FFCP PHASE1:Mm9::chr2:32576600..32576628,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 8: | Line 8: | ||
|id=chr2:32576600..32576628,+ | |id=chr2:32576600..32576628,+ | ||
|ontology_enrichment_celltype=CL:0000988!1.45e-10!32;CL:0002032!1.45e-10!32;CL:0000037!1.45e-10!32;CL:0000566!1.45e-10!32;CL:0000837!1.45e-10!32;CL:0000738!2.10e-08!17;CL:0002087!2.10e-08!17;CL:0002031!7.11e-08!25;CL:0000542!4.76e-07!13;CL:0000051!4.76e-07!13;CL:0000838!9.82e-07!12 | |ontology_enrichment_celltype=CL:0000988!1.45e-10!32;CL:0002032!1.45e-10!32;CL:0000037!1.45e-10!32;CL:0000566!1.45e-10!32;CL:0000837!1.45e-10!32;CL:0000738!2.10e-08!17;CL:0002087!2.10e-08!17;CL:0002031!7.11e-08!25;CL:0000542!4.76e-07!13;CL:0000051!4.76e-07!13;CL:0000838!9.82e-07!12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.43e-12,32;CL:0002032,1.43e-12,32;CL:0000037,1.43e-12,32;CL:0000837,1.43e-12,32;CL:0002031,1.65e-09,25;CL:0000738,3.09e-09,17;CL:0002087,3.09e-09,17;CL:0000542,1.02e-07,13;CL:0000051,1.02e-07,13;CL:0000838,2.29e-07,12 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.30e-16!48;UBERON:0002390!5.07e-15!45;UBERON:0003061!5.07e-15!45;UBERON:0002405!1.11e-11!70;UBERON:0000926!6.99e-11!193;UBERON:0004120!6.99e-11!193;UBERON:0006603!6.99e-11!193;UBERON:0004177!6.30e-10!29;UBERON:0003081!4.14e-09!88;UBERON:0001004!1.03e-07!42;UBERON:0000065!1.33e-07!41;UBERON:0003408!4.77e-07!24;UBERON:0002370!5.72e-07!23;UBERON:0000974!5.72e-07!23;UBERON:0004807!5.72e-07!23;UBERON:0005058!5.72e-07!23;UBERON:0003351!5.72e-07!23;UBERON:0009113!5.72e-07!23;UBERON:0003295!5.72e-07!23;UBERON:0009722!5.72e-07!23;UBERON:0005562!5.72e-07!23;UBERON:0007690!5.72e-07!23;UBERON:0001041!5.74e-07!92;UBERON:0001048!6.19e-07!147 | |ontology_enrichment_uberon=UBERON:0002193!3.30e-16!48;UBERON:0002390!5.07e-15!45;UBERON:0003061!5.07e-15!45;UBERON:0002405!1.11e-11!70;UBERON:0000926!6.99e-11!193;UBERON:0004120!6.99e-11!193;UBERON:0006603!6.99e-11!193;UBERON:0004177!6.30e-10!29;UBERON:0003081!4.14e-09!88;UBERON:0001004!1.03e-07!42;UBERON:0000065!1.33e-07!41;UBERON:0003408!4.77e-07!24;UBERON:0002370!5.72e-07!23;UBERON:0000974!5.72e-07!23;UBERON:0004807!5.72e-07!23;UBERON:0005058!5.72e-07!23;UBERON:0003351!5.72e-07!23;UBERON:0009113!5.72e-07!23;UBERON:0003295!5.72e-07!23;UBERON:0009722!5.72e-07!23;UBERON:0005562!5.72e-07!23;UBERON:0007690!5.72e-07!23;UBERON:0001041!5.74e-07!92;UBERON:0001048!6.19e-07!147 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.82e-19,48;UBERON:0002405,2.82e-19,48;UBERON:0002390,6.29e-18,45;UBERON:0003061,6.29e-18,45;UBERON:0004177,7.27e-12,29;UBERON:0005057,7.27e-12,29;UBERON:0003081,3.81e-10,87;UBERON:0001004,9.62e-10,42;UBERON:0000926,9.77e-10,120;UBERON:0004120,9.77e-10,120;UBERON:0006603,9.77e-10,120;UBERON:0000065,1.27e-09,41;UBERON:0003408,1.52e-08,24;UBERON:0002370,1.81e-08,23;UBERON:0000974,1.81e-08,23;UBERON:0004807,1.81e-08,23;UBERON:0005058,1.81e-08,23;UBERON:0003351,1.81e-08,23;UBERON:0009113,1.81e-08,23;UBERON:0003295,1.81e-08,23;UBERON:0009722,1.81e-08,23;UBERON:0005562,1.81e-08,23;UBERON:0007690,1.81e-08,23;UBERON:0001041,2.49e-08,80;UBERON:0000077,3.19e-08,35;UBERON:0006562,9.90e-08,24;UBERON:0001557,9.90e-08,24;UBERON:0001042,9.90e-08,24;UBERON:0008814,9.90e-08,24;UBERON:0009145,9.90e-08,24;UBERON:0001048,1.51e-07,134;UBERON:0002371,6.70e-07,16 | |||
