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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.180840494114715,0.107744855247029,0,0,0.0333321253665857,0.374676111415838,0.0831986651315277,0.301635673158024,0.39632267077331,0,0.916750210201866,0.917351351299484,0.914587693946234,0.0354470656487682,1.15849150701185,1.02793610849472,0.21483582178082,0.164001280677683,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177787383341725,0,0,0,0,0,0,0,0,0,0,0,0,0,0.86780554202717,0.236880264493592,0.604749072842569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0706205532059261,0,0,0,0,0,0,0,0,0,0,0.0893284091371433,1.00271996008777,0.0263034168843749,0,0,0,0,0,0,0,0.110319863569628,0.368428331907466,0.0651189800845078,0.22076806852419,0.294411220774837,0,0,0,0.098801861608942,0.427715163864743,0.447112768205563,0.342956243976298,0,0,0,0,0,0,0,0,0.299998574286809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365800697430258,0.180325425270187,0.195436618912525,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0861996515928926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0519191528207588,0,0,0,0.0438537854956353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.093833775061694,0.0398278057593247,0.109813392994768,0.121976689400977,0,0,0.137398724818722,0.117946305307076,0,0,0,0.240302768815063,0,0,0,0,0.0136440316323445,0,0,0.0635717028550276,0.086880916817156,0.0642538110976656,0.218916923110154,0.181287491017976,0.110353348438991,0,0,0.173700201812769,0.10582914506561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0663147875126409,0,0,0,0,0,0,0,0,0,0.119268019631849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572166647999559,0.0814866010703366,0.191893350882575,0.288213953931668,0.443579783280573,0.485579982245155,0.267146409463255,0.354024468246181,0.350984098053906,0,0,0,0,0,0,0,0.034489466458534,0,0.0529304404135566,0.100000590433997,0,0,0,0,0,0,0,0,0,0,0,0.289596390303526,0.147815532899656,0.208512768087948,0.250304078488806,0.277639803678183,0.267899708397587,0.292602393023045,0.308313942349241,0.280737229706628,0.282051214834253,0.15896555548549,0.316397440896801,0.270889894994264,0.359008953458966,0,0,0,0,0,0.0747003483965965,0.0730404042754446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0386142987472755,0,0.0242538736058389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0845301845292944,0,0.0865703124974023,0.16546265671817
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.180840494114715,0.107744855247029,0,0,0.0333321253665857,0.374676111415838,0.0831986651315277,0.301635673158024,0.39632267077331,0,0.916750210201866,0.917351351299484,0.914587693946234,0.0354470656487682,1.15849150701185,1.02793610849472,0.21483582178082,0.164001280677683,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177787383341725,0,0,0,0,0,0,0,0,0,0,0,0,0,0.86780554202717,0.236880264493592,0.604749072842569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0706205532059261,0,0,0,0,0,0,0,0,0,0,0.0893284091371433,1.00271996008777,0.0263034168843749,0,0,0,0,0,0,0,0.110319863569628,0.368428331907466,0.0651189800845078,0.22076806852419,0.294411220774837,0,0,0,0.098801861608942,0.427715163864743,0.447112768205563,0.342956243976298,0,0,0,0,0,0,0,0,0.299998574286809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365800697430258,0.180325425270187,0.195436618912525,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0861996515928926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0519191528207588,0,0,0,0.0438537854956353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.093833775061694,0.0398278057593247,0.109813392994768,0.121976689400977,0,0,0.137398724818722,0.117946305307076,0,0,0,0.240302768815063,0,0,0,0,0.0136440316323445,0,0,0.0635717028550276,0.086880916817156,0.0642538110976656,0.218916923110154,0.181287491017976,0.110353348438991,0,0,0.173700201812769,0.10582914506561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0663147875126409,0,0,0,0,0,0,0,0,0,0.119268019631849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572166647999559,0.0814866010703366,0.191893350882575,0.288213953931668,0.443579783280573,0.485579982245155,0.267146409463255,0.354024468246181,0.350984098053906,0,0,0,0,0,0,0,0.034489466458534,0,0.0529304404135566,0.100000590433997,0,0,0,0,0,0,0,0,0,0,0,0.289596390303526,0.147815532899656,0.208512768087948,0.250304078488806,0.277639803678183,0.267899708397587,0.292602393023045,0.308313942349241,0.280737229706628,0.282051214834253,0.15896555548549,0.316397440896801,0.270889894994264,0.359008953458966,0,0,0,0,0,0.0747003483965965,0.0730404042754446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0386142987472755,0,0.0242538736058389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0845301845292944,0,0.0865703124974023,0.16546265671817
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!5.46e-12!32;CL:0002032!5.46e-12!32;CL:0000037!5.46e-12!32;CL:0000566!5.46e-12!32;CL:0000837!5.46e-12!32;CL:0000838!3.77e-08!12;CL:0002031!1.05e-07!25;CL:0000542!2.57e-07!13;CL:0000051!2.57e-07!13;CL:0000084!4.39e-07!11;CL:0000827!4.39e-07!11
