FFCP PHASE1:Hg19::chr6:41604747..41604796,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:41604747..41604796,+ to FFCP PHASE1:Hg19::chr6:41604747..41604796,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4188 | |EntrezGene=4188 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6967 | |HGNC=6967 | ||
|TSSclassifier=strong | |||
|UniProt=B1AKB7 | |UniProt=B1AKB7 | ||
|association_with_transcript=0bp_to_ENST00000419164_5end | |||
|cluster_id=chr6:41604747..41604796,+ | |||
|coexpression_cluster_id=C511 | |||
|description=CAGE_peak_1_at_MDFI_5end | |||
|id=chr6:41604747..41604796,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.08e-35!254;CL:0000076!3.34e-13!62;CL:0002076!4.47e-12!43;CL:0002321!1.16e-11!248;CL:0000220!1.61e-11!246;CL:0000115!8.84e-09!35;CL:0002078!9.26e-09!44;CL:0002368!1.06e-08!13;CL:0002139!4.26e-08!24;CL:0000223!1.22e-07!59;CL:1000449!2.24e-07!16;CL:0000071!3.81e-07!18;CL:0002546!3.81e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.45e-11;42!CL:0002368;8.73e-11;13!CL:1000449;5.37e-10;15!CL:0002681;2.56e-08;12!CL:0002584;2.56e-08;12!CL:1000497;3.15e-08;17!CL:0002518;3.15e-08;17!CL:0002251;8.66e-08;20!CL:0000071;1.08e-07;18!CL:1000507;1.28e-07;10!CL:1000494;1.28e-07;10!CL:0002202;2.11e-07;9!CL:0002632;2.11e-07;9!CL:0000076;3.25e-07;63!CL:0000115;3.73e-07;36!CL:0002139;3.80e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.77e-37,253;CL:0002076,4.08e-15,42;CL:0000076,8.83e-15,63;CL:0002321,1.19e-11,250;CL:0002368,8.50e-11,13;CL:1000449,4.92e-10,15;CL:0000223,8.12e-10,58;CL:0000115,1.64e-08,36;CL:0002681,2.31e-08,12;CL:0002584,2.31e-08,12;CL:0002078,2.62e-08,45;CL:1000497,2.92e-08,17;CL:0002518,2.92e-08,17;CL:0002251,8.76e-08,20;CL:0000071,8.95e-08,18;CL:0002546,8.95e-08,18;CL:1000507,1.36e-07,10;CL:1000494,1.36e-07,10;CL:0002202,2.03e-07,9;CL:0002632,2.03e-07,9;CL:0002139,3.13e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002546;1.08e-07;18 | |||
|ontology_enrichment_disease=DOID:1749!1.37e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.04e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.09e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.94e-13!169;UBERON:0000925!7.94e-13!169;UBERON:0006595!7.94e-13!169;UBERON:0000464!2.94e-12!104;UBERON:0000466!1.82e-11!126;UBERON:0000119!7.94e-11!312;UBERON:0000483!2.09e-10!309;UBERON:0001048!2.75e-10!168;UBERON:0000922!5.42e-10!612;UBERON:0000468!1.67e-09!659;UBERON:0001004!4.60e-09!72;UBERON:0000481!6.28e-09!347;UBERON:0000477!6.40e-09!286;UBERON:0002050!6.44e-09!605;UBERON:0005423!6.44e-09!605;UBERON:0004111!9.10e-09!241;UBERON:0000923!1.04e-08!604;UBERON:0005291!1.04e-08!604;UBERON:0006598!1.04e-08!604;UBERON:0002532!1.04e-08!604;UBERON:0000077!1.45e-08!130;UBERON:0000064!1.91e-08!219;UBERON:0001007!3.76e-08!155;UBERON:0001555!3.76e-08!155;UBERON:0007026!3.76e-08!155;UBERON:0000467!1.02e-07!625;UBERON:0002553!1.24e-07!70;UBERON:0003104!1.26e-07!238;UBERON:0009142!1.26e-07!238;UBERON:0000480!1.40e-07!626;UBERON:0005631!1.82e-07!14;UBERON:0000158!1.82e-07!14;UBERON:0004211!2.24e-07!16;UBERON:0001285!2.24e-07!16;UBERON:0007684!2.24e-07!16;UBERON:0003220!2.24e-07!16;UBERON:0004208!