|phase1_expression=0,0,0,0,0,0,0,26.4702813055231,1.54867594366833,2.34064526321993,2.91070545983358,3.74929147278081,30.9873321175482,27.0129043474702,3.99731714178795,7.28910962603373,3.49780939064073,37.3822665949512,36.3353249055208,25.4633791078818,0.510259740906419,16.9787526553514,13.8435888243636,2.55987876469451,3.21172993494038,0,0,0,0.380046838912748,0.504060259519861,0.221730510655305,0,0,0,0,0,0,53.5720487343242,23.440060335714,41.8818995179039,55.8819913629464,54.6436387966757,54.3771595394892,0,0,0,0,0.872100625521786,0,0.194429899074283,0.839918529752175,2.87505128729943,12.9192606664457,12.3311564141929,11.7632829699862,0,0,0,0,0,0,0.677689064138264,0,1.7997994345628,0,2.1314403448383,3.59520132622086,3.45796474789399,0.207379224616955,0.270011876663381,0.210324961351382,0.285650984403804,0.662605622854841,0.489963196859816,0,0,0,0.255374676170375,0,0,0.182975287204819,0,0,0,0,0.883885756421003,0.569486723196412,0.186399445825301,0.227178579999552,0.529000920747499,0.289864488701678,0.860423876981386,0,0,0,0,0.983110940922263,0,0,0.35333957451034,0.281686839553361,0,0,0,0,0,0,1.02765491747154,25.3759125974228,0.742210695324124,0.867426633830679,2.43572382649713,1.61430848079241,0.60289056221049,1.17588707135705,0.251333182659351,0.247194967734374,0.289198713839823,12.3845477272982,1.13236794963186,5.74187947997023,4.84875253135222,0,0,0.209446706813455,1.78819938646014,5.27186547826049,2.39961092397363,6.98886248901856,0.149790639404823,0.457500602818626,0.251308704225729,0.347648640384553,0.511430914660661,0.41557608911912,0.162241263067758,2.34230536855727,6.59356944233493,1.0108910337347,0.420883711772948,1.69156575851515,1.14951052216736,1.0803727788321,0.30140963567143,1.36072998302656,2.562274405697,0.937017245597288,0,0.431135985865684,1.32374256117473,1.75951124163949,1.7535658594206,2.22437799380478,1.0447564995665,1.23469281844766,3.38358253591438,8.42655824775882,7.20574139921202,3.6941254921427,2.89976081549703,1.87620847984877,2.16074473753218,1.65721314909647,0.787056926989615,1.69693824176116,1.62773761325285,0.268273401399619,1.05088808130453,0.822799249567402,1.14917224855367,0.56748166682099,0.584799949701329,0.878200461164203,0.402619256281115,0,0.514523061896422,0,0,3.83918850963421,4.64473343720877,2.06187938115349,1.00841762311671,0.667134131534611,0.951128130562796,0.474529061544512,1.15289268306808,1.25667604400135,0.994782360205754,0.58489226135736,2.69645822596266,0.432276099749388,0.796565093017469,1.32767530667157,1.94222471436539,0,2.44381593414377,2.13347735884388,0.98190147846446,0.885311519739602,0.885660887877613,0.784993639206874,0.123397163921801,0,1.66845105716094,2.75182593158484,0.899448449539415,1.82574109249653,1.92941727801933,4.32863948028414,2.87696137450811,3.40483976227574,1.64736847912849,1.43768206527355,4.09355042435354,0.936113019343682,0.505157755894224,0.179397413521912,1.4473305640901,4.24932337383191,2.08440552947533,2.28150967018836,1.69745085775188,3.28566347603903,1.50755631697634,3.80869825417622,2.34160377429359,5.2019597555043,4.4292937929755,2.39182152986231,4.26044618260919,4.48980952851328,3.03763023021174,4.52373851817817,4.89515115436839,1.96705709207614,1.10374698521893,0.160550589987792,0.468846746368813,1.14754461763673,1.26235463602186,0.631016438832513,0.780877488593277,0.430846795