246827,0.564333,0.70712,0.387134,0.198743,0.0738474,0.668972,0.574252,0.493455,0.346636,0.457747,0.0694762,0.476541,0.579645,0.447581,0.42505,0.254628,0.713293,0.479347,0.102411,0.632833,0.0828233,0.387805,0.264038,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.0613938,0.242783,0.0947248,0.00849027,0.210656,0.246234,0.211271,0.0439036,0.267248,0.118257,0.125087,0.215123,0.00727088,0.469461,0.325254,0.266651,0.187728,0.231754,0.249415,0.283107,0.285648,0.427316,0.391071,0.279553,0.25563,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.0651578,0.147872,0.189388,0.0480552,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.437467,0.201057,0.15696,0.129351,0.0105865,0.0786166,0.042497,0.205513,0.282389,0.251421,0.162089,0.330223,0.387837,0.233244,0.207281,0.327401,0.0205476,0.27845,0.0138433,0.237871,0.239139,0.00468829,0.0612213,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,0.15156,0.287598,0.000621734,0.223773,0.25788,0.181895,0.253768,0.30702,0.202977,0.170837,0.327002,0.0452813,0.222656,0.028353,0.127111,0.259989,0.390754,0.355805,0.0433915,0.108118,0.259901,0.0102507,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.000297685,0.0486914,0.175784,0.262778,0.373453,0.362662,0.433518,0.184359,0.0634867,0.325785,0.257476,0.291176,0.081972,0.322827,0.0286371,0.359036,0.335984,0.0156657,0.208256,0.265058,0.256405,0.0109327,0.00593844,0.0976762,0.151361,0.279606,0.286696,0.0119686,0.251128,0.246177,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.0167026,0.289049,0.266974,0.125746,0.112897,0.0150081,0.222091,0.0228412,0.34423,0.0936726,0.343425,0.132374,0.285122,0.0280766,0.203996,0.276721,0.321965,0.264707,0.450113
|tfbs_overrepresentation_for_novel_motifs=0.590005,0.0888524,0.581696,0.741427,0.534346,0.739643,0.821651,0.395818,0.392841,0.151681,0.706765,0.867962,0.341754,0.809319,0.532789,0.559384,1.05593,0.471262,0.356737,0.223552,0.581762,0.169357,0.731221,0.528529,0.632849,0.892087,0.316693,0.728867,0.537869,0.297585,0.682839,1.09415,0.433165,0.344471,0.49475,0.0842336,0.491074,0.740899,0.463978,0.371755,1.23481,0.66492,0.183156,0.53106,0.0946706,0.61613,0.822818,0.694903,0.515703,0.538016,0.90714,0.83543,0.25073,1.17354,1.33024,0.812467,0.54284,0.777235,0.297448,0.776148,1.13655,0.825354,0.393426,1.02706,0.844545,0.991076,1.42026,1.79268,1.08337,1.62905,0.650393,1.03936,0.248021,1.32819,0.336329,0.321165,0.305238,1.00941,1.08,0.62601,0.362435,1.02594,0.844168,0.399165,1.27559,0.109222,0.221873,0.291738,0.934646,1.89266,1.51507,1.24792,1.11156,0.441618,0.535192,0.456994,0.354969,1.15558,0.939507,0.272395,0.465545,1.1057,1.14983,1.05974,0.979006,0.701817,1.04326,0.805616,0.632569,0.516141,0.594299,1.14697,0.575476,0.717043,1.46636,0.489254,0.12452,0.681522,0.988625,0.444962,1.31973,0.932085,0.736652,0.856196,1.57854,1.0102,0.814847,1.11673,1.36323,0.458105,1.24863,0.68598,1.37788,0.852645,1.52813,0.774456,0.676268,0.729481,1.48509,2.34913,1.94535,1.44718,0.8167,1.15194,0.980848,0.768101,0.963351,2.1895,0.661255,0.437774,0.66252,0.175846,1.24902,0.383416,0.824835,1.65997,0.917558,0.518428,0.632914,0.600782,1.44595,1.23002,1.07918,0.604379,0.997702,0.843324,0.423521,0.820225,0.0401987
}}
}}

