FFCP PHASE1:Hg19::chr2:216257678..216257748,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:216257678..216257748,- to FFCP PHASE1:Hg19::chr2:216257678..216257748,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2335 | |EntrezGene=2335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3778 | |HGNC=3778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=177bp_to_uc010zjp.1_5end | |||
|cluster_id=chr2:216257678..216257748,- | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_35_at_FN1_5end | |||
|id=chr2:216257678..216257748,- | |||
|ontology_enrichment_celltype=CL:0000055!4.64e-38!180;CL:0000057!2.23e-23!75;CL:0000183!6.47e-18!59;CL:0000680!3.01e-17!57;CL:0000056!3.01e-17!57;CL:0000355!3.01e-17!57;CL:0000187!1.13e-16!54;CL:0000393!3.54e-14!60;CL:0000211!3.54e-14!60;CL:0002371!5.09e-14!591;CL:0000144!1.63e-12!625;CL:0002620!1.16e-10!23;CL:0000192!1.67e-10!42;CL:0000514!1.67e-10!42;CL:0000220!1.41e-08!246;CL:0002321!1.51e-08!248;CL:0000548!4.02e-08!679;CL:0000004!4.02e-08!679;CL:0000255!4.02e-08!679;CL:0000222!6.63e-08!119;CL:0000359!8.37e-08!32;CL:0000012!1.20e-07!682;CL:0000048!1.29e-07!430;CL:0000723!3.74e-07!436;CL:0000034!4.09e-07!444;CL:0002494!4.69e-07!16;CL:0000499!5.64e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000134;6.99e-13;55!CL:0002620;8.23e-13;23!CL:0000723;1.74e-12;61!CL:0000187;1.45e-11;55!CL:0000057;2.28e-11;73!CL:0000048;7.03e-11;58!CL:0000349;2.88e-10;19!CL:0000034;4.20e-10;69!CL:0002320;1.39e-09;188!CL:0000499;7.80e-09;28!CL:0000393;9.65e-09;61!CL:0000211;9.65e-09;61!CL:0000192;1.13e-08;43!CL:0002494;1.62e-08;16!CL:0000359;5.06e-08;32!CL:0000188;1.55e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.45e-28,76;CL:0000680,2.71e-20,58;CL:0000056,2.71e-20,58;CL:0000355,2.71e-20,58;CL:0000187,1.38e-19,55;CL:0000048,5.10e-18,427;CL:0000723,2.75e-17,433;CL:0000034,4.22e-17,441;CL:0000393,6.98e-16,61;CL:0000211,6.98e-16,61;CL:0002620,7.56e-13,23;CL:0000192,3.67e-12,43;CL:0000514,3.67e-12,43;CL:0000349,3.31e-10,19;CL:0000499,7.43e-09,28;CL:0002320,1.69e-08,361;CL:0002494,1.87e-08,16;CL:0000359,2.23e-08,32;CL:0000188,1.59e-07,9;CL:0000222,8.96e-07,121;CL:0000134,9.31e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000355;2.74e-11;58!CL:0000514;1.13e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.73e-20!143;UBERON:0000914!6.05e-20!83;UBERON:0002329!6.05e-20!83;UBERON:0003077!6.05e-20!83;UBERON:0003059!6.05e-20!83;UBERON:0007282!6.05e-20!83;UBERON:0009618!6.05e-20!83;UBERON:0007285!6.05e-20!83;UBERON:0004290!5.70e-18!70;UBERON:0000486!1.26e-15!82;UBERON:0002385!1.26e-14!63;UBERON:0001015!1.26e-14!63;UBERON:0000383!1.26e-14!63;UBERON:0001134!1.50e-14!61;UBERON:0002036!1.50e-14!61;UBERON:0003082!1.50e-14!61;UBERON:0002100!7.40e-11!216;UBERON:0003102!3.23e-10!95;UBERON:0004872!6.74e-10!84;UBERON:0002199!1.43e-09!45;UBERON:0002416!1.43e-09!45;UBERON:0003914!2.25e-09!118;UBERON:0000481!2.47e-09!347;UBERON:0000490!2.63e-09!138;UBERON:0000475!3.83e-09!365;UBERON:0000468!4.89e-09!659;UBERON:0003104!7.52e-09!238;UBERON:0009142!7.52e-09!238;UBERON:0002097!3.17e-08!40;UBERON:0