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MCL coexpression mm9:1513: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!2.12e-22!31;UBERON:0005409!4.91e-14!47;UBERON:0000344!2.08e-13!15;UBERON:0005172!3.68e-12!49;UBERON:0005173!3.68e-12!49;UBERON:0002417!3.68e-12!49;UBERON:0000916!3.68e-12!49;UBERON:0001242!5.80e-12!13;UBERON:0000060!5.80e-12!13;UBERON:0001262!5.80e-12!13;UBERON:0004786!5.80e-12!13;UBERON:0002113!4.83e-10!14;UBERON:0003918!4.83e-10!14;UBERON:0011143!4.83e-10!14;UBERON:0005095!4.83e-10!14;UBERON:0007687!4.83e-10!14;UBERON:0004119!1.78e-09!118;UBERON:0000925!1.78e-09!118;UBERON:0006595!1.78e-09!118;UBERON:0001007!2.34e-09!116;UBERON:0001555!2.34e-09!116;UBERON:0007026!2.34e-09!116;UBERON:0002107!2.84e-09!22;UBERON:0007499!2.84e-09!22;UBERON:0006925!2.84e-09!22;UBERON:0009497!2.84e-09!22;UBERON:0000015!2.84e-09!22;UBERON:0002423!2.84e-09!22;UBERON:0006235!2.84e-09!22;UBERON:0008835!2.84e-09!22;UBERON:0003894!2.84e-09!22;UBERON:0004161!2.84e-09!22;UBERON:0008836!2.84e-09!22;UBERON:0003350!7.29e-09!9;UBERON:0004808!7.29e-09!9;UBERON:0001277!7.29e-09!9;UBERON:0009854!1.22e-08!23;UBERON:0009856!1.22e-08!23;UBERON:0003104!1.83e-08!61;UBERON:0009142!1.83e-08!61;UBERON:0004921!1.90e-08!114;UBERON:0004923!2.04e-08!24;UBERON:0000485!5.17e-08!11;UBERON:0006554!5.95e-08!18;UBERON:0002365!1.53e-07!25;UBERON:0002330!1.53e-07!25;UBERON:0001008!2.57e-07!19;UBERON:0009569!4.27e-07!66
|ontology_enrichment_uberon=UBERON:0000160!2.12e-22!31;UBERON:0005409!4.91e-14!47;UBERON:0000344!2.08e-13!15;UBERON:0005172!3.68e-12!49;UBERON:0005173!3.68e-12!49;UBERON:0002417!3.68e-12!49;UBERON:0000916!3.68e-12!49;UBERON:0001242!5.80e-12!13;UBERON:0000060!5.80e-12!13;UBERON:0001262!5.80e-12!13;UBERON:0004786!5.80e-12!13;UBERON:0002113!4.83e-10!14;UBERON:0003918!4.83e-10!14;UBERON:0011143!4.83e-10!14;UBERON:0005095!4.83e-10!14;UBERON:0007687!4.83e-10!14;UBERON:0004119!1.78e-09!118;UBERON:0000925!1.78e-09!118;UBERON:0006595!1.78e-09!118;UBERON:0001007!2.34e-09!116;UBERON:0001555!2.34e-09!116;UBERON:0007026!2.34e-09!116;UBERON:0002107!2.84e-09!22;UBERON:0007499!2.84e-09!22;UBERON:0006925!2.84e-09!22;UBERON:0009497!2.84e-09!22;UBERON:0000015!2.84e-09!22;UBERON:0002423!2.84e-09!22;UBERON:0006235!2.84e-09!22;UBERON:0008835!2.84e-09!22;UBERON:0003894!2.84e-09!22;UBERON:0004161!2.84e-09!22;UBERON:0008836!2.84e-09!22;UBERON:0003350!7.29e-09!9;UBERON:0004808!7.29e-09!9;UBERON:0001277!7.29e-09!9;UBERON:0009854!1.22e-08!23;UBERON:0009856!1.22e-08!23;UBERON:0003104!1.83e-08!61;UBERON:0009142!1.83e-08!61;UBERON:0004921!1.90e-08!114;UBERON:0004923!2.04e-08!24;UBERON:0000485!5.17e-08!11;UBERON:0006554!5.95e-08!18;UBERON:0002365!1.53e-07!25;UBERON:0002330!1.53e-07!25;UBERON:0001008!2.57e-07!19;UBERON:0009569!4.27e-07!66
|tfbs_overrepresentation_for_novel_motifs=0.557864,0.087078,0.529553,0.603273,0.406364,0.618805,0.715644,0.300268,0.310789,0.115752,0.668936,0.702872,0.300533,0.728641,0.424775,0,0.930881,0.397593,0.283802,0.545768,0.489529,0.44579,0.727684,0.404661,0.537749,0.757752,0.274609,0.641282,1.15581,0.645258,0.626183,1.03545,0.395107,0.253145,0.425309,0.0566307,0.384813,0.699032,0.360612,0.328675,0.401916,0.631725,0.134724,1.09239,0.227872,0.591277,0.847828,0.658142,0.746467,0.459555,0.912738,0.786094,0.220111,1.18062,1.19842,0.73621,0.469329,0.689304,0.731291,0.734051,1.01481,0.796017,0.323911,0.901018,0.747985,0.943088,1.33705,1.68977,1.00999,1.54147,0.509047,0.30684,0.152094,1.23259,0.257421,0.245132,0.70455,0.835925,0.997094,0.494135,0.830212,0.948899,0.794502,0.293164,1.1148,0.0793594,0.0882907,0.645625,0.852952,1.85284,1.40768,1.11989,1.04863,0.412897,0.937248,0.3366,0.806207,1.05152,0.848095,0.20438,0.384901,1.03517,1.16282,0.913356,0.91226,0.631253,0.97421,0.653843,1.24825,0.491483,0.550229,1.16464,1.23956,0.674448,1.41481,0.399936,0.0998646,0.607321,0.932233,0.380707,1.23809,0.879184,0.759676,0.834976,1.46955,1.00091,0.724289,1.04166,1.33551,0.416189,1.14546,0.595426,1.3055,0.750642,1.43666,1.398,0.566955,0.633235,1.3869,2.2222,1.82084,1.34183,0.772375,1.04623,0.905521,0.632211,0.851091,2.18247,0.569503,0.408309,1.21592,0.133815,1.18223,0.343194,0.749664,1.26545,0.787153,0.438007,0.555203,0.566652,1.39653,1.11392,1.00137,0.547782,0.90208,0.741834,0.383572,1.67247,0.0513167
}}
}}

