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MCL coexpression mm9:806: Difference between revisions

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|gostat_on_MCL_coexpression=GO:0000164;protein phosphatase type 1 complex;0.0405412808853339;108954!
|gostat_on_MCL_coexpression=GO:0000164;protein phosphatase type 1 complex;0.0405412808853339;108954!
|ontology_enrichment_celltype=CL:0000542!9.33e-09!13;CL:0000051!9.33e-09!13;CL:0000838!1.40e-08!12;CL:0000988!4.29e-08!32;CL:0002032!4.29e-08!32;CL:0000037!4.29e-08!32;CL:0000566!4.29e-08!32;CL:0000837!4.29e-08!32;CL:0000084!5.60e-08!11;CL:0000827!5.60e-08!11;CL:0000791!7.55e-07!9;CL:0000789!7.55e-07!9;CL:0002420!7.55e-07!9;CL:0002419!7.55e-07!9;CL:0000790!7.55e-07!9
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004177!4.78e-14!29;UBERON:0005057!4.78e-14!29;UBERON:0000077!2.66e-13!35;UBERON:0002193!1.42e-12!48;UBERON:0002405!1.42e-12!48;UBERON:0002390!2.14e-12!45;UBERON:0003061!2.14e-12!45;UBERON:0000072!3.88e-12!27;UBERON:0001004!4.46e-12!42;UBERON:0000065!7.84e-12!41;UBERON:0003408!8.97e-12!24;UBERON:0002370!1.40e-11!23;UBERON:0000974!1.40e-11!23;UBERON:0004807!1.40e-11!23;UBERON:0005058!1.40e-11!23;UBERON:0003351!1.40e-11!23;UBERON:0009113!1.40e-11!23;UBERON:0003295!1.40e-11!23;UBERON:0009722!1.40e-11!23;UBERON:0005562!1.40e-11!23;UBERON:0007690!1.40e-11!23;UBERON:0006562!7.89e-11!24;UBERON:0001557!7.89e-11!24;UBERON:0001042!7.89e-11!24;UBERON:0008814!7.89e-11!24;UBERON:0009145!7.89e-11!24;UBERON:0001041!8.46e-11!80;UBERON:0000926!1.00e-09!120;UBERON:0004120!1.00e-09!120;UBERON:0006603!1.00e-09!120;UBERON:0000153!4.23e-09!43;UBERON:0003081!6.44e-09!87;UBERON:0000475!9.03e-09!150;UBERON:0001048!9.47e-08!134;UBERON:0007811!1.63e-07!36
}}
}}

Revision as of 21:17, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:4824467..4824478,+p2@0610009D07Rik
Mm9::chr13:38129104..38129179,+p1@Riok1
Mm9::chr1:135028028..135028050,+p4@Ppp1r15b
Mm9::chr2:3630751..3630772,+p1@Fam107b
Mm9::chr2:3697194..3697210,+p@chr2:3697194..3697210
+
Mm9::chr6:83276065..83276079,+p2@Mob1a
Mm9::chr8:107694628..107694659,+p1@Cbfb
Mm9::chrX:48194566..48194598,+p1@2610018G03Rik
Mm9::chrX:48194611..48194626,+p2@2610018G03Rik


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0000164protein phosphatase type 1 complex0.0405412808853339



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemopoietic organ4.78e-1429
immune organ4.78e-1429
mixed endoderm/mesoderm-derived structure2.66e-1335
hemolymphoid system1.42e-1248
immune system1.42e-1248
hematopoietic system2.14e-1245
blood island2.14e-1245
segment of respiratory tract3.88e-1227
respiratory system4.46e-1242
respiratory tract7.84e-1241
gland of gut8.97e-1224
thymus1.40e-1123
neck1.40e-1123
respiratory system epithelium1.40e-1123
hemolymphoid system gland1.40e-1123
pharyngeal epithelium1.40e-1123
thymic region1.40e-1123
pharyngeal gland1.40e-1123
entire pharyngeal arch endoderm1.40e-1123
thymus primordium1.40e-1123
early pharyngeal endoderm1.40e-1123
pharynx7.89e-1124
upper respiratory tract7.89e-1124
chordate pharynx7.89e-1124
pharyngeal arch system7.89e-1124
pharyngeal region of foregut7.89e-1124
foregut8.46e-1180
mesoderm1.00e-09120
mesoderm-derived structure1.00e-09120
presumptive mesoderm1.00e-09120
anterior region of body4.23e-0943
lateral plate mesoderm6.44e-0987
organism subdivision9.03e-09150
primordium9.47e-08134
craniocervical region1.63e-0736


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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