2.24e-07!16;UBERON:0000065!3.25e-07!53;UBERON:0000080!3.46e-07!18;UBERON:0002120!3.46e-07!18;UBERON:0004875!3.46e-07!18;UBERON:0005721!3.46e-07!18;UBERON:0005754!3.46e-07!18;UBERON:0007297!3.46e-07!18;UBERON:0006555!3.71e-07!17;UBERON:0005103!3.71e-07!17;UBERON:0000083!3.71e-07!17;UBERON:0009201!3.71e-07!17;UBERON:0004819!3.71e-07!17;UBERON:0006553!3.71e-07!17;UBERON:0003074!3.71e-07!17;UBERON:0003060!3.71e-07!17;UBERON:0001986!3.81e-07!18;UBERON:0004638!3.81e-07!18;UBERON:0004852!3.81e-07!18;UBERON:0004921!4.10e-07!129;UBERON:0004185!4.10e-07!129;UBERON:0000058!4.45e-07!26;UBERON:0004876!8.07e-07!20;UBERON:0001041!8.34e-07!98;UBERON:0003064!9.13e-07!37;UBERON:0000487!9.48e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;5.37e-10;15!UBERON:0004819;5.37e-10;15!UBERON:0001285;5.37e-10;15!UBERON:0007684;5.37e-10;15!UBERON:0001225;2.56e-08;12!UBERON:0008987;2.56e-08;12!UBERON:0006554;5.69e-08;30!UBERON:0001008;5.69e-08;30!UBERON:0004638;1.08e-07;18!UBERON:0001986;1.08e-07;18!UBERON:0004852;1.08e-07;18!UBERON:0000487;1.26e-07;22!UBERON:0004211;1.28e-07;10!UBERON:0009773;1.28e-07;10!UBERON:0001231;1.28e-07;10!UBERON:0004810;1.28e-07;10!UBERON:0001851;5.09e-07;15!UBERON:0000490;6.08e-07;33!UBERON:0000353;9.28e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,4.92e-10,15;UBERON:0009773,4.92e-10,15;UBERON:0001231,4.92e-10,15;UBERON:0001285,4.92e-10,15;UBERON:0007684,4.92e-10,15;UBERON:0004208,4.92e-10,15;UBERON:0006554,1.76e-09,47;UBERON:0005631,1.87e-09,14;UBERON:0000158,1.87e-09,14;UBERON:0006555,4.35e-09,16;UBERON:0004819,4.35e-09,16;UBERON:0001008,4.50e-09,48;UBERON:0001225,2.31e-08,12;UBERON:0008987,2.31e-08,12;UBERON:0004119,2.48e-08,160;UBERON:0000925,2.48e-08,160;UBERON:0006595,2.48e-08,160;UBERON:0004638,8.95e-08,18;UBERON:0001986,8.95e-08,18;UBERON:0004852,8.95e-08,18;UBERON:0000487,1.03e-07,22;UBERON:0004810,1.36e-07,10;UBERON:0000033,1.64e-07,56;UBERON:0003124,2.20e-07,7;UBERON:0001004,4.86e-07,74;UBERON:0001851,4.87e-07,15;UBERON:0000153,6.43e-07,62;UBERON:0007811,6.43e-07,62;UBERON:0000353,8.61e-07,15;UBERON:0005177,8.67e-07,101 | |||
|phase1_expression=0,0,0,0,0,0,2.53299878168311,0,0,37.5972922847309,173.752490825134,72.304094175087,77.5474915991654,0.495065411840187,0,0.672325146451775,0.602694528023977,0,0.487932798790507,6.40229501999297,7.34402488479311,9.40364164434263,0,1.50561867580173,1.63205431473244,0,0,0,0,0,1.39334510984468,172.851190202038,177.109080241611,120.539807314373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.01210257911091,2.30152611318355,0,0,0.579386075843295,4.7717156823066,44.7704080678425,1.03988298880475,1.77383517970051,2.89854792787316,0.589405839739707,164.661470308229,94.5500329100295,0,0,0,0,0,0,2.98143611050058,2.58070378531837,5.9013885273291,3.95715559346807,2.51699661725944,11.5549577614828,6.68783892917794,0.516833518338658,0.35576626268671,0.66944122552934,4.83395180530976,6.0821768457481,2.4406205754817,4.04429388380456,15.3926970097534,3.48268940307911,2.02076435363553,0.900891843866578,4.5994991239765,6.6448596169769,8.24407847686833,0,0,100.737726044925,0,0,0,0,0.354668382198357,3.36406560085384,13.8773694448616,4.19