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!1.16e-21!48;UBERON:0002405!1.16e-21!48;UBERON:0002390!5.60e-19!45;UBERON:0003061!5.60e-19!45;UBERON:0004177!4.16e-17!29;UBERON:0005057!4.16e-17!29;UBERON:0000077!7.89e-13!35;UBERON:0003408!2.54e-12!24;UBERON:0002370!1.04e-11!23;UBERON:0000974!1.04e-11!23;UBERON:0004807!1.04e-11!23;UBERON:0005058!1.04e-11!23;UBERON:0003351!1.04e-11!23;UBERON:0009113!1.04e-11!23;UBERON:0003295!1.04e-11!23;UBERON:0009722!1.04e-11!23;UBERON:0005562!1.04e-11!23;UBERON:0007690!1.04e-11!23;UBERON:0001004!2.63e-11!42;UBERON:0006562!5.43e-11!24;UBERON:0001557!5.43e-11!24;UBERON:0001042!5.43e-11!24;UBERON:0008814!5.43e-11!24;UBERON:0009145!5.43e-11!24;UBERON:0001041!5.59e-11!80;UBERON:0000065!9.38e-11!41;UBERON:0003081!9.34e-10!87;UBERON:0000072!3.60e-09!27;UBERON:0002106!4.32e-07!6;UBERON:0004457!4.32e-07!6;UBERON:0000042!4.32e-07!6;UBERON:0004854!4.32e-07!6;UBERON:0009034!4.32e-07!6;UBERON:0002095!4.32e-07!6;UBERON:0004782!4.32e-07!6;UBERON:0003281!4.32e-07!6;UBERON:0009664!4.32e-07!6;UBERON:0002296!4.32e-07!6;UBERON:0005602!4.32e-07!6;UBERON:0001179!4.32e-07!6;UBERON:0006293!4.32e-07!6;UBERON:0005911!7.49e-07!69
}}
}}

Revision as of 19:41, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:59362400..59362427,-p@chr10:59362400..59362427
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Mm9::chr11:106611499..106611516,-p7@Pecam1
Mm9::chr12:114664902..114664912,-p@chr12:114664902..114664912
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Mm9::chr12:114664978..114664991,-p@chr12:114664978..114664991
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Mm9::chr12:114664994..114665005,-p@chr12:114664994..114665005
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Mm9::chr12:114665034..114665093,-p@chr12:114665034..114665093
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Mm9::chr12:114665101..114665117,-p@chr12:114665101..114665117
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Mm9::chr12:114665127..114665158,-p@chr12:114665127..114665158
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Mm9::chr12:114665171..114665182,-p@chr12:114665171..114665182
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Mm9::chr12:114665618..114665633,-p@chr12:114665618..114665633
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Mm9::chr12:114720611..114720616,-p@chr12:114720611..114720616
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Mm9::chr14:52760662..52760683,+p@chr14:52760662..52760683
+
Mm9::chr14:70224655..70224666,-p13@Rhobtb2
Mm9::chr18:35899721..35899728,-p@chr18:35899721..35899728
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Mm9::chr18:35899760..35899782,-p@chr18:35899760..35899782
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Mm9::chr1:162237596..162237613,-p@chr1:162237596..162237613
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Mm9::chr1:195033902..195033924,+p4@Lamb3
Mm9::chr1:80661827..80661880,-p1@Dock10
Mm9::chr2:79095711..79095809,+p1@Itga4
Mm9::chr3:58905732..58905748,-p1@Gpr171
Mm9::chr6:99289369..99289380,-p@chr6:99289369..99289380
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Mm9::chr6:99289414..99289449,-p@chr6:99289414..99289449
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Mm9::chr6:99289457..99289478,-p@chr6:99289457..99289478
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Mm9::chr7:150899491..150899518,-p@chr7:150899491..150899518
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Mm9::chr9:40231017..40231077,-p@chr9:40231017..40231077
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system1.16e-2148
immune system1.16e-2148
hematopoietic system5.60e-1945
blood island5.60e-1945
hemopoietic organ4.16e-1729
immune organ4.16e-1729
mixed endoderm/mesoderm-derived structure7.89e-1335
gland of gut2.54e-1224
thymus1.04e-1123
neck1.04e-1123
respiratory system epithelium1.04e-1123
hemolymphoid system gland1.04e-1123
pharyngeal epithelium1.04e-1123
thymic region1.04e-1123
pharyngeal gland1.04e-1123
entire pharyngeal arch endoderm1.04e-1123
thymus primordium1.04e-1123
early pharyngeal endoderm1.04e-1123
respiratory system2.63e-1142
pharynx5.43e-1124
upper respiratory tract5.43e-1124
chordate pharynx5.43e-1124
pharyngeal arch system5.43e-1124
pharyngeal region of foregut5.43e-1124
foregut5.59e-1180
respiratory tract9.38e-1141
lateral plate mesoderm9.34e-1087
segment of respiratory tract3.60e-0927
spleen4.32e-076
cavity lining4.32e-076
serous membrane4.32e-076
gastrointestinal system mesentery4.32e-076
stomach region4.32e-076
mesentery4.32e-076
gastrointestinal system serosa4.32e-076
mesentery of stomach4.32e-076
gut mesentery4.32e-076
dorsal mesentery4.32e-076
dorsal mesogastrium4.32e-076
peritoneal cavity4.32e-076
spleen primordium4.32e-076
endo-epithelium7.49e-0769


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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