FFCP PHASE1:Hg19::chr3:87040431..87040441,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:87040431..87040441,- to FFCP PHASE1:Hg19::chr3:87040431..87040441,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=389136 | |EntrezGene=389136 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24327 | |HGNC=24327 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-162bp_to_ENST00000383698_5end | |||
|cluster_id=chr3:87040431..87040441,- | |||
|coexpression_cluster_id=C1930 | |||
|description=CAGE_peak_7_at_VGLL3_5end | |||
|id=chr3:87040431..87040441,- | |||
|ontology_enrichment_celltype=CL:0000055!6.77e-22!180;CL:0000057!1.50e-21!75;CL:0002620!2.51e-11!23;CL:0000680!6.19e-07!57;CL:0000056!6.19e-07!57;CL:0000355!6.19e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.95e-13;23!CL:0000057;5.84e-11;73!CL:0000349;4.96e-10;19!CL:0000188;6.09e-08;9!CL:0000680;9.54e-08;7!CL:0002320;1.68e-07;188!CL:0002537;2.54e-07;5!CL:0000723;8.65e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.97e-25,76;CL:0002620,1.92e-13,23;CL:0000349,7.31e-10,19;CL:0000048,1.15e-09,427;CL:0000723,4.23e-09,433;CL:0000034,2.21e-08,441;CL:0000188,4.47e-08,9;CL:0000680,2.45e-07,58;CL:0000056,2.45e-07,58;CL:0000355,2.45e-07,58;CL:0002537,3.92e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004923!1.39e-11!57;UBERON:0000914!3.78e-11!83;UBERON:0002329!3.78e-11!83;UBERON:0003077!3.78e-11!83;UBERON:0003059!3.78e-11!83;UBERON:0007282!3.78e-11!83;UBERON:0009618!3.78e-11!83;UBERON:0007285!3.78e-11!83;UBERON:0005631!2.26e-10!14;UBERON:0000158!2.26e-10!14;UBERON:0005256!1.78e-09!143;UBERON:0000478!3.37e-09!24;UBERON:0004290!1.18e-08!70;UBERON:0003102!1.25e-08!95;UBERON:0002100!1.56e-08!216;UBERON:0000486!3.42e-08!82;UBERON:0002199!5.61e-08!45;UBERON:0002416!5.61e-08!45;UBERON:0000475!1.31e-07!365;UBERON:0003104!2.18e-07!238;UBERON:0009142!2.18e-07!238;UBERON:0002097!2.85e-07!40;UBERON:0004871!7.05e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.75e-12;10!UBERON:0000158;2.75e-12;10!UBERON:0000305;1.08e-08;7!UBERON:0000478;1.84e-08;24!UBERON:0001134;2.79e-08;16!UBERON:0002036;2.79e-08;16!UBERON:0002384;7.06e-08;198!UBERON:0002097;1.32e-07;41!UBERON:0002385;3.44e-07;31!UBERON:0001015;3.44e-07;31!UBERON:0000383;3.44e-07;31!UBERON:0002199;3.71e-07;46!UBERON:0002416;3.71e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.33e-14,14;UBERON:0000158,5.33e-14,14;UBERON:0004923,5.37e-11,66;UBERON:0002199,1.45e-10,46;UBERON:0002416,1.45e-10,46;UBERON:0002097,6.24e-10,41;UBERON:0004871,6.45e-10,8;UBERON:0007524,2.79e-09,73;UBERON:0002329,5.90e-09,71;UBERON:0003059,5.90e-09,71;UBERON:0007282,5.90e-09,71;UBERON:0004290,5.90e-09,71;UBERON:0009618,5.90e-09,71;UBERON:0000305,1.06e-08,7;UBERON:0003077,1.06e-08,72;UBERON:0007285,1.06e-08,72;UBERON:0000478,2.51e-08,24;UBERON:0000486,3.86e-08,83;UBERON:0003102,8.66e-08,99;UBERON:0007503,2.52e-07,78;UBERON:0001134,4.11e-07,62;UBERON:0002036,4.11e-07,62;UBERON:0003082,4.11e-07,62;UBERON:0002384,4.25e-07,371;UBERON:0003124,5.67e-07,7 | |||