334832309172,0.311211035399766,2.02066008104532,3.10577615915572,2.11900398702904,0.576175924479999,0.70296429550139,0,2.2818872861778,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0.250237039743928,0,0,0,0,3.97012641060074,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,75.7582544400124,67.641037906527,57.9345282685788,0.609868530647977,0.265059536642971,0.929551542956147,3.83545903556871,1.26160425437814,1.45990943630332,1.56449532329816,0,0,0,0,0.473227200159376,0,0.723033089650446,0.441175890929576,0.435758888184812,0.237270619111097,0.269662616320329,0.784885860501384,0,0.738155454624648,1.40241773803446,3.7041661019826,4.41026134156626,0,0,0,0,0.368965315629341,0.857839051492628,90.5439854621161,132.634068843991,113.899325742378,70.1820414301654,1.3032332212413,0,1.44331342025273,0.579652024875384,1.87853910777315,5.91902435820403,4.62985512576611,4.56609965363036,0,0,0,0,0,43.1175636339174,65.6810121257541,70.1786731349813,88.3942619077113,108.697093004222,109.64744624125,0,0,0.207328115540772,0,0.12624243342638,0.126995788584338,0,0,3.4214489204541,0,0,0,2.35475277125258,0.43596006883328,2.2001485746285,0.775630294546667,0,0,0,0,4.62973273671856,2.83698264046557,1.5985330740966,1.42977993658148,0.542621605391443,3.29296134712308,0.65147236858747,0.710783897485092,2.37585561880029,0.904318131178758,2.61460037580088,4.09889263846434,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0,1.00509759200609,0,0,0,0,0.24538298343828,3.00102312635806,3.7977103317963,0.207970861530807,0.178428988797162,0,0,0.300946099727719,11.3703752027992,3.10419213877515,3.98535359121262,3.13427586520895,0,2.15381273209015,2.05886054286514,0,0,0,173.692098438707,184.743337856652,142.728218451609,0.248107807818777,0.61384789315225,0.561320188866147,0,0,0,1.48418066444991,0,0,0,0,0,0,67.3701740219037,68.0478508236274,0,0,0.655622074797121,21.6575814195558,13.0155919706461,19.6087442294214,8.76835347919564,7.17751076471555,7.96133688496276,2.55140557914773,1.51141141271498,16.9649977959318,8.12839312631558,10.0337954770971,21.4096069357832,37.3984204017926,8.73111543416495,0,0,5.38545262744417,12.1365418908891,12.6897573919078,3.40035338437484,23.3502135286776,26.4030399745882,73.5059888635101,64.3559643576156,0,6.47693812557217,0.462145851343933,1.22802939780904,0.689182862422653,0.537101224341368,1.0151168573996,0.426133137080504,1.4245125703478,77.0227705582158,72.0712752619148,72.2287952719346,47.5441570021085,0,0,0,1.54016790088044,0,0,0,0,1.48863347743867,1.58189712359363,3.43134349062885,1.02359116524534,0,0,0,0.179872457583315,3.0199073270966,0.942499218765491,0.202182481573316,0,1.26377536871694,0.975267478179181,0,1.05650146756755,0.136499911407986,0,0,0,0,0,0,0,0.202910376962704,2.78841148289775,0.281695602532241,1.57752487424457,3.04572027140676,0,0,0.211107635297664,0,3.79473173765715,11.1979110478395,112.579871888849,140.09317558698,135.02482122804,2.44773882019626,142.497278354177,117.930032967338,172.494329725767,101.537742891476,0,0,0,0,0,0,0,0,0,0,38.471313909022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2284324244932,0.293016358543788,0,0,0,122.237176185697,44