FFCP PHASE1:Mm9::chr1:58852306..58852403,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr1:58852306..58852403,+ to FFCP PHASE1:Mm9::chr1:58852306..58852403,+: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=12370 | |EntrezGene=12370 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=O89110,Q3U607 | |UniProt=O89110,Q3U607 | ||
|association_with_transcript=88bp_to_ENSMUST00000027189,NM_009812,uc007bcs.1_5end | |||
|cluster_id=chr1:58852306..58852403,+ | |||
|description=CAGE_peak_2_at_Casp8_5end | |||
|id=chr1:58852306..58852403,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.70e-09!25;CL:0000223!1.75e-09!20;CL:0000063!7.18e-09!66;CL:0002076!3.30e-08!15;CL:0002563!9.88e-07!9;CL:0002251!9.88e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.61e-09,25;CL:0000223,1.65e-09,20;CL:0002076,3.15e-08,15;CL:0002563,9.53e-07,9;CL:0002251,9.53e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!3.05e-29!128;UBERON:0001555!3.05e-29!128;UBERON:0007026!3.05e-29!128;UBERON:0004119!8.05e-29!130;UBERON:0000925!8.05e-29!130;UBERON:0006595!8.05e-29!130;UBERON:0004921!9.54e-28!126;UBERON:0004185!9.54e-28!126;UBERON:0005409!5.87e-19!59;UBERON:0000160!1.61e-17!43;UBERON:0003104!2.72e-12!131;UBERON:0009142!2.72e-12!131;UBERON:0000077!4.54e-11!97;UBERON:0000344!1.07e-10!15;UBERON:0001041!1.48e-10!92;UBERON:0005911!1.85e-09!69;UBERON:0001242!2.08e-09!13;UBERON:0000060!2.08e-09!13;UBERON:0001262!2.08e-09!13;UBERON:0004786!2.08e-09!13;UBERON:0003929!1.44e-08!55;UBERON:0004923!2.87e-08!24;UBERON:0000490!3.89e-08!66;UBERON:0009569!5.31e-07!66;UBERON:0000926!7.26e-07!193;UBERON:0004120!7.26e-07!193;UBERON:0006603!7.26e-07!193;UBERON:0003350!9.88e-07!9;UBERON:0004808!9.88e-07!9;UBERON:0001277!9.88e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,1.11e-26,116;UBERON:0001555,1.11e-26,116;UBERON:0007026,1.11e-26,116;UBERON:0004119,3.09e-26,118;UBERON:0000925,3.09e-26,118;UBERON:0006595,3.09e-26,118;UBERON:0004921,3.01e-25,114;UBERON:0005409,8.26e-18,47;UBERON:0000160,3.79e-17,31;UBERON:0000344,1.01e-10,15;UBERON:0002100,5.71e-10,90;UBERON:0005911,1.75e-09,69;UBERON:0001242,1.97e-09,13;UBERON:0001262,1.97e-09,13;UBERON:0004786,1.97e-09,13;UBERON:0001041,7.36e-09,80;UBERON:0005177,8.69e-09,79;UBERON:0003929,1.37e-08,55;UBERON:0004923,2.74e-08,24;UBERON:0000490,3.71e-08,66;UBERON:0009569,5.12e-07,66;UBERON:0003350,9.53e-07,9;UBERON:0004808,9.53e-07,9;UBERON:0001277,9.53e-07,9 | |||
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|phase1_expression=1.44133962394315,201.707785615551,175.174707164971,68.6593759666504,80.1433167914156,64.2977611422538,69.6165668974667,27.7615145399389,24.3564489322383,22.0020654742674,3.4243593645101,2.15384829287408,18.8320802924326,21.9425210071683,5.3297561890506,7.28910962603373,4.89693314689703,19.5586542522107,15.76815986466,11.0341309467488,6.97354979238772,24.3262830442169,25.5975793356157,97.5953779039781,103.234176480227,173.992285126851,144.736030709449,156.432114929955,167.220609121609,112.405437872929,179.823444141452,0.635030673459631,0,0,52.2821431749807,47.3768739271703,44.5089196651965,6.69650609179052,11.720030167857,11.5175223674236,2.94115744015507,4.78131839470912,4.85510353031154,16.1147927008739,12.9762471960979,13.9495531642878,0,0.436050312760893,0.878744730937887,0.388859798148567,1.81982348112971,0,11.5769998179838,16.6833292662609,12.0993767691287,6.94600477297057,7.16333599846892,6.18806510732931,0.404632921719196,0,0,2.03306719241479,1.77858959222228,4.94944844504769,8.89979726310277,6.3943210345149,1.19840044207362,1.53687322128622,0.311068836925433,0.405017814995072,0.630974884054146,0.571301968807607,0.662605622854841,0,0,0,0,0.510749352340751,0.307213066512487,0.131886287730194,0.365950574409639,0,1.3959149950069,0,0.45839474333043,1.17851434189467,0.996601765593721,0,1.66597625333005,3.70300644523249,39.7114349521299,14.6272059086836,12.9194553404473,19.9690180905992,13.6453047664011,15.6809410484067,9.97155382935438,24.2011058060842,17.9252343175979,15.9002808529653,1.83096445709685,19.2489716121477,17.8363667794652,7.11066703153331,29.6592726185363,28.8830246641612,32.8590889259609,34.5977155548752,50.2339494275513,7.57054909230606,4.3371331691534,3.04465478312141,3.22861696158482,3.91878865436819,5.64425794251383,4.90099706185734,7.16865406429684,13.158541479712,7.07688441559899,4.04417124868523,6.8460870722722,5.81850303762267,68.9649516507052,0.585561594023094,0.41889341362691,83.0235429427922,18.2118989248999,11.3981518888747,13.8506547509641,0.748953197024114,0.915001205637253,0.251