465598,0.238968797952552,0,0,0,0.584511715822624,0.790575555893047,0,0.851640511249612,4.80777129901589,5.04949573996086,1.48473110675282,0,5.82673526771955,3.02323556964751,1.69744571780308,3.2483208216885,1.53717573971964,1.03371317267288,1.45413491791002,0.712994756769443,1.26414703174326,1.05418608574999,0,0,0.540183282093931,1.68166288917581,2.14337035031592,0.709360934569094,0.713475270408282,0.658196082408484,0.304464949114599,0.938686832254841,0,0.441056796109924,0.8244312647074,0.484393280087717,0.603129249281559,0.358117032009409,0,1.45740418314925,0.556275906031529,11.4483490134561,6.60437977482312,8.14855920426731,7.34636982318295,9.56859594047176,11.4389086603261,5.26933132980952,5.17820373597535,6.63359874261234,0,2.53068794864908,3.04979200690273,2.91614420218863,1.67270636811575,1.09181281873089,0.809186078308924,0.991841468704031,0.26175594198403,0.388844919875379,1.86401793926078,0,1.79419855252775,2.64733584731356,3.88902376688095,2.32487682259916,2.53434188236167,2.46450201156083,1.3020438484395,0.524296722128554,0.241584120826006,0,13.5884781870117,4.45995473638361,5.85452455839515,4.28738715826724,6.80301443536429,6.15912199821921,11.418567704397,10.0428878478713,9.08698049533329,11.27860738494,9.17518284745249,11.402572046551,10.0060315305943,12.0383209247016,0.453460767230423,1.55390167361845,2.42227412845584,2.18250001273302,0.965947970160952,1.12609485270709,0.549454872801795,1.2862102744744,2.00628841614145,1.12950368523413,0,0.572895513439397,0.171853182343688,0,0.755393897389701,0.675022500231806,0,0,0,1.03787347584177,3.19219898720825,1.70733605754134,2.43106717068294,2.51535795153579,1.10306105070008,1.77797382241292,1.44224540067226,0.64183841918363,0.505394423527595,0.760437899670719,1.50901073108861,1.40462261204824,0.768301828858431,1.20614484806788,0.952587382566147,1.15884325944855,0.192909220463705,1.64834360321323,2.06078488188156,1.37147700954166,1.4198064492747,0.715308569841963,1.30811774969096,1.59985946706062,1.01537529470012,1.46342378298218,0.789209134313529,1.08643291076689,1.68342681497322,1.18635018124174,0.886540341380071,0.818462086339379,0.929621047115796,1.35034627686799,1.99848462350357,1.87145286756327,0.859484216193193,1.14772999241306,3.75005412503176,3.01428186306548 | |phase1_expression=0,0,0,0,0,0,0,26.4702813055231,1.54867594366833,2.34064526321993,2.91070545983358,3.74929147278081,30.9873321175482,27.0129043474702,3.99731714178795,7.28910962603373,3.49780939064073,37.3822665949512,36.3353249055208,25.4633791078818,0.510259740906419,16.9787526553514,13.8435888243636,2.55987876469451,3.21172993494038,0,0,0,0.380046838912748,0.504060259519861,0.221730510655305,0,0,0,0,0,0,53.5720487343242,23.440060335714,41.8818995179039,55.8819913629464,54.6436387966757,54.3771595394892,0,0,0,0,0.872100625521786,0,0.194429899074283,0.839918529752175,2.87505128729943,12.9192606664457,12.3311564141929,11.7632829699862,0,0,0,0,0,0,0.677689064138264,0,1.7997994345628,0,2.1314403448383,3.59520132622086,3.45796474789399,0.207379224616955,0.270011876663381,0.210324961351382,0.285650984403804,0.662605622854841,0.489963196859816,0,0,0,0.255374676170375,0,0,0.182975287204819,0,0,0,0,0.883885756421003,0.569486723196412,0.186399445825301,0.227178579999552,0.529000920747499,0.289864488701678,0.860423876981386,0,0,0,0,0.