FFCP PHASE1:Hg19::chr9:123165410..123165421,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55755 | |EntrezGene=55755 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=18672 | |HGNC=18672 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-116bp_to_AF087969_5end | |||
|cluster_id=chr9:123165410..123165421,- | |||
|description=CAGE_peak_14_at_CDK5RAP2_5end | |||
|id=chr9:123165410..123165421,- | |||
|ontology_enrichment_celltype=CL:0000057!4.02e-12!75;CL:0000055!4.63e-12!180;CL:0002320!4.16e-10!365;CL:0000144!8.90e-10!625;CL:0000048!9.16e-10!430;CL:0000723!2.61e-09!436;CL:0000034!9.98e-09!444;CL:0000548!1.55e-08!679;CL:0000004!1.55e-08!679;CL:0000255!1.55e-08!679;CL:0000012!2.35e-08!682;CL:0002371!2.85e-08!591;CL:0002540!1.37e-07!6;CL:0000134!1.85e-07!358;CL:0000515!3.17e-07!4;CL:0000188!4.78e-07!9;CL:0002057!6.05e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000188;2.29e-18;9!CL:0000680;1.90e-15;7!CL:0002602;1.15e-14;2!CL:0002367;3.77e-14;2!CL:0002540;1.15e-10;6!CL:0002564;2.47e-10;3!CL:0000594;9.79e-10;3!CL:0000319;1.71e-08;1!CL:0000228;6.40e-08;1!CL:0002372;6.40e-08;1!CL:0000056;1.12e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,1.51e-18,9;CL:0002602,7.40e-15,2;CL:0002367,4.04e-14,2;CL:0002540,1.43e-10,6;CL:0002564,2.53e-10,3;CL:0000594,1.07e-09,3;CL:0000319,1.77e-08,1;CL:0000228,4.71e-08,1;CL:0002372,4.71e-08,1;CL:0000515,9.32e-08,4 | |||
|ontology_enrichment_development_v019=CL:0000515;1.12e-07;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3030;1.71e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,1.77e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0002384!7.66e-10!375;UBERON:0002204!8.42e-09!167;UBERON:0002200!1.23e-07!11;UBERON:0006876!1.23e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;2.18e-22;5!UBERON:0002216;2.18e-22;5!UBERON:0011134;2.18e-22;5!UBERON:0002209;2.18e-22;5!UBERON:0002213;2.18e-22;5!UBERON:0007844;2.18e-22;5!UBERON:0011138;2.18e-22;5!UBERON:0001130;2.18e-22;5!UBERON:0001066;2.18e-22;5!UBERON:0001468;2.18e-22;5!UBERON:0004765;1.10e-15;26!UBERON:0006444;1.15e-14;2!UBERON:0001995;1.15e-14;2!UBERON:0004715;1.15e-14;2!UBERON:0001134;1.37e-14;16!UBERON:0002036;1.37e-14;16!UBERON:0005969;3.77e-14;2!UBERON:0003956;3.77e-14;2!UBERON:0004905;4.57e-14;8!UBERON:0000982;4.57e-14;8!UBERON:0004770;4.57e-14;8!UBERON:0002204;1.90e-10;70!UBERON:0002242;2.47e-10;3!UBERON:0002418;4.47e-10;3!UBERON:0004755;4.47e-10;3!UBERON:0002371;3.24e-09;12!UBERON:0007195;2.90e-08;1!UBERON:0001434;2.28e-07;36!UBERON:0002385;2.56e-07;31!UBERON:0001015;2.56e-07;31!UBERON:0000383;2.56e-07;31!UBERON:0000075;4.39e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,1.58e-22,5;UBERON:0002216,1.58e-22,5;UBERON:0011134,1.58e-22,5;UBERON:0002209,1.58e-22,5;UBERON:0002213,1.58e-22,5;UBERON:0005856,1.58e-22,5;UBERON:0005866,1.58e-22,5;UBERON:0005863,1.58e-22,5;UBERON:0007844,1.58e-22,5;UBERON:0011138,1.58e-22,5;UBERON:0001130,1.58e-22,5;UBERON:0001066,1.58e-22,5;UBERON:0001468,1.58e-22,5;UBERON:0006444,7.40e-15,2;UBERON:0001995,7.40e-15,2;UBERON:0004715,7.40e-15,2;UBERON:0004905,3.75e-14,8;UBERON:0000982,3.75e-14,8;UBERON:0004770,3.75e-14,8;UBERON:0005969,4.04e-14,2;UBERON:0003956,4.04e-14,2;UBERON:0002242,2.53e-10,3;UBERON:0003068,2.53e-10,3;UBERON:0002328,2.53e-10,3;UBERON:0004880,2.53e-10,3;UBERON:0002418,3.33e-10,3;UBERON:0004755,3.33e-10,3;UBERON:0002204,2.31e-09,167;UBERON:0004765,2.21e-08,90;UBERON:0007195,2.90e-08,1;UBERON:0001434,2.44e-07,100;UBERON:0000075,3.99e-07,16 