FFCP PHASE1:Hg19::chr7:116139821..116139832,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:116139821..116139832,+ to FFCP PHASE1:Hg19::chr7:116139821..116139832,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=858 | |EntrezGene=858 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1528 | |HGNC=1528 | ||
|TSSclassifier=strong | |||
|UniProt=E9PCT3 | |UniProt=E9PCT3 | ||
|association_with_transcript=-1bp_to_ENST00000393480_5end | |||
|cluster_id=chr7:116139821..116139832,+ | |||
|coexpression_cluster_id=C2874 | |||
|description=CAGE_peak_3_at_CAV2_5end | |||
|id=chr7:116139821..116139832,+ | |||
|ontology_enrichment_celltype=CL:0000076!2.65e-15!62;CL:0002139!3.51e-15!24;CL:0000222!1.53e-13!119;CL:0000220!1.70e-13!246;CL:0002321!7.26e-13!248;CL:0000213!1.12e-12!57;CL:0000215!1.12e-12!57;CL:0000066!7.71e-12!254;CL:0000115!2.75e-11!35;CL:0000071!3.16e-11!18;CL:0002546!3.16e-11!18;CL:0002078!1.26e-08!44;CL:0000057!2.20e-07!75;CL:0000136!7.25e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.70e-16;24!CL:0000071;3.77e-12;18!CL:0000115;1.15e-10;36!CL:0000076;1.50e-08;63!CL:0000213;6.41e-08;58!CL:0000215;6.41e-08;58!CL:0002620;6.38e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.81e-16,24;CL:0000076,5.20e-16,63;CL:0000213,8.32e-13,58;CL:0000215,8.32e-13,58;CL:0000115,2.11e-12,36;CL:0000071,3.85e-12,18;CL:0002546,3.85e-12,18;CL:0000222,5.43e-12,121;CL:0002321,2.29e-11,250;CL:0000066,1.03e-10,253;CL:0002078,8.81e-09,45;CL:0000057,4.04e-08,76;CL:0000136,2.27e-07,15;CL:0002620,3.61e-07,23 | |||
|ontology_enrichment_development_v019=CL:0002546;3.77e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.44e-14!79;UBERON:0007798!1.44e-14!79;UBERON:0000055!1.74e-14!69;UBERON:0000468!3.01e-14!659;UBERON:0004872!4.30e-14!84;UBERON:0000467!1.68e-13!625;UBERON:0000480!2.16e-13!626;UBERON:0001981!1.17e-11!60;UBERON:0007500!1.17e-11!60;UBERON:0004537!1.17e-11!60;UBERON:0006965!1.17e-11!60;UBERON:0000487!1.39e-11!22;UBERON:0000477!1.61e-11!286;UBERON:0001986!3.16e-11!18;UBERON:0004638!3.16e-11!18;UBERON:0004852!3.16e-11!18;UBERON:0000490!3.53e-11!138;UBERON:0001009!4.32e-11!113;UBERON:0000483!6.56e-11!309;UBERON:0000119!7.31e-11!312;UBERON:0003914!8.80e-11!118;UBERON:0004535!3.97e-10!110;UBERON:0004923!4.03e-10!57;UBERON:0003102!4.09e-10!95;UBERON:0004111!6.73e-10!241;UBERON:0000475!7.99e-10!365;UBERON:0006914!8.38e-10!25;UBERON:0002100!2.29e-09!216;UBERON:0004119!9.36e-09!169;UBERON:0000925!9.36e-09!169;UBERON:0006595!9.36e-09!169;UBERON:0003104!4.66e-08!238;UBERON:0009142!4.66e-08!238;UBERON:0000481!1.57e-07!347;UBERON:0005631!1.57e-07!14;UBERON:0000158!1.57e-07!14;UBERON:0002199!2.08e-07!45;UBERON:0002416!2.08e-07!45;UBERON:0005256!3.11e-07!143;UBERON:0000486!3.12e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.77e-12;18!UBERON:0001986;3.77e-12;18!UBERON:0004852;3.77e-12;18!UBERON:0000487;7.86e-12;22!UBERON:0006914;1.02e-09;25!UBERON:0000490;1.11e-08;33!UBERON:0000055;4.74e-08;65!UBERON:0