308704225729,0.347648640384553,1.02286182932132,0.62336413367868,0.648965052271031,6.92507674182151,12.5651040316194,22.492325500597,2.31486041475121,1.69156575851515,2.29902104433473,1.98068342785884,1.65775299619287,1.49680298132921,2.43416068541215,2.34254311399322,1.81092359517311,1.5089759505299,2.26927296201383,2.28736461413134,2.41115305670332,4.17070873838397,6.96504333044333,7.81972118350185,4.77682240364384,14.7464769335779,11.5806558201622,12.5031939734061,3.10688658803253,4.45599513964083,3.06105504483725,3.78791576936336,3.34499193970586,2.46827380619805,1.86027155800326,1.60964040839772,3.03589890154641,2.46839774870221,3.447516745661,1.78351381000883,2.04679982395465,4.17145219052996,3.89198614405078,0.841159794256509,0.92614151141356,153.314315304482,81.7152250990352,4.26576501070468,8.12828351511535,15.3352278973291,28.6390604965146,40.6951820236113,44.893247762564,73.0774754778548,52.7036655116835,45.9943432104493,47.9485097619174,53.0302316964007,77.2984691442631,71.7578325583985,72.686564737844,5.69003702859245,10.1681176222659,11.270773567308,13.6446389656361,11.4431967428899,12.8348550399283,20.7415841767564,15.3514553898786,16.7988638790271,25.1730214400473,17.4907049981418,3.50374722003798,3.73462090715086,3.82265591054251,5.07150303471257,6.99413763282009,7.89340140522401,10.0693648107784,21.4018499343047,25.2596500133035,38.8174157623857,24.9334434937897,32.4519180039143,32.5826752551774,28.8829835770279,15.9206362049911,11.2699446001629,3.03186258832776,7.98528384565927,9.84521497496091,10.5610611729826,11.7254380209271,9.52174563544055,7.41507861859636,13.7142575372386,12.4020226203314,11.1618338060241,9.34020893879707,11.3972088031491,12.43981903801,15.0791283939272,19.5806046174735,8.35999264132362,7.45029215022778,0.481651769963376,0.468846746368813,9.18035694109382,4.54447668967871,3.47059041357882,0.390438744296638,3.01592756825919,3.58453196928828,1.78238939265915,3.67999490025482,2.83367491172426,0.584511715822624,2.37172666767914,0.321321316421807,7.52282451603824,2.49291845134157,4.23506094319298,15.6721616823909,3.98235415019888,14.3240575331439,15.7208249621671,11.6935149448657,7.97315110778086,12.604841065701,22.4832615056352,17.8131527443978,12.83390562185,10.7452497698177,10.5418608574999,10.3135543248187,5.10659408630682,2.16073312837572,1.94038025674132,3.85806663056866,4.43350584105684,3.56737635204141,4.11372551505302,3.65357938937519,9.1521966144847,2.75381692122966,14.5548742716275,20.281009111802,12.1098320021929,9.04693873922338,8.23669173621642,5.58079059133208,60.3365331823791,1.11255181206306,7.86006051670122,7.84270098260245,9.07453184111587,9.41842285023455,8.33834789098253,9.15112692826091,14.9581018394593,15.6745626602497,11.746997773376,27.6854479224383,5.53587988766987,10.1659733563424,13.9326889660124,11.0816796887668,13.1017538247707,14.5653494095606,19.1756017282779,14.9200886930897,50.031379690632,16.1548221402601,1.12738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| ||
|short_description=p2@Casp8 | |||
}} | }} |
Latest revision as of 06:20, 27 September 2015
Short description: | p2@Casp8 |
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Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Casp8_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 88bp_to_ENSMUST00000027189, NM_009812, uc007bcs.1_5end |
EntrezGene: | Casp8 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.61e-09 | 25 |
endodermal cell | 1.65e-09 | 20 |
endo-epithelial cell | 3.15e-08 | 15 |
intestinal epithelial cell | 9.53e-07 | 9 |
epithelial cell of alimentary canal | 9.53e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
digestive system | 1.11e-26 | 116 |
digestive tract | 1.11e-26 | 116 |
primitive gut | 1.11e-26 | 116 |
endoderm-derived structure | 3.09e-26 | 118 |
endoderm | 3.09e-26 | 118 |
presumptive endoderm | 3.09e-26 | 118 |
subdivision of digestive tract | 3.01e-25 | 114 |
gastrointestinal system | 8.26e-18 | 47 |
intestine | 3.79e-17 | 31 |
mucosa | 1.01e-10 | 15 |
trunk | 5.71e-10 | 90 |
endo-epithelium | 1.75e-09 | 69 |
intestinal mucosa | 1.97e-09 | 13 |
wall of intestine | 1.97e-09 | 13 |
gastrointestinal system mucosa | 1.97e-09 | 13 |
foregut | 7.36e-09 | 80 |
trunk region element | 8.69e-09 | 79 |
gut epithelium | 1.37e-08 | 55 |
organ component layer | 2.74e-08 | 24 |
unilaminar epithelium | 3.71e-08 | 66 |
subdivision of trunk | 5.12e-07 | 66 |
epithelium of mucosa | 9.53e-07 | 9 |
gastrointestinal system epithelium | 9.53e-07 | 9 |
intestinal epithelium | 9.53e-07 | 9 |