FFCP PHASE1:Mm9::chr11:78837007..78837027,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=6 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:78837007..78837027,- | |||
|description=CAGE_peak_at_chr11:78837007..78837027,- | |description=CAGE_peak_at_chr11:78837007..78837027,- | ||
|id=chr11:78837007..78837027,- | |id=chr11:78837007..78837027,- | ||
|ontology_enrichment_celltype=CL:0000838!4.75e-12!12;CL:0000084!5.60e-11!11;CL:0000827!5.60e-11!11;CL:0000988!6.65e-11!32;CL:0002032!6.65e-11!32;CL:0000037!6.65e-11!32;CL:0000566!6.65e-11!32;CL:0000837!6.65e-11!32;CL:0000542!8.14e-11!13;CL:0000051!8.14e-11!13;CL:0000791!2.64e-09!9;CL:0000789!2.64e-09!9;CL:0002420!2.64e-09!9;CL:0002419!2.64e-09!9;CL:0000790!2.64e-09!9;CL:0000624!2.36e-08!8;CL:0002031!1.15e-07!25;CL:0000738!2.21e-07!17;CL:0002087!2.21e-07!17 | |ontology_enrichment_celltype=CL:0000838!4.75e-12!12;CL:0000084!5.60e-11!11;CL:0000827!5.60e-11!11;CL:0000988!6.65e-11!32;CL:0002032!6.65e-11!32;CL:0000037!6.65e-11!32;CL:0000566!6.65e-11!32;CL:0000837!6.65e-11!32;CL:0000542!8.14e-11!13;CL:0000051!8.14e-11!13;CL:0000791!2.64e-09!9;CL:0000789!2.64e-09!9;CL:0002420!2.64e-09!9;CL:0002419!2.64e-09!9;CL:0000790!2.64e-09!9;CL:0000624!2.36e-08!8;CL:0002031!1.15e-07!25;CL:0000738!2.21e-07!17;CL:0002087!2.21e-07!17 | ||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.31e-15,12;CL:0000542,4.29e-14,13;CL:0000051,4.29e-14,13;CL:0000084,8.84e-13,11;CL:0000827,8.84e-13,11;CL:0000791,9.67e-12,9;CL:0000789,9.67e-12,9;CL:0002420,9.67e-12,9;CL:0002419,9.67e-12,9;CL:0000790,9.67e-12,9;CL:0000738,1.65e-10,17;CL:0002087,1.65e-10,17;CL:0000624,2.12e-09,8;CL:0002031,1.68e-08,25 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2=DOID:0060100,3.07e-11,3;DOID:4045,3.07e-11,3 | |||
|ontology_enrichment_uberon=UBERON:0004177!2.40e-18!29;UBERON:0002390!1.40e-16!45;UBERON:0003061!1.40e-16!45;UBERON:0002370!1.99e-16!23;UBERON:0000974!1.99e-16!23;UBERON:0004807!1.99e-16!23;UBERON:0005058!1.99e-16!23;UBERON:0003351!1.99e-16!23;UBERON:0009113!1.99e-16!23;UBERON:0003295!1.99e-16!23;UBERON:0009722!1.99e-16!23;UBERON:0005562!1.99e-16!23;UBERON:0007690!1.99e-16!23;UBERON:0006562!1.96e-15!24;UBERON:0003408!1.96e-15!24;UBERON:0001557!1.96e-15!24;UBERON:0001042!1.96e-15!24;UBERON:0008814!1.96e-15!24;UBERON:0009145!1.96e-15!24;UBERON:0002193!7.34e-15!48;UBERON:0000065!7.69e-14!41;UBERON:0001004!2.76e-13!42;UBERON:0000072!6.50e-13!27;UBERON:0005057!4.08e-11!51;UBERON:0002405!9.26e-11!70;UBERON:0000063!4.93e-10!35;UBERON:0003081!5.35e-08!88;UBERON:0005911!6.99e-08!69;UBERON:0001041!5.30e-07!92 | |ontology_enrichment_uberon=UBERON:0004177!2.40e-18!29;UBERON:0002390!1.40e-16!45;UBERON:0003061!1.40e-16!45;UBERON:0002370!1.99e-16!23;UBERON:0000974!1.99e-16!23;UBERON:0004807!1.99e-16!23;UBERON:0005058!1.99e-16!23;UBERON:0003351!1.99e-16!23;UBERON:0009113!1.99e-16!23;UBERON:0003295!1.99e-16!23;UBERON:0009722!1.99e-16!23;UBERON:0005562!1.99e-16!23;UBERON:0007690!1.99e-16!23;UBERON:0006562!1.96e-15!24;UBERON:0003408!1.96e-15!24;UBERON:0001557!1.96e-15!24;UBERON:0001042!1.96e-15!24;UBERON:0008814!1.96e-15!24;UBERON:0009145!1.96e-15!24;UBERON:0002193!7.34e-15!48;UBERON:0000065!7.69e-14!41;UBERON:0001004!2.76e-13!42;UBERON:0000072!6.50e-13!27;UBERON:0005057!4.08e-11!51;UBERON:0002405!9.26e-11!70;UBERON:0000063!4.93e-10!35;UBERON:0003081!5.35e-08!88;UBERON:0005911!6.99e-08!69;UBERON:0001041!5.30e-07!92 