Revision as of 20:01, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:43238392..43238406,+p@chr10:43238392..43238406
+
Mm9::chr11:53842291..53842305,-p@chr11:53842291..53842305
-
Mm9::chr2:22770183..22770202,+p@chr2:22770183..22770202
+
Mm9::chr3:28594628..28594663,+p@chr3:28594628..28594663
+
Mm9::chr5:36924441..36924458,-p3@Tbc1d14


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
intestine2.12e-2231
gastrointestinal system4.91e-1447
mucosa2.08e-1315
abdomen element3.68e-1249
abdominal segment element3.68e-1249
abdominal segment of trunk3.68e-1249
abdomen3.68e-1249
intestinal mucosa5.80e-1213
anatomical wall5.80e-1213
wall of intestine5.80e-1213
gastrointestinal system mucosa5.80e-1213
kidney4.83e-1014
kidney mesenchyme4.83e-1014
upper urinary tract4.83e-1014
kidney rudiment4.83e-1014
kidney field4.83e-1014
endoderm-derived structure1.78e-09118
endoderm1.78e-09118
presumptive endoderm1.78e-09118
digestive system2.34e-09116
digestive tract2.34e-09116
primitive gut2.34e-09116
liver2.84e-0922
epithelial sac2.84e-0922
digestive gland2.84e-0922
epithelium of foregut-midgut junction2.84e-0922
anatomical boundary2.84e-0922
hepatobiliary system2.84e-0922
foregut-midgut junction2.84e-0922
hepatic diverticulum2.84e-0922
liver primordium2.84e-0922
septum transversum2.84e-0922
liver bud2.84e-0922
epithelium of mucosa7.29e-099
gastrointestinal system epithelium7.29e-099
intestinal epithelium7.29e-099
digestive tract diverticulum1.22e-0823
sac1.22e-0823
mesenchyme1.83e-0861
entire embryonic mesenchyme1.83e-0861
subdivision of digestive tract1.90e-08114
organ component layer2.04e-0824
simple columnar epithelium5.17e-0811
urinary system structure5.95e-0818
exocrine gland1.53e-0725
exocrine system1.53e-0725
renal system2.57e-0719
subdivision of trunk4.27e-0766


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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