983110940922263,0,0,0.35333957451034,0.281686839553361,0,0,0,0,0,0,1.02765491747154,25.3759125974228,0.742210695324124,0.867426633830679,2.43572382649713,1.61430848079241,0.60289056221049,1.17588707135705,0.251333182659351,0.247194967734374,0.289198713839823,12.3845477272982,1.13236794963186,5.74187947997023,4.84875253135222,0,0,0.209446706813455,1.78819938646014,5.27186547826049,2.39961092397363,6.98886248901856,0.149790639404823,0.457500602818626,0.251308704225729,0.347648640384553,0.511430914660661,0.41557608911912,0.162241263067758,2.34230536855727,6.59356944233493,1.0108910337347,0.420883711772948,1.69156575851515,1.14951052216736,1.0803727788321,0.30140963567143,1.36072998302656,2.562274405697,0.937017245597288,0,0.431135985865684,1.32374256117473,1.75951124163949,1.7535658594206,2.22437799380478,1.0447564995665,1.23469281844766,3.38358253591438,8.42655824775882,7.20574139921202,3.6941254921427,2.89976081549703,1.87620847984877,2.16074473753218,1.65721314909647,0.787056926989615,1.69693824176116,1.62773761325285,0.268273401399619,1.05088808130453,0.822799249567402,1.14917224855367,0.56748166682099,0.584799949701329,0.878200461164203,0.402619256281115,0,0.514523061896422,0,0,3.83918850963421,4.64473343720877,2.06187938115349,1.00841762311671,0.667134131534611,0.951128130562796,0.474529061544512,1.15289268306808,1.25667604400135,0.994782360205754,0.58489226135736,2.69645822596266,0.432276099749388,0.796565093017469,1.32767530667157,1.94222471436539,0,2.44381593414377,2.13347735884388,0.98190147846446,0.885311519739602,0.885660887877613,0.784993639206874,0.123397163921801,0,1.66845105716094,2.75182593158484,0.899448449539415,1.82574109249653,1.92941727801933,4.32863948028414,2.87696137450811,3.40483976227574,1.64736847912849,1.43768206527355,4.09355042435354,0.936113019343682,0.505157755894224,0.179397413521912,1.4473305640901,4.24932337383191,2.08440552947533,2.28150967018836,1.69745085775188,3.28566347603903,1.50755631697634,3.80869825417622,2.34160377429359,5.2019597555043,4.4292937929755,2.39182152986231,4.26044618260919,4.48980952851328,3.03763023021174,4.52373851817817,4.89515115436839,1.96705709207614,1.10374698521893,0.160550589987792,0.468846746368813,1.14754461763673,1.26235463602186,0.631016438832513,0.780877488593277,0.430846795465598,0.238968797952552,0,0,0,0.584511715822624,0.790575555893047,0,0.851640511249612,4.80777129901589,5.04949573996086,1.48473110675282,0,5.82673526771955,3.02323556964751,1.69744571780308,3.2483208216885,1.53717573971964,1.03371317267288,1.45413491791002,0.712994756769443,1.26414703174326,1.05418608574999,0,0,0.540183282093931,1.68166288917581,2.14337035031592,0.709360934569094,0.713475270408282,0.658196082408484,0.304464949114599,0.938686832254841,0,0.441056796109924,0.8244312647074,0.484393280087717,0.603129249281559,0.358117032009409,0,1.45740418314925,0.556275906031529,11.4483490134561,6.60437977482312,8.14855920426731,7.34636982318295,9.56859594047176,11.4389086603261,5.26933132980952,5.17820373597535,6.63359874261234,0,2.53068794864908,3.04979200690273,2.91614420218863,1.67270636811575,1.09181281873089,0.809186078308924,0.991841468704031,0.26175594198403,0.388844919875379,1.86401793926078,0,1.79419855252775,2.64733584731356,3.88902376688095,2.32487682259916,2.53434188236167,2.46450201156083,1.3020438484395