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.77e-21,23;UBERON:0000974,6.77e-21,23;UBERON:0004807,6.77e-21,23;UBERON:0005058,6.77e-21,23;UBERON:0003351,6.77e-21,23;UBERON:0009113,6.77e-21,23;UBERON:0003295,6.77e-21,23;UBERON:0009722,6.77e-21,23;UBERON:0005562,6.77e-21,23;UBERON:0007690,6.77e-21,23;UBERON:0006562,6.41e-20,24;UBERON:0003408,6.41e-20,24;UBERON:0001557,6.41e-20,24;UBERON:0001042,6.41e-20,24;UBERON:0008814,6.41e-20,24;UBERON:0009145,6.41e-20,24;UBERON:0000072,2.00e-17,27;UBERON:0004177,4.77e-16,29;UBERON:0005057,4.77e-16,29;UBERON:0000077,3.12e-15,35;UBERON:0007811,1.96e-12,36;UBERON:0002390,5.19e-11,45;UBERON:0003061,5.19e-11,45;UBERON:0000490,6.80e-11,66;UBERON:0000065,1.30e-10,41;UBERON:0001004,2.68e-10,42;UBERON:0002193,3.75e-10,48;UBERON:0002405,3.75e-10,48;UBERON:0000153,5.31e-10,43;UBERON:0003929,1.10e-08,55;UBERON:0002368,9.78e-08,60;UBERON:0002530,6.21e-07,65 | |||
|phase1_expression=0,0,0,0,0,0,0,1.93684985162364,0.703943610758334,1.17032263160997,0.68487187290202,0.239316476986009,1.19840510951844,1.48614684112296,0,0.202475267389826,0,0.788655413395594,1.09691546884591,0.42438965179803,0,0.595745707205312,1.30599894569468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.4409111995798,6.2506827561904,5.23523743973798,14.7057872007754,5.46436387966757,6.311634589405,0,0,0,0,0,0,0,0,0,2.68452169692378,2.17608642603403,1.34437519656986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.79728977403356,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0.230615497256059,0,0,0,0,0,0,0.161766849947409,1.10420759230197,0,0,0,0,0,0.479260498023681,0.599902730993408,0.762421362438388,0,0,0,0,0.255715457330331,0,0,0,0.248813941220186,0,0,0,0,0.180062129805349,0.150704817835715,0,0,0,0,0,0,0,0,0,0,0.205782136407943,0.199034266818493,0.702213187313235,0.257347907114715,0.284163499395593,0.207125772535502,0,0,0,0,0,0,0,0,0,0,0,0,0.219550115291051,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0.114248512609729,0,0,0,0.0701358198903186,0,0,0,0,0,0,0.196558995113203,0,0,0,0.25462585178142,0,0,0.274561413188081,0,0,0,0.252578877947112,0,0,0.184753190166605,0,0,0.169745085775188,0,0.335012514883631,0.238043640886014,0.390267295715598,0.630540576424764,0.664394068946325,0,0,0,0.289298117163023,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0.164140899745061,0,0,0.170870880797853,0.412773735926445,0.555583582109135,0.376736914009382,0.136694227721025,0,0.849892149969277,1.25956307091292,0.552799895217695,0,0,0,0,0.418176592028937,0,0.134864346384821,0,0,0,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0,3.16011120628178,0.608175645870493,0.718976700153791,0.77952493786677,0.716106782669926,1.98681354781265,1.20195449519969,2.65841148914239,2.62512769865184,2.66723823292499,2.41982844328417,1.8516997340553,2.11666051608725,4.44132228289962,0,0,0,0,0,0,0,0,0,0,0,0,0.171853182343688,0.685082519770642,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320919209591815,0,0,0,0,0,0,0,0,0.192909220463705,0,0,0,0.177475806159338,0,0,0.0941093804153306,0,0,0,0,0.561142271657738,0,0.29551344712669,0,0.154936841185966,0,0,0.233931608445408,0.429742108096597,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,1.93684985162364,0.703943610758334,1.17032263160997,0.68487187290202,0.239316476986009,1.19840510951844,1.48614684112296,0,0.202475267389826,0,0.788655413395594,1.09691546884591,0.42438965179803,0,0.595745707205312,1.30599894569468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.4409111995798,6.2506827561904,5.23523743973798,14.7057872007754,5.46436387966757,6.311634589405,0,0,0,0,0,0,0,0,0,2.68452169692378,2.17608642603403,1.34437519656986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.79728977403356,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0.230615497256059,0,0,0,0,0,0,0.161766849947409,1.10420759230197,0,0,0,0,0,0.479260498023681,0.599902730993408,0.762421362438388,0,0,0,0,0.255715457330331,0,0,0,0.248813941220186,0,0,0,0,0.180062