|phase1_expression=2.72517568905835,2.99740733447376,2.81908808191942,1.0007329835313,0.893922188854576,0.872338524100369,0,1.89515962028049,1.04474251279935,0,0,2.83973783769224,1.58260186937072,1.36142988256051,2.31978163009541,0,0.602694528023977,0,1.46379839637152,0.492484232307152,0.204000691244253,0.940364164434263,0.286235987131057,0.136874425072884,1.00434111675842,0,0,0,0,0,0.309632246632152,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35350429851818,1.91793842765295,0,1.00267582127178,0.434539556882471,0,0,0.283604451492204,3.1042115644759,2.45937399940753,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.17859945656816,0,0.112611480483322,0,0,0.366403487860815,0,0,0,3.47880366186723,1.64619665163954,1.19168262731897,1.43418310374407,1.06400514659507,2.24271040056923,1.06748995729705,0.24666754841716,4.35695449559673,0.942974704487816,0.326923806226917,1.21085942115945,2.88087962239999,2.57753575017176,0.624320153660641,1.71141546463335,1.04614076386261,1.52664848236894,1.45685649931318,0.842704840213491,1.83738754129404,0.61417158655884,2.06651562351531,2.37600571456411,1.7308685049499,1.82032272387605,0,0.673344455816265,1.7516592782075,4.15596173226274,0.877955241761676,2.14541457059314,2.10333282469236,1.02088964844019,1.4351170855109,2.56268866582281,5.72216133130817,1.80054657650641,2.57631323096097,1.54584324027377,2.23340227597908,1.85653965465393,2.33848812386877,2.01947019395292,3.49789614840738,1.45481451136931,1.42003837006646,1.0075209822764,2.20428770003634,0,0,0,0,0.265059536642971,0.116193942869518,0.207322110030741,0.252320850875628,0,1.56449532329816,4.5026865673502,0,4.64367928031979,5.0531563716871,0.828147600278907,0.674338760312407,1.20505514941741,0.772057809126758,0.653638332277218,0.71181185733329,0.674156540800822,0.98110732562673,0.769494313892781,0,2.80483547606892,1.2347220339942,0,0,0,0,0,0.368965315629341,0.857839051492628,0,0,0,0.185176890317059,0,0,2.88662684050547,0.231860809950154,2.7003999674239,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0.358234090811393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.897048674762886,2.1798003441664,1.3200891447771,1.42198887333556,0,1.690605505112,3.19125739901845,2.08014873822732,1.02882949704857,0,2.1313774321288,1.42977993658148,0,0.823240336780769,1.62868092146868,2.13235169245527,0.791951872933429,0.301439377059586,0,1.09970290300263,0,0,0,0.958499421966331,1.14861935834114,1.42636905040718,1.59259437334337,3.28762116080613,1.25342674267927,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,2.4538298343828,1.50051156317903,1.08506009479894,1.66376689224646,1.60586089917446,2.52323864054295,1.7571212248907,3.61135319673263,4.5481500811197,2.0694614258501,3.98535359121262,1.47495334833363,3.64911180765948,0.391602314925481,0.686286847621712,0,0,0,0.606255142892519,3.32870879020994,2.11673205330776,1.48864684691266,1.99500565274481,3.36792113319688,3.71603532841533,1.53512174720011,2.73451665944133,1.48418066444991,1.3878872442239,0.710246901252508,0.657017248110473,0,0.581051892299796,0.483437798366489,0.601519410909855,0.184161977871793,0.229628896329213,0.546273504020151,0.917870904715969,0.451199612907412,0.385076685522074,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0,0,0.328014645699706,0.976135183992909,2.47298427954533,0,0,0.574265537996172,0.650060246036521,4.82051789532479,0.96670718292122,3.38906957652218,1.99554777143968,3.03240459465967,4.61