.2477374440632,153.273190347517,0,0,0.222617410045812,0,0.211125408127993,0.996239941255349,0.552567831062295,0,19.2265123104051,0,0,18.7824853897913,32.5818537909609,0,3.64980600856654,0,0,0,0.278304294485554,0,0,0.0874599999961957,0.724999575434793,29.0173293128024,11.6956679134672,24.3479312220974,0,0,0,0,0.241192877250816,0,0,0.295547618953547,0,0,30.9520712298499,4.38616473471643,0,0,12.9251007950072,0,73.0512655786096,23.8153742844842,45.8409907376026,0,0,0,0,0,0,0,0,3.79796516150449,2.77495773870551,0,0,0,0.265372693510018,0,0,0,0,0.134802265961354,0,0.234264445725339,0,12.9138648495179,0,0.394584402849391,1.20990716048664,0.3060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| ||
|short_description=p1@MDFI | |||
}} | }} |
Latest revision as of 18:45, 18 September 2015
Short description: | p1@MDFI |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MDFI_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | 0bp_to_ENST00000419164_5end |
EntrezGene: | MDFI |
HGNC: | 6967 |
UniProt: | B1AKB7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.77e-37 | 253 |
endo-epithelial cell | 4.08e-15 | 42 |
squamous epithelial cell | 8.83e-15 | 63 |
embryonic cell | 1.19e-11 | 250 |
respiratory epithelial cell | 8.50e-11 | 13 |
epithelial cell of nephron | 4.92e-10 | 15 |
endodermal cell | 8.12e-10 | 58 |
endothelial cell | 1.64e-08 | 36 |
kidney cortical cell | 2.31e-08 | 12 |
renal cortical epithelial cell | 2.31e-08 | 12 |
meso-epithelial cell | 2.62e-08 | 45 |
kidney cell | 2.92e-08 | 17 |
kidney epithelial cell | 2.92e-08 | 17 |
epithelial cell of alimentary canal | 8.76e-08 | 20 |
blood vessel endothelial cell | 8.95e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.95e-08 | 18 |
kidney tubule cell | 1.36e-07 | 10 |
nephron tubule epithelial cell | 1.36e-07 | 10 |
epithelial cell of tracheobronchial tree | 2.03e-07 | 9 |
epithelial cell of lower respiratory tract | 2.03e-07 | 9 |
endothelial cell of vascular tree | 3.13e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 4.92e-10 | 15 |
renal tubule | 4.92e-10 | 15 |
nephron tubule | 4.92e-10 | 15 |
nephron | 4.92e-10 | 15 |
uriniferous tubule | 4.92e-10 | 15 |
nephrogenic mesenchyme | 4.92e-10 | 15 |
urinary system structure | 1.76e-09 | 47 |
extraembryonic membrane | 1.87e-09 | 14 |
membranous layer | 1.87e-09 | 14 |
excretory tube | 4.35e-09 | 16 |
kidney epithelium | 4.35e-09 | 16 |
renal system | 4.50e-09 | 48 |
cortex of kidney | 2.31e-08 | 12 |
renal parenchyma | 2.31e-08 | 12 |
endoderm-derived structure | 2.48e-08 | 160 |
endoderm | 2.48e-08 | 160 |
presumptive endoderm | 2.48e-08 | 160 |
blood vessel endothelium | 8.95e-08 | 18 |
endothelium | 8.95e-08 | 18 |
cardiovascular system endothelium | 8.95e-08 | 18 |
simple squamous epithelium | 1.03e-07 | 22 |
nephron tubule epithelium | 1.36e-07 | 10 |
head | 1.64e-07 | 56 |
chorion | 2.20e-07 | 7 |
respiratory system | 4.86e-07 | 74 |
cortex | 4.87e-07 | 15 |
anterior region of body | 6.43e-07 | 62 |
craniocervical region | 6.43e-07 | 62 |
parenchyma | 8.61e-07 | 15 |
trunk region element | 8.67e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.09e-09 | 14 |