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,3.79031924056099,0,0,0,0,0,4.57935505952172,1.65698687863958,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,1.13362783106643,0,0.697287110717054,0.822335776043652,0.309706370895104,0.28769239232215,0.512321413058201,0.47296445977717,0,0,0,0,0.272906150057846,0,0.306083892370903,0,0,1.9791078011203,0.398927315243264,0,0.290209238628584,1.13477044938228,0,0,0,0.434377689410233,0.605399502633369,1.10483290796269,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579386075843295,0.795285947051099,0,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0.49333509683432,0.311211035399766,0,0.163461903113459,0.302714855289863,0,0.234321431833797,0,0,0,0,0,0.140450806702248,0.204154171254893,0.245668634623536,0.309977343527296,0,0.247266929278557,0,0,0,0.250237039743928,0,0,0,0.150238058906597,0,0.179389635688862,0.427114777637135,1.48352330811693,0,0.206105058476878,0,0.18611685633159,0,0.0974370051611986,0.252433774244115,0.368199594569197,0.161646056818812,0,0.403008392910561,0.67824236924195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0.325808305310325,1.03993478527958,0,0,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,3.34369586540785,1.41849132023278,1.0656887160644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0.579125226670317,2.87666851570537,0.179060963239896,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,2.08575535922538,7.50255781589516,0.813795071099207,0.207970861530807,0.356857977594324,0,0.234282829985426,0.601892199455438,0,0,0.664225598535437,0.737476674166813,0,1.76221041716467,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0.308419387605311,0.355123450626254,0.821271560138091,0,0.348631135379878,0,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.38906957652218,1.99554777143968,0,0.751941714077915,1.16013355131383,1.19317278382541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0.571890581771475,0.255897791311334,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0.243713489631284,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,1.13841952129715,1.39973888097993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15362711958732,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0.160317640503067,0,0,0,0,0,0,0,0,0,0.104602846312333,1.32597682927218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537862017998534,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0.684347351537318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34329322598187,0,1.10961172300523,0,0.50313580350515,0.889811221596536,0,0.302461847526478,0.466311601748341,0.147855149989634,0,0,0,0,0,0,0,0,0.406870733204662,0.363697318405119,0,0,0,0,0.343395705182793,0,0,0,0,0,0.226705925512272,0,0,0,0.926404341482917,0,0,0.192914038270915,0,0,3.79973375904318,0.607719912354764,0,0,0,0,0,7.37318726261158,0,0.39997479170986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353909170043221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0.342976018874837,0,0.0657727735628491,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,3.79031924056099,0,0,0,0,0,4.57935505952172,1.65698687863958,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,1.13362783106643,0,0.697287110717054,0.822335776043652,0.309706370895104,0.28769239232215,0.512321413058201,0.47296445977717,0,0,0,0,0.272906150057846,0,0.306083892370903,0,0,1.9791078011203,0.398927315243264,0,0.290209238628584,1.13477044938228,0,0,0,0.434377689410233,0.605399502633369,1.10483290796269,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579386075843295,0.795285947051099,0,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0.49333509683432,0.311211035399766,0,0.163461903113459,0.302714855289863,0,0.234321431833797,0,0,0,0,0,0.140450806702248,0.204154171254893,0.245668634623536,0.309977343527296,0,0.247266929278557,0,0,0,0.250237039743928,0,0,0,0.150238058906597,0,0.179389635688862,0.427114777637135,1.48352330811693,0,0.206105058476878,0,0.18611685633159,0,0.0974370051611986,0.252433774244115,0.368199594569197,0.161646056818812,0,0.403008392910561,0.67824236924195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0.325808305310325,1.03993478527958,0,0,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0,0,0,0,0,3.34369586540785,1.41849132023278