FFCP PHASE1:Hg19::chr9:137735933..137735964,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:137735933..137735964,+ to FFCP PHASE1:Hg19::chr9:137735933..137735964,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr9:137735933..137735964,+ | |||
|coexpression_cluster_id=C396 | |||
|description=CAGE_peak_at_chr9:137735933..137735964,+ | |||
|id=chr9:137735933..137735964,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.54e-24!180;CL:0000057!1.15e-15!75;CL:0002334!3.84e-09!12;CL:0000144!4.74e-09!625;CL:0002371!5.55e-09!591;CL:0000680!7.23e-08!57;CL:0000056!7.23e-08!57;CL:0000355!7.23e-08!57;CL:0000048!1.59e-07!430;CL:0000183!2.48e-07!59;CL:0000187!4.37e-07!54;CL:0000548!4.49e-07!679;CL:0000004!4.49e-07!679;CL:0000255!4.49e-07!679;CL:0000012!5.19e-07!682;CL:0002570!7.37e-07!8;CL:0000499!7.41e-07!27;CL:0000723!7.53e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.27e-14;19!CL:0000134;3.58e-13;55!CL:0000048;2.27e-12;58!CL:0000723;9.18e-12;61!CL:0002620;2.87e-11;23!CL:0002334;3.72e-11;12!CL:0002570;4.76e-10;8!CL:0002320;2.26e-08;188!CL:0000034;4.58e-08;69!CL:0000057;1.48e-07;73!CL:0002580;5.83e-07;3!CL:0002615;7.72e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.22e-19,76;CL:0000134,5.99e-15,354;CL:0002320,7.71e-15,361;CL:0000048,1.39e-14,427;CL:0000349,2.72e-14,19;CL:0000723,4.93e-14,433;CL:0000034,2.51e-13,441;CL:0000219,1.10e-11,386;CL:0002334,3.67e-11,12;CL:0002620,4.16e-11,23;CL:0002570,4.50e-10,8;CL:0000136,1.67e-08,15;CL:0002580,5.73e-07,3;CL:0002615,7.58e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!6.02e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:17;1.10e-08;5!DOID:450;1.10e-08;5!DOID:66;1.10e-08;5!DOID:423;1.10e-08;5!DOID:0080000;1.10e-08;5!DOID:11722;1.10e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.08e-08,5;DOID:450,1.08e-08,5;DOID:66,1.08e-08,5;DOID:423,1.08e-08,5;DOID:0080000,1.08e-08,5;DOID:11722,1.08e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000478!1.07e-09!24;UBERON:0005631!5.48e-09!14;UBERON:0000158!5.48e-09!14;UBERON:0001134!6.68e-08!61;UBERON:0002036!6.68e-08!61;UBERON:0003082!6.68e-08!61;UBERON:0002385!1.19e-07!63;UBERON:0001015!1.19e-07!63;UBERON:0000383!1.19e-07!63;UBERON:0001013!4.53e-07!14;UBERON:0004923!5.28e-07!57;UBERON:0000914!7.48e-07!83;UBERON:0002329!7.48e-07!83;UBERON:0003077!7.48e-07!83;UBERON:0003059!7.48e-07!83;UBERON:0007282!7.48e-07!83;UBERON:0009618!7.48e-07!83;UBERON:0007285!7.48e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;8.57e-13;24!UBERON:0003688;6.54e-12;6!UBERON:0002358;6.54e-12;6!UBERON:0003684;6.54e-12;6!UBERON:0001178;6.54e-12;6!UBERON:0001013;1.07e-10;14!UBERON:0004457;9.01e-10;9!UBERON:0000042;9.01e-10;9!UBERON:0002384;3.25e-08;198!UBERON:0005631;4.26e-07;10!UBERON:0000158;4.26e-07;10!UBERON:0003104;9.97e-07;7!UBERON:0009142;9.97e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.54e-15,371;UBERON:0000478,1.62e-12,24;UBERON:0003688,6.73e-12,6;UBERON:0002358,6.73e-12,6;UBERON:0003684,6.73e-12,6;UBERON:0001178,6.73e-12,6;UBERON:0001013,8.08e-11,14;UBERON:0005631,8.77e-10,14;UBERON:0000158,8.77e-10,14;UBERON:0002199,3.69e-08,46;UBERON:0002416,3.69e-08,46;UBERON:0002097,1.68e-07,41;UBERON:0004457,4.59e-07,12;UBERON:0000042,4.59e-07,12;UBERON:0004923,8.73e-07,66 | |||
