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MCL coexpression mm9:3606: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000349!6.11e-08!3;CL:0000351!6.11e-08!3
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0003408!1.24e-20!24;UBERON:0002370!5.47e-19!23;UBERON:0000974!5.47e-19!23;UBERON:0004807!5.47e-19!23;UBERON:0005058!5.47e-19!23;UBERON:0003351!5.47e-19!23;UBERON:0009113!5.47e-19!23;UBERON:0003295!5.47e-19!23;UBERON:0009722!5.47e-19!23;UBERON:0005562!5.47e-19!23;UBERON:0007690!5.47e-19!23;UBERON:0006562!4.99e-18!24;UBERON:0001557!4.99e-18!24;UBERON:0001042!4.99e-18!24;UBERON:0008814!4.99e-18!24;UBERON:0009145!4.99e-18!24;UBERON:0000072!1.41e-15!27;UBERON:0004177!3.14e-14!29;UBERON:0005057!3.14e-14!29;UBERON:0000077!7.19e-13!35;UBERON:0007811!2.51e-12!36;UBERON:0001004!2.85e-11!42;UBERON:0000063!4.05e-11!35;UBERON:0003133!9.34e-11!24;UBERON:0000065!3.62e-10!41;UBERON:0005156!1.05e-09!26;UBERON:0000990!1.05e-09!26;UBERON:0000153!1.19e-09!43;UBERON:0000926!2.42e-09!120;UBERON:0004120!2.42e-09!120;UBERON:0006603!2.42e-09!120;UBERON:0002193!2.61e-09!48;UBERON:0002405!2.61e-09!48;UBERON:0002390!5.79e-09!45;UBERON:0003061!5.79e-09!45;UBERON:0000473!8.28e-09!14;UBERON:0000991!2.38e-08!18;UBERON:0005564!2.38e-08!18;UBERON:0003135!4.06e-08!15;UBERON:0000358!6.11e-08!3;UBERON:0000307!6.11e-08!3;UBERON:0007010!6.11e-08!3;UBERON:0003101!1.63e-07!16;UBERON:0000079!1.63e-07!16;UBERON:0004176!5.53e-07!17;UBERON:0009196!5.53e-07!17;UBERON:0009117!5.53e-07!17
}}
}}

Revision as of 20:20, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr7:147129659..147129668,+p4@Utf1
Mm9::chr7:147129680..147129693,+p3@Utf1
Mm9::chr7:147129712..147129774,+p1@Utf1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
extraembryonic cell6.11e-083
trophoblast cell6.11e-083

Uber Anatomy
Ontology termp-valuen
gland of gut1.24e-2024
thymus5.47e-1923
neck5.47e-1923
respiratory system epithelium5.47e-1923
hemolymphoid system gland5.47e-1923
pharyngeal epithelium5.47e-1923
thymic region5.47e-1923
pharyngeal gland5.47e-1923
entire pharyngeal arch endoderm5.47e-1923
thymus primordium5.47e-1923
early pharyngeal endoderm5.47e-1923
pharynx4.99e-1824
upper respiratory tract4.99e-1824
chordate pharynx4.99e-1824
pharyngeal arch system4.99e-1824
pharyngeal region of foregut4.99e-1824
segment of respiratory tract1.41e-1527
hemopoietic organ3.14e-1429
immune organ3.14e-1429
mixed endoderm/mesoderm-derived structure7.19e-1335
craniocervical region2.51e-1236
respiratory system2.85e-1142
organ segment4.05e-1135
reproductive organ9.34e-1124
respiratory tract3.62e-1041
reproductive structure1.05e-0926
reproductive system1.05e-0926
anterior region of body1.19e-0943
mesoderm2.42e-09120
mesoderm-derived structure2.42e-09120
presumptive mesoderm2.42e-09120
hemolymphoid system2.61e-0948
immune system2.61e-0948
hematopoietic system5.79e-0945
blood island5.79e-0945
testis8.28e-0914
gonad2.38e-0818
gonad primordium2.38e-0818
male reproductive organ4.06e-0815
blastocyst6.11e-083
blastula6.11e-083
cleaving embryo6.11e-083
male organism1.63e-0716
male reproductive system1.63e-0716
external genitalia5.53e-0717
indifferent external genitalia5.53e-0717
indifferent gonad5.53e-0717


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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