,1.0656887160644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0.579125226670317,2.87666851570537,0.179060963239896,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,2.08575535922538,7.50255781589516,0.813795071099207,0.207970861530807,0.356857977594324,0,0.234282829985426,0.601892199455438,0,0,0.664225598535437,0.737476674166813,0,1.76221041716467,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0.308419387605311,0.355123450626254,0.821271560138091,0,0.348631135379878,0,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.38906957652218,1.99554777143968,0,0.751941714077915,1.16013355131383,1.19317278382541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0.571890581771475,0.255897791311334,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0.243713489631284,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,1.13841952129715,1.39973888097993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15362711958732,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0.160317640503067,0,0,0,0,0,0,0,0,0,0.104602846312333,1.32597682927218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537862017998534,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0.684347351537318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34329322598187,0,1.10961172300523,0,0.50313580350515,0.889811221596536,0,0.302461847526478,0.466311601748341,0.147855149989634,0,0,0,0,0,0,0,0,0.406870733204662,0.363697318405119,0,0,0,0,0.343395705182793,0,0,0,0,0,0.226705925512272,0,0,0,0.926404341482917,0,0,0.192914038270915,0,0,3.79973375904318,0.607719912354764,0,0,0,0,0,7.37318726261158,0,0.39997479170986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353909170043221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0.342976018874837,0,0.0657727735628491,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p14@CDK5RAP2 | |||
}} | }} |
Latest revision as of 19:09, 24 September 2015
Short description: | p14@CDK5RAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_CDK5RAP2_5end |
Coexpression cluster: | NA |
Association with transcript: | -116bp_to_AF087969_5end |
EntrezGene: | CDK5RAP2 |
HGNC: | 18672 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 1.51e-18 | 9 |
annulus pulposus cell | 7.40e-15 | 2 |
trabecular meshwork cell | 4.04e-14 | 2 |
mesenchymal stem cell of the bone marrow | 1.43e-10 | 6 |
nucleus pulposus cell of intervertebral disc | 2.53e-10 | 3 |
skeletal muscle satellite cell | 1.07e-09 | 3 |
mucus secreting cell | 1.77e-08 | 1 |
multinucleate cell | 4.71e-08 | 1 |
myotube | 4.71e-08 | 1 |
skeletal muscle myoblast | 9.32e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 1.58e-22 | 5 |
symphysis | 1.58e-22 | 5 |
nonsynovial joint | 1.58e-22 | 5 |
fibrous joint | 1.58e-22 | 5 |
cartilaginous joint | 1.58e-22 | 5 |
developing mesenchymal condensation | 1.58e-22 | 5 |
pre-cartilage condensation | 1.58e-22 | 5 |
cartilaginous condensation | 1.58e-22 | 5 |
cartilage element | 1.58e-22 | 5 |
post-cranial axial skeletal system | 1.58e-22 | 5 |
vertebral column | 1.58e-22 | 5 |
intervertebral disk | 1.58e-22 | 5 |
intervertebral joint | 1.58e-22 | 5 |
annulus fibrosus | 7.40e-15 | 2 |
fibrocartilage | 7.40e-15 | 2 |
annulus fibrosus disci intervertebralis | 7.40e-15 | 2 |
articulation | 3.75e-14 | 8 |
skeletal joint | 3.75e-14 | 8 |
articular system | 3.75e-14 | 8 |
reticulum trabeculare | 4.04e-14 | 2 |
aqueous drainage system | 4.04e-14 | 2 |
nucleus pulposus | 2.53e-10 | 3 |
axial mesoderm | 2.53e-10 | 3 |
notochord | 2.53e-10 | 3 |
chordamesoderm | 2.53e-10 | 3 |
cartilage tissue | 3.33e-10 | 3 |
skeletal tissue | 3.33e-10 | 3 |
musculoskeletal system | 2.31e-09 | 167 |
skeletal element | 2.21e-08 | 90 |
stroma of bone marrow | 2.90e-08 | 1 |
skeletal system | 2.44e-07 | 100 |
subdivision of skeletal system | 3.99e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 1.77e-08 | 1 |