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MCL coexpression mm9:1952: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!4.94e-15!48;UBERON:0002405!4.94e-15!48;UBERON:0002390!3.55e-14!45;UBERON:0003061!3.55e-14!45;UBERON:0004119!1.13e-12!118;UBERON:0000925!1.13e-12!118;UBERON:0006595!1.13e-12!118;UBERON:0001007!3.46e-12!116;UBERON:0001555!3.46e-12!116;UBERON:0007026!3.46e-12!116;UBERON:0000077!4.97e-12!35;UBERON:0004921!8.39e-12!114;UBERON:0004177!3.48e-11!29;UBERON:0005057!3.48e-11!29;UBERON:0000926!5.44e-11!120;UBERON:0004120!5.44e-11!120;UBERON:0006603!5.44e-11!120;UBERON:0003081!7.74e-10!87;UBERON:0000490!9.98e-10!66;UBERON:0001041!2.16e-09!80;UBERON:0003408!1.73e-08!24;UBERON:0006562!2.23e-08!24;UBERON:0001557!2.23e-08!24;UBERON:0001042!2.23e-08!24;UBERON:0008814!2.23e-08!24;UBERON:0009145!2.23e-08!24;UBERON:0003929!3.05e-08!55;UBERON:0005911!4.18e-08!69;UBERON:0002370!4.34e-08!23;UBERON:0000974!4.34e-08!23;UBERON:0004807!4.34e-08!23;UBERON:0005058!4.34e-08!23;UBERON:0003351!4.34e-08!23;UBERON:0009113!4.34e-08!23;UBERON:0003295!4.34e-08!23;UBERON:0009722!4.34e-08!23;UBERON:0005562!4.34e-08!23;UBERON:0007690!4.34e-08!23;UBERON:0000072!4.56e-08!27;UBERON:0002384!1.28e-07!46;UBERON:0001004!1.69e-07!42;UBERON:0000065!3.83e-07!41
|ontology_enrichment_uberon=UBERON:0002193!4.94e-15!48;UBERON:0002405!4.94e-15!48;UBERON:0002390!3.55e-14!45;UBERON:0003061!3.55e-14!45;UBERON:0004119!1.13e-12!118;UBERON:0000925!1.13e-12!118;UBERON:0006595!1.13e-12!118;UBERON:0001007!3.46e-12!116;UBERON:0001555!3.46e-12!116;UBERON:0007026!3.46e-12!116;UBERON:0000077!4.97e-12!35;UBERON:0004921!8.39e-12!114;UBERON:0004177!3.48e-11!29;UBERON:0005057!3.48e-11!29;UBERON:0000926!5.44e-11!120;UBERON:0004120!5.44e-11!120;UBERON:0006603!5.44e-11!120;UBERON:0003081!7.74e-10!87;UBERON:0000490!9.98e-10!66;UBERON:0001041!2.16e-09!80;UBERON:0003408!1.73e-08!24;UBERON:0006562!2.23e-08!24;UBERON:0001557!2.23e-08!24;UBERON:0001042!2.23e-08!24;UBERON:0008814!2.23e-08!24;UBERON:0009145!2.23e-08!24;UBERON:0003929!3.05e-08!55;UBERON:0005911!4.18e-08!69;UBERON:0002370!4.34e-08!23;UBERON:0000974!4.34e-08!23;UBERON:0004807!4.34e-08!23;UBERON:0005058!4.34e-08!23;UBERON:0003351!4.34e-08!23;UBERON:0009113!4.34e-08!23;UBERON:0003295!4.34e-08!23;UBERON:0009722!4.34e-08!23;UBERON:0005562!4.34e-08!23;UBERON:0007690!4.34e-08!23;UBERON:0000072!4.56e-08!27;UBERON:0002384!1.28e-07!46;UBERON:0001004!1.69e-07!42;UBERON:0000065!3.83e-07!41