,0.524296722128554,0.241584120826006,0,13.5884781870117,4.45995473638361,5.85452455839515,4.28738715826724,6.80301443536429,6.15912199821921,11.418567704397,10.0428878478713,9.08698049533329,11.27860738494,9.17518284745249,11.402572046551,10.0060315305943,12.0383209247016,0.453460767230423,1.55390167361845,2.42227412845584,2.18250001273302,0.965947970160952,1.12609485270709,0.549454872801795,1.2862102744744,2.00628841614145,1.12950368523413,0,0.572895513439397,0.171853182343688,0,0.755393897389701,0.675022500231806,0,0,0,1.03787347584177,3.19219898720825,1.70733605754134,2.43106717068294,2.51535795153579,1.10306105070008,1.77797382241292,1.44224540067226,0.64183841918363,0.505394423527595,0.760437899670719,1.50901073108861,1.40462261204824,0.768301828858431,1.20614484806788,0.952587382566147,1.15884325944855,0.192909220463705,1.64834360321323,2.06078488188156,1.37147700954166,1.4198064492747,0.715308569841963,1.30811774969096,1.59985946706062,1.01537529470012,1.46342378298218,0.789209134313529,1.08643291076689,1.68342681497322,1.18635018124174,0.886540341380071,0.818462086339379,0.929621047115796,1.35034627686799,1.99848462350357,1.87145286756327,0.859484216193193,1.14772999241306,3.75005412503176,3.01428186306548 | ||
|short_description=p4@Sh2d3c | |short_description=p4@Sh2d3c | ||
}} | }} |
Revision as of 00:25, 14 November 2012
Short description: | p4@Sh2d3c |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sh2d3c_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | 8bp_to_uc008jgp.1, uc008jgq.1_5end |
EntrezGene: | Sh2d3c |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.43e-12 | 32 |
hematopoietic oligopotent progenitor cell | 1.43e-12 | 32 |
hematopoietic stem cell | 1.43e-12 | 32 |
hematopoietic multipotent progenitor cell | 1.43e-12 | 32 |
hematopoietic lineage restricted progenitor cell | 1.65e-09 | 25 |
leukocyte | 3.09e-09 | 17 |
nongranular leukocyte | 3.09e-09 | 17 |
lymphocyte | 1.02e-07 | 13 |
common lymphoid progenitor | 1.02e-07 | 13 |
lymphoid lineage restricted progenitor cell | 2.29e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.82e-19 | 48 |
immune system | 2.82e-19 | 48 |
hematopoietic system | 6.29e-18 | 45 |
blood island | 6.29e-18 | 45 |
hemopoietic organ | 7.27e-12 | 29 |
immune organ | 7.27e-12 | 29 |
lateral plate mesoderm | 3.81e-10 | 87 |
respiratory system | 9.62e-10 | 42 |
mesoderm | 9.77e-10 | 120 |
mesoderm-derived structure | 9.77e-10 | 120 |
presumptive mesoderm | 9.77e-10 | 120 |
respiratory tract | 1.27e-09 | 41 |
gland of gut | 1.52e-08 | 24 |
thymus | 1.81e-08 | 23 |
neck | 1.81e-08 | 23 |
respiratory system epithelium | 1.81e-08 | 23 |
hemolymphoid system gland | 1.81e-08 | 23 |
pharyngeal epithelium | 1.81e-08 | 23 |
thymic region | 1.81e-08 | 23 |
pharyngeal gland | 1.81e-08 | 23 |
entire pharyngeal arch endoderm | 1.81e-08 | 23 |
thymus primordium | 1.81e-08 | 23 |
early pharyngeal endoderm | 1.81e-08 | 23 |
foregut | 2.49e-08 | 80 |
mixed endoderm/mesoderm-derived structure | 3.19e-08 | 35 |
pharynx | 9.90e-08 | 24 |
upper respiratory tract | 9.90e-08 | 24 |
chordate pharynx | 9.90e-08 | 24 |
pharyngeal arch system | 9.90e-08 | 24 |
pharyngeal region of foregut | 9.90e-08 | 24 |
primordium | 1.51e-07 | 134 |
bone marrow | 6.70e-07 | 16 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.