|phase1_expression=2.18014055124668,5.1384125733836,4.79244973926302,7.00513088471913,4.46961094427288,2.61701557230111,2.53299878168311,0,0.261185628199839,0.245733936501509,0.697801167972428,0.655324116390517,1.58260186937072,0.37129905888014,0.331397375727916,0,0.602694528023977,1.46062018077475,0.487932798790507,0.492484232307152,0.408001382488506,0.940364164434263,0.572471974262113,0.136874425072884,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.511450247374121,2.89151321907653,0.50133791063589,2.462390822334,8.74814541756209,8.75942766544745,0.189069634328136,0.443458794925128,0.527008714158756,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0.56530794192401,1.25849830862972,0.275118041940067,0,0,0,0,0,0,0,0.367663080345869,0,0,0,0,1.53316637465883,0,0,0,0,0,6.46063537203914,3.03913227994991,0.926864265692532,7.17091551872034,0,0.560677600142307,3.20246987189115,4.19334832309172,0,0.134710672069688,0.326923806226917,2.72443369760877,2.88087962239999,0,0,0,0,0.117434498643765,0,0,0.204154171254893,0,0.103325781175765,0,1.23633464639278,0,0.718618141816238,0,0.125118519871964,0.277064115484183,0.438977620880838,0,0.45071417671979,1.02088964844019,3.58779271377724,2.56268866582281,2.96704661623387,2.70081986475962,1.03052529238439,3.09168648054755,1.30281799432113,2.36286865137773,2.53336213419116,2.77677151668526,1.47279837827679,2.10139873864455,3.55009592516614,1.10827308050404,0.67824236924195,0,0,0,0,0,0.232387885739037,0,0,0.36497735907583,0,1.92972281457866,0,0,0,0.236613600079688,0.337169380156203,0.964044119533928,0.330881918197182,0.435758888184812,0.237270619111097,0.134831308160164,0.588664395376038,0,0,2.80483547606892,0.4115740113314,5.88034845542168,0,0,0,0,0,0.686271241194102,0,0,0,0,0,0,1.44331342025273,0.115930404975077,0.939269553886573,0,0,0,0,0,0,0,0,0,0.671928512795438,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0,0.43596006883328,0.22001485746285,3.10252117818667,3.57656445851882,4.22651376278,0.531876233169741,1.04007436911366,0.257207374262142,0,0,2.85955987316295,20.6196210048748,2.46972101034231,0.65147236858747,3.909311436168,0,0.301439377059586,0,0.399891964728228,0,0,0,0.958499421966331,2.29723871668228,0,0.723906533337896,0.821905290201534,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0.414415513436035,0.12269149171914,0.500170521059677,0,1.87173775377726,1.60586089917446,1.73472656537328,1.99140405487612,1.50473049863859,0,0,1.32845119707087,0.553107505625109,0.434418072340414,0.783204629850962,1.71571711905428,0,0,0,1.21251028578504,3.32870879020994,3.32629322662648,6.4508030032882,6.90578879796281,8.98112302185835,3.07533958213682,3.58195074346692,9.32952742632923,2.96836132889982,0.462629081407967,1.77561725313127,0.574890092096664,1.03850885836724,0.464841513839837,0,0,0,1.26295892981067,0.182091168006717,0.131124414959424,0,0,0,0,0.105551628892876,0,0,0.863663664408557,0,0.270946437543853,0,0,0,0,0,0,0,0,0.325378394664303,0.206082023295445,0.457847324091717,0.577566499444116,0,0,0,0.386682873168488,0.308097234229289,0.460511024178389,0.137836572484531,0.859361958946189,0.290033387828457,0.255679882248303,1.4245125703478,0.330569830721956,0,0.255225424989168