Revision as of 15:38, 26 November 2012


Full id: C2666_cerebellum_hippocampus_medial_Neural_parietal_occipital_pineal



Phase1 CAGE Peaks

Hg19::chr2:166185518..166185522,+p@chr2:166185518..166185522
+
Hg19::chr2:39891675..39891682,+p34@TMEM178
Hg19::chr7:82583500..82583510,-p@chr7:82583500..82583510
-
Hg19::chr9:73710672..73710675,-p@chr9:73710672..73710675
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
neural tube6.32e-8556
neural rod6.32e-8556
future spinal cord6.32e-8556
neural keel6.32e-8556
regional part of nervous system2.46e-7953
regional part of brain2.46e-7953
central nervous system2.49e-6781
regional part of forebrain4.62e-6741
forebrain4.62e-6741
anterior neural tube4.62e-6741
future forebrain4.62e-6741
brain1.59e-6368
future brain1.59e-6368
brain grey matter1.99e-6334
gray matter1.99e-6334
nervous system5.55e-6089
telencephalon1.69e-5734
neurectoderm2.12e-5686
neural plate5.45e-5682
presumptive neural plate5.45e-5682
regional part of telencephalon7.75e-5632
cerebral hemisphere7.98e-5632
regional part of cerebral cortex2.80e-4722
pre-chordal neural plate1.93e-4361
ecto-epithelium1.09e-42104
cerebral cortex2.17e-4125
pallium2.17e-4125
neocortex2.57e-3920
adult organism1.53e-38114
structure with developmental contribution from neural crest2.19e-34132
ectoderm-derived structure8.51e-30171
ectoderm8.51e-30171
presumptive ectoderm8.51e-30171
gyrus5.41e-276
organ system subdivision1.58e-25223
neural nucleus9.02e-249
nucleus of brain9.02e-249
tube2.77e-21192
posterior neural tube2.83e-1815
chordal neural plate2.83e-1815
basal ganglion1.38e-179
nuclear complex of neuraxis1.38e-179
aggregate regional part of brain1.38e-179
collection of basal ganglia1.38e-179
cerebral subcortex1.38e-179
telencephalic nucleus7.04e-167
anatomical conduit1.62e-15240
limbic system2.62e-155
frontal cortex1.57e-143
pons2.98e-143
segmental subdivision of hindbrain2.52e-1312
hindbrain2.52e-1312
presumptive hindbrain2.52e-1312
anatomical cluster6.17e-13373
regional part of metencephalon7.16e-139
metencephalon7.16e-139
future metencephalon7.16e-139
segmental subdivision of nervous system2.98e-1213
brainstem3.87e-126
regional part of diencephalon4.04e-114
corpus striatum4.18e-114
striatum4.18e-114
ventral part of telencephalon4.18e-114
future corpus striatum4.18e-114
gland of diencephalon6.50e-114
neuroendocrine gland6.50e-114
organ part8.12e-11218
diencephalon1.00e-107
future diencephalon1.00e-107
Ammon's horn1.10e-102
lobe parts of cerebral cortex1.10e-102
hippocampal formation1.10e-102
limbic lobe1.10e-102
middle frontal gyrus1.39e-102
temporal lobe1.54e-106
epithelium1.55e-10306
cell layer2.32e-10309
pineal body2.32e-102
regional part of epithalamus2.32e-102
secretory circumventricular organ2.32e-102
circumventricular organ2.32e-102
epithalamus2.32e-102
locus ceruleus2.93e-102
brainstem nucleus2.93e-102
hindbrain nucleus2.93e-102
middle temporal gyrus3.07e-102
multi-tissue structure3.46e-10342
occipital lobe8.10e-095
parietal lobe9.50e-095
caudate-putamen2.56e-073
dorsal striatum2.56e-073
spinal cord7.60e-073
dorsal region element7.60e-073
dorsum7.60e-073


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C2666&oldid=2559003"