|tfbs_overrepresentation_for_novel_motifs=0.641384,0.402508,0.612053,0.688265,0.483253,0.704257,0.803568,0.370124,0.381467,0.489964,0.755749,0.790506,0.37041,0.81685,0.502646,0,1.02248,0.473993,0.352304,0.683591,0.570433,0.57409,0.815872,0.481455,0.620553,0.846564,0.342316,0.727368,0.535752,1.44018,0.711848,1.12823,0.471365,0.854272,0.503207,0.30022,1.16474,0.786577,1.10929,0.40068,0.478558,0.717547,0.544696,0.504971,2.22741,0.675898,0.938241,0.744678,0.162985,0.539131,1.0041,0.875451,0.282443,1.2746,1.29252,0.82458,0.549352,0.776619,0.331485,0.822375,1.10737,0.885556,0.39557,0.992216,0.8366,1.03484,1.43193,1.78579,1.1025,1.63712,0.590754,0.377213,0.205546,1.32691,0.323563,0.310084,0.318792,0.926147,1.08947,0.575233,0.37865,1.04072,0.884013,0.362446,1.20828,1.24129,0.40635,0.290918,0.943446,1.94914,1.50286,1.21342,1.14153,0.490141,0.430015,0.409166,0.367176,1.14445,0.938512,0.264911,0.460566,1.12793,1.25667,1.00472,1.00361,0.717061,1.06633,0.740267,1.42067,0.57247,0.633483,1.25851,0.576517,0.7614,1.51002,0.476467,0.143825,0.692434,1.02384,0.456123,1.33244,0.970073,0.848526,0.925183,1.56496,1.09333,0.812403,1.13449,1.43038,0.493609,1.23918,0.680176,1.40022,0.839311,1.53196,0.195549,0.650785,0.719099,1.482,2.31884,1.91709,1.43673,0.861473,1.1391,0.996781,0.718046,0.941555,2.27909,0.653418,0.485304,0.293812,0.542121,1.27621,0.416214,0.838313,1.35996,0.87653,0.516549,0.63863,0.650472,1.49167,1.20739,1.09379,0.630949,0.993294,0.830321,0.459159,0.788782,0.0824127
}}
}}

Revision as of 20:41, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:117641927..117641943,-p1@Tmc6
Mm9::chr11:79894410..79894421,-p2@Crlf3
Mm9::chr6:38304547..38304565,-p1@Zc3hav1
Mm9::chr6:38304601..38304604,-p3@Zc3hav1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system4.94e-1548
immune system4.94e-1548
hematopoietic system3.55e-1445
blood island3.55e-1445
endoderm-derived structure1.13e-12118
endoderm1.13e-12118
presumptive endoderm1.13e-12118
digestive system3.46e-12116
digestive tract3.46e-12116
primitive gut3.46e-12116
mixed endoderm/mesoderm-derived structure4.97e-1235
subdivision of digestive tract8.39e-12114
hemopoietic organ3.48e-1129
immune organ3.48e-1129
mesoderm5.44e-11120
mesoderm-derived structure5.44e-11120
presumptive mesoderm5.44e-11120
lateral plate mesoderm7.74e-1087
unilaminar epithelium9.98e-1066
foregut2.16e-0980
gland of gut1.73e-0824
pharynx2.23e-0824
upper respiratory tract2.23e-0824
chordate pharynx2.23e-0824
pharyngeal arch system2.23e-0824
pharyngeal region of foregut2.23e-0824
gut epithelium3.05e-0855
endo-epithelium4.18e-0869
thymus4.34e-0823
neck4.34e-0823
respiratory system epithelium4.34e-0823
hemolymphoid system gland4.34e-0823
pharyngeal epithelium4.34e-0823
thymic region4.34e-0823
pharyngeal gland4.34e-0823
entire pharyngeal arch endoderm4.34e-0823
thymus primordium4.34e-0823
early pharyngeal endoderm4.34e-0823
segment of respiratory tract4.56e-0827
connective tissue1.28e-0746
respiratory system1.69e-0742
respiratory tract3.83e-0741


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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