,0,0.464845549297286,9.75918275174984,0.6970372701606,0.308033580176089,0.532306030317022,0,0.37064843820784,0.143124886741991,0,0,1.14378116354295,0.255897791311334,0.42793898803392,0,0,1.79872457583315,0.823611089208164,0.589062011728432,0.404364963146632,1.58510321173008,0,1.46290121726877,0,0,0.545999645631943,1.83827061539827,0,0.551365343546124,0,0.438450885253763,0.578775534266688,0,0.811641507850816,0.6196469961995,0,0.430234056612155,2.45622602532803,1.78335525740625,0,0.633322905892992,1.97576935775941,0.379473173765715,0.349934720244983,0,0,0,0,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0.28853842595289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,1.43246690842614,1.78178808499583,3.07160702099232,0,0,0.222617410045812,0,0,0,0,0,0.306806047506464,0,2.17727711363265,0,0,0,0.197286811273867,0,0,0,0,1.99613798001194,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.307801034015188,0.683652335082007,0,0.269272933229316,0,0.957003479195758,1.09917112082235,8.52855641629816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0.687944129886466,0.387025325156341,0,0.0821154570532092,0.193978032976839,0,0.677942222341597,0,0,0,0.195551382734803,0,0,1.9980960958213,0,0,0,0,0,0,0.815425236441684,0.523014231561666,0.203996435272644,0,0,0,0,0.429765441419957,0,0.558564802544508,0.229160424011684,0,0,0,0,0.403100834920358,2.52209918479682,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0.1573637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| 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| ||
|short_description=p@chr9:137735933..137735964,+ | |||
}} | }} |
Latest revision as of 00:07, 1 August 2015
Short description: | p@chr9:137735933..137735964, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:137735933..137735964, + |
Coexpression cluster: | C396_Mesenchymal_Chondrocyte_Smooth_Preadipocyte_Placental_Fibroblast_Hepatic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.22e-19 | 76 |
mesenchymal cell | 5.99e-15 | 354 |
connective tissue cell | 7.71e-15 | 361 |
multi fate stem cell | 1.39e-14 | 427 |
extraembryonic cell | 2.72e-14 | 19 |
somatic stem cell | 4.93e-14 | 433 |
stem cell | 2.51e-13 | 441 |
motile cell | 1.10e-11 | 386 |
preadipocyte | 3.67e-11 | 12 |
skin fibroblast | 4.16e-11 | 23 |
mesenchymal stem cell of adipose | 4.50e-10 | 8 |
fat cell | 1.67e-08 | 15 |
preadipocyte of the breast | 5.73e-07 | 3 |
adipocyte of omentum tissue | 7.58e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.54e-15 | 371 |
extraembryonic structure | 1.62e-12 | 24 |
omentum | 6.73e-12 | 6 |
peritoneum | 6.73e-12 | 6 |
abdominal cavity | 6.73e-12 | 6 |
visceral peritoneum | 6.73e-12 | 6 |
adipose tissue | 8.08e-11 | 14 |
extraembryonic membrane | 8.77e-10 | 14 |
membranous layer | 8.77e-10 | 14 |
integument | 3.69e-08 | 46 |
integumental system | 3.69e-08 | 46 |
skin of body | 1.68e-07 | 41 |
cavity lining | 4.59e-07 | 12 |
serous membrane | 4.59e-07 | 12 |
organ component layer | 8.73e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.08e-08 | 5 |
myotonic disease | 1.08e-08 | 5 |
muscle tissue disease | 1.08e-08 | 5 |
myopathy | 1.08e-08 | 5 |
muscular disease | 1.08e-08 | 5 |
myotonic dystrophy | 1.08e-08 | 5 |