005631;1.60e-07;10!UBERON:0000158;1.60e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,1.28e-14,68;UBERON:0002049,3.01e-14,78;UBERON:0007798,3.01e-14,78;UBERON:0004872,3.50e-14,83;UBERON:0004638,3.85e-12,18;UBERON:0001986,3.85e-12,18;UBERON:0004852,3.85e-12,18;UBERON:0000487,5.52e-12,22;UBERON:0004923,6.70e-12,66;UBERON:0000490,6.77e-12,148;UBERON:0007500,1.01e-11,59;UBERON:0001981,1.01e-11,59;UBERON:0004537,1.01e-11,59;UBERON:0006965,1.01e-11,59;UBERON:0003102,6.35e-11,99;UBERON:0003914,1.67e-10,117;UBERON:0001009,3.16e-10,112;UBERON:0006914,6.42e-10,25;UBERON:0004535,3.03e-09,109;UBERON:0004119,2.92e-08,160;UBERON:0000925,2.92e-08,160;UBERON:0006595,2.92e-08,160;UBERON:0005631,4.27e-08,14;UBERON:0000158,4.27e-08,14;UBERON:0002199,7.50e-08,46;UBERON:0002416,7.50e-08,46;UBERON:0002100,3.59e-07,199;UBERON:0002097,5.56e-07,41 | |||
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| ||
|short_description=p3@CAV2 | |||
}} | }} |
Latest revision as of 07:20, 25 September 2015
Short description: | p3@CAV2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CAV2_5end |
Coexpression cluster: | C2874_mature_neuroblastoma_oral_pharyngeal_normal_neuroectodermal_mesothelioma |
Association with transcript: | -1bp_to_ENST00000393480_5end |
EntrezGene: | CAV2 |
HGNC: | 1528 |
UniProt: | E9PCT3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.81e-16 | 24 |
squamous epithelial cell | 5.20e-16 | 63 |
lining cell | 8.32e-13 | 58 |
barrier cell | 8.32e-13 | 58 |
endothelial cell | 2.11e-12 | 36 |
blood vessel endothelial cell | 3.85e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.85e-12 | 18 |
mesodermal cell | 5.43e-12 | 121 |
embryonic cell | 2.29e-11 | 250 |
epithelial cell | 1.03e-10 | 253 |
meso-epithelial cell | 8.81e-09 | 45 |
fibroblast | 4.04e-08 | 76 |
fat cell | 2.27e-07 | 15 |
skin fibroblast | 3.61e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
vessel | 1.28e-14 | 68 |
vasculature | 3.01e-14 | 78 |
vascular system | 3.01e-14 | 78 |
splanchnic layer of lateral plate mesoderm | 3.50e-14 | 83 |
blood vessel endothelium | 3.85e-12 | 18 |
endothelium | 3.85e-12 | 18 |
cardiovascular system endothelium | 3.85e-12 | 18 |
simple squamous epithelium | 5.52e-12 | 22 |
organ component layer | 6.70e-12 | 66 |
unilaminar epithelium | 6.77e-12 | 148 |
epithelial tube open at both ends | 1.01e-11 | 59 |
blood vessel | 1.01e-11 | 59 |
blood vasculature | 1.01e-11 | 59 |
vascular cord | 1.01e-11 | 59 |
surface structure | 6.35e-11 | 99 |
epithelial tube | 1.67e-10 | 117 |
circulatory system | 3.16e-10 | 112 |
squamous epithelium | 6.42e-10 | 25 |
cardiovascular system | 3.03e-09 | 109 |
endoderm-derived structure | 2.92e-08 | 160 |
endoderm | 2.92e-08 | 160 |
presumptive endoderm | 2.92e-08 | 160 |
extraembryonic membrane | 4.27e-08 | 14 |
membranous layer | 4.27e-08 | 14 |
integument | 7.50e-08 | 46 |
integumental system | 7.50e-08 | 46 |
trunk | 3.59e-07 | 199 |
skin of body | 5.56e-07 | 41 |