907052933577,4.78555089916954,3.32383846922794,2.40386496246191,0,0.384380134730212,0.127612712494584,0.30347334256665,1.85938219718914,1.88887408098384,0,0,0,0,0.37064843820784,0.286249773483982,2.232950216158,0.949138274156178,2.66882271493355,1.02359116524534,2.56763392820352,0.636406495851874,0,3.05783177891635,2.19629623788844,2.35624804691373,0.404364963146632,0,0,0.975267478179181,0.243713489631284,0,0.409499734223957,0.848432591722276,0,1.65409603063837,0,1.75380354101505,0,1.31178950409327,0.202910376962704,0.6196469961995,0,1.72093622644862,2.25972794330179,0,0,2.53329162357197,0.987884678879706,0.379473173765715,0.699869440489966,0,0.670302275535787,0,3.95403963262472,0.86101074534246,0,0,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,1.31857361344705,0,1.33732061132974,0,11.4597352674091,4.15750553165694,6.14321404198464,0,0.281338832821026,1.66963057534359,0.16480387422676,0,1.9924798825107,0.552567831062295,0,0,0,2.17727711363265,0.269605053441981,0.358042349351218,0,0.986434056369336,0,3.33410970433911,0,0,0,0,0,0,0,0,2.83665218121524,0,0.291604613383254,0,0,0,0,0,0,0,0,0.139423744278603,0.846452843541768,1.02547850262301,4.15015027898508,0.179515288819544,0.977826347298073,9.25103363222567,3.57230614267263,6.92945208824225,0,0.31396051279005,0,0,0,0,0,0,0,0.163232808159148,0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| 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| ||
|short_description=p7@VGLL3 | |||
}} | }} |
Latest revision as of 18:31, 19 September 2015
Short description: | p7@VGLL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_VGLL3_5end |
Coexpression cluster: | C1930_placenta_Fibroblast_amniotic_chorionic_bronchogenic_Hair_bone |
Association with transcript: | -162bp_to_ENST00000383698_5end |
EntrezGene: | VGLL3 |
HGNC: | 24327 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.97e-25 | 76 |
skin fibroblast | 1.92e-13 | 23 |
extraembryonic cell | 7.31e-10 | 19 |
multi fate stem cell | 1.15e-09 | 427 |
somatic stem cell | 4.23e-09 | 433 |
stem cell | 2.21e-08 | 441 |
cell of skeletal muscle | 4.47e-08 | 9 |
muscle precursor cell | 2.45e-07 | 58 |
myoblast | 2.45e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.45e-07 | 58 |
amnion mesenchymal stem cell | 3.92e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.33e-14 | 14 |
membranous layer | 5.33e-14 | 14 |
organ component layer | 5.37e-11 | 66 |
integument | 1.45e-10 | 46 |
integumental system | 1.45e-10 | 46 |
skin of body | 6.24e-10 | 41 |
somatic layer of lateral plate mesoderm | 6.45e-10 | 8 |
dense mesenchyme tissue | 2.79e-09 | 73 |
somite | 5.90e-09 | 71 |
presomitic mesoderm | 5.90e-09 | 71 |
presumptive segmental plate | 5.90e-09 | 71 |
dermomyotome | 5.90e-09 | 71 |
trunk paraxial mesoderm | 5.90e-09 | 71 |
amnion | 1.06e-08 | 7 |
paraxial mesoderm | 1.06e-08 | 72 |
presumptive paraxial mesoderm | 1.06e-08 | 72 |
extraembryonic structure | 2.51e-08 | 24 |
multilaminar epithelium | 3.86e-08 | 83 |
surface structure | 8.66e-08 | 99 |
epithelial vesicle | 2.52e-07 | 78 |
skeletal muscle tissue | 4.11e-07 | 62 |
striated muscle tissue | 4.11e-07 | 62 |
myotome | 4.11e-07 | 62 |
connective tissue | 4.25e-07 | 371 |
chorion | 5.67e-07 | 7 |