129805349,0.150704817835715,0,0,0,0,0,0,0,0,0,0,0.205782136407943,0.199034266818493,0.702213187313235,0.257347907114715,0.284163499395593,0.207125772535502,0,0,0,0,0,0,0,0,0,0,0,0,0.219550115291051,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0.114248512609729,0,0,0,0.0701358198903186,0,0,0,0,0,0,0.196558995113203,0,0,0,0.25462585178142,0,0,0.274561413188081,0,0,0,0.252578877947112,0,0,0.184753190166605,0,0,0.169745085775188,0,0.335012514883631,0.238043640886014,0.390267295715598,0.630540576424764,0.664394068946325,0,0,0,0.289298117163023,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0.164140899745061,0,0,0.170870880797853,0.412773735926445,0.555583582109135,0.376736914009382,0.136694227721025,0,0.849892149969277,1.25956307091292,0.552799895217695,0,0,0,0,0.418176592028937,0,0.134864346384821,0,0,0,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0,3.16011120628178,0.608175645870493,0.718976700153791,0.77952493786677,0.716106782669926,1.98681354781265,1.20195449519969,2.65841148914239,2.62512769865184,2.66723823292499,2.41982844328417,1.8516997340553,2.11666051608725,4.44132228289962,0,0,0,0,0,0,0,0,0,0,0,0,0.171853182343688,0.685082519770642,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320919209591815,0,0,0,0,0,0,0,0,0.192909220463705,0,0,0,0.177475806159338,0,0,0.0941093804153306,0,0,0,0,0.561142271657738,0,0.29551344712669,0,0.154936841185966,0,0,0.233931608445408,0.429742108096597,0,0,0 | ||
|short_description=p@chr11:78837007..78837027,- | |short_description=p@chr11:78837007..78837027,- | ||
}} | }} |
Latest revision as of 02:31, 4 August 2015
Short description: | p@chr11:78837007..78837027, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:78837007..78837027, - |
Coexpression cluster: | MCL_coexpression_mm9:6 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.31e-15 | 12 |
lymphocyte | 4.29e-14 | 13 |
common lymphoid progenitor | 4.29e-14 | 13 |
T cell | 8.84e-13 | 11 |
pro-T cell | 8.84e-13 | 11 |
mature alpha-beta T cell | 9.67e-12 | 9 |
alpha-beta T cell | 9.67e-12 | 9 |
immature T cell | 9.67e-12 | 9 |
mature T cell | 9.67e-12 | 9 |
immature alpha-beta T cell | 9.67e-12 | 9 |
leukocyte | 1.65e-10 | 17 |
nongranular leukocyte | 1.65e-10 | 17 |
CD4-positive, alpha-beta T cell | 2.12e-09 | 8 |
hematopoietic lineage restricted progenitor cell | 1.68e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.77e-21 | 23 |
neck | 6.77e-21 | 23 |
respiratory system epithelium | 6.77e-21 | 23 |
hemolymphoid system gland | 6.77e-21 | 23 |
pharyngeal epithelium | 6.77e-21 | 23 |
thymic region | 6.77e-21 | 23 |
pharyngeal gland | 6.77e-21 | 23 |
entire pharyngeal arch endoderm | 6.77e-21 | 23 |
thymus primordium | 6.77e-21 | 23 |
early pharyngeal endoderm | 6.77e-21 | 23 |
pharynx | 6.41e-20 | 24 |
gland of gut | 6.41e-20 | 24 |
upper respiratory tract | 6.41e-20 | 24 |
chordate pharynx | 6.41e-20 | 24 |
pharyngeal arch system | 6.41e-20 | 24 |
pharyngeal region of foregut | 6.41e-20 | 24 |
segment of respiratory tract | 2.00e-17 | 27 |
hemopoietic organ | 4.77e-16 | 29 |
immune organ | 4.77e-16 | 29 |
mixed endoderm/mesoderm-derived structure | 3.12e-15 | 35 |
craniocervical region | 1.96e-12 | 36 |
hematopoietic system | 5.19e-11 | 45 |
blood island | 5.19e-11 | 45 |
unilaminar epithelium | 6.80e-11 | 66 |
respiratory tract | 1.30e-10 | 41 |
respiratory system | 2.68e-10 | 42 |
hemolymphoid system | 3.75e-10 | 48 |
immune system | 3.75e-10 | 48 |
anterior region of body | 5.31e-10 | 43 |
gut epithelium | 1.10e-08 | 55 |
endocrine gland | 9.78e-08 | 60 |
gland | 6.21e-07 | 65 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 3.07e-11 | 3 |
muscle cancer | 3.07e-11 | 3 |