000119!5.81e-08!312;UBERON:0005631!1.90e-07!14;UBERON:0000158!1.90e-07!14;UBERON:0000483!2.28e-07!309;UBERON:0004923!2.59e-07!57;UBERON:0002049!3.83e-07!79;UBERON:0007798!3.83e-07!79;UBERON:0001637!8.66e-07!42;UBERON:0003509!8.66e-07!42;UBERON:0004572!8.66e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;4.37e-09;198!UBERON:0000478;7.12e-08;24!UBERON:0002385;8.90e-08;31!UBERON:0001015;8.90e-08;31!UBERON:0000383;8.90e-08;31!UBERON:0002097;1.09e-07;41!UBERON:0002199;1.73e-07;46!UBERON:0002416;1.73e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.75e-22,78;UBERON:0002329,6.36e-22,71;UBERON:0003059,6.36e-22,71;UBERON:0007282,6.36e-22,71;UBERON:0004290,6.36e-22,71;UBERON:0009618,6.36e-22,71;UBERON:0007524,7.23e-22,73;UBERON:0003077,2.64e-21,72;UBERON:0007285,2.64e-21,72;UBERON:0000486,7.48e-18,83;UBERON:0001134,9.54e-18,62;UBERON:0002036,9.54e-18,62;UBERON:0003082,9.54e-18,62;UBERON:0002385,1.63e-17,64;UBERON:0001015,1.63e-17,64;UBERON:0000383,1.63e-17,64;UBERON:0005256,3.10e-17,122;UBERON:0003104,3.93e-17,160;UBERON:0009142,3.93e-17,160;UBERON:0002199,4.78e-11,46;UBERON:0002416,4.78e-11,46;UBERON:0000490,1.41e-10,148;UBERON:0002097,6.12e-10,41;UBERON:0003102,2.99e-09,99;UBERON:0002384,8.50e-09,371;UBERON:0000926,8.96e-09,315;UBERON:0004120,8.96e-09,315;UBERON:0006603,8.96e-09,315;UBERON:0005631,4.24e-08,14;UBERON:0000158,4.24e-08,14;UBERON:0004872,4.87e-08,83;UBERON:0000478,7.65e-08,24;UBERON:0004923,7.79e-07,66 | |||
|phase1_expression=0.908391896352783,2.78330681058278,1.12763523276777,1.0007329835313,0.893922188854576,4.36169262050184,2.53299878168311,2.52687949370732,0.783556884599516,0.491467873003018,2.09340350391728,22.0625785851474,26.3766978228454,4.70312141248177,9.27912652038164,10.0848771967766,9.04041792035965,7.30310090387373,3.41552959153355,2.70866327768933,4.89601658986207,3.76145665773705,0.85870796139317,0.547497700291537,3.01302335027527,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,53.6375105890716,16.7675214925909,6.77671577770711,3.61439152384566,2.00535164254356,3.18662341713812,31.0161519349929,71.5353259344875,1.51255707462509,6.20842312895179,5.88493064143945,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.838998872419812,0.825354125820202,0.417989933073621,0.258416759169329,0,0.33472061276467,0.402829317109147,0,0.24406205754817,0,1.62028389576352,0,0,0,0,0,0.732806975721629,0,0,0.436094052142534,12.9212707440783,9.62391888650806,12.3140538156293,44.4596762160661,9.22137793715728,3.36406560085384,22.417289103238,18.2533985828698,7.15785381419462,4.71487352243908,7.68270944633256,18.0115338897468,28.8087962239999,2.34321431833797,14.9836836878554,4.56377457235559,13.1514838885585,4.69737994575059,3.0755859429945,4.07307339436521,2.24569588380383,5.03620700978249,2.6864703105699,1.18800285728205,3.95627086845691,3.64064544775211,3.59309070908119,6.39677233025452,8.25782231154963,0.831192346452549,3.5118209670467,5.21029252858333,3.15499923703853,3.74326204428069,27.9847831674625,10.0371972744727,37.0880827029233,16.5050102846421,8.14114980983667,13.3973080823727,3.53622027030021,9.62025093775217,5.94365731483312,27.7677151668526,5.70709371582256,11.153577920498,23.0756235135799,4.83610071492673,3.39121184620975,0,0.272746120590835,0,0.121973706129595,0.132529768321485,3.71820617182459,1.45125477021519,2.52320850875628,0,3.12899064659632,20.5837100221723,2.76269842704961,6.03678306441573,0.721879481669586,0.118306800039844,0,0,0.110293972732394,0,0,0,0,0,0,5.60967095213783,11.1124983059478,14.7008711385542,0,3.9313088667105,0.590789906681404,0,1.72183813960359,2.74508496477641,1.42675371031213,0,0,0.277765335475589,1.95484983186195,6.23960871167747,1.44331342025273,0.231860809950154,12.0930955062896,0,0,0.380508304469197,0,0,0,0,0,0,2.68771405118175,0.283550194484773,6.08997954379368,3.77824120068151,6.13412286664338,0,0,0,0,0,0.190493682876507,0.381988425558278,0,1.71072446022705,0.411309970813294,0,0.285826432630578,2.69114602428866,12.6428419961651,5.64704800821315,1.68053230485111,39.3422090437071,5.917119267892,2.39344304926383,1.04007436911366,5.91576960802927,4.25547396069835,2.93064396917709,2.28764789853036,5.96883765930587,4.93944202068461,2.93162565864362,1.42156779497018,5.543663110534,2.71295439353627,1.74306691720059,0.99972991182057,0,0,0,9.58499421966331,9.18895486672911,4.27910715122155,2.60606352001643,4.10952645100767,1.43248770591916,0,0,0,0,0.254094624222463,1.30139853857622,0,0.502548796003046,0,0,0,0,6.99341502799097,14.5049451107306,8.95174578209127,13.3101351379717,31.2250730395033,8.35822799679854,3.98280810975225,1.80567659836631,0,3.10419213877515,14.6129631677796,7.37476674166813,5.90808578382963,6.06983588134496,11.6668764095691,0,0,0,2.42502057157008,11.6504807657348,18.1434175997808,2.23297027036899,2.76231551918512,6.17452207752762,0.512556597022804,3.58195074346692,4.98647155545183,0,12.7994045856204,12.9620059478583,4.43486642474569,7.78881643775432,6.74020195067764,3.38406458856542,19.2486211491153,0.0920809889358963,2.98517565227978,6.55528204824181,6.55622074797121,0.451199612907412,1.00119938235739,0.784349769176855,4.38417673959782,2.53323909342902,1.13733384070897,0.170093705276516,1.72732732881711,1.54227252690289,2.16757150035082,4.51520796469368,0,0,1.11937377361089,0,0,0,1.64007322849853,0.325378394664303,0.9273691048295,0.457847324091717,0.165018999841176,3.44559322797703,1.30012049207304,3.21367859688319,7.34697459020127,10.4753059637958,15.1968637978868,7.71884805913371,18.9059630968162,33.0638062124441,13.6362603865761,7.56772302997267,4.46269271474641,2.11409074101617,2.67986696238627,2.73126008309985,2.78907329578371,43.758916209459,2.7881490806424,0.616067160352178,2.66153015158511,0.869932992075073,2.22389062924704,1.28812398067792,2.232950216158,5.37845022021834,2.85945290885737,1.535386747868,8.55877976067841,1.90921948755562,4.70969184119538,4.13706652441624,3.84351841630477,2.47406044925942,2.22400729730648,0,2.52755073743389,1.46290121726877,2.43713489631284,0,4.23149725364756,6.36324443791707,5.65040583101214,1.10273068709225,7.29782872765342,2.63070531152258,5.78775534266688,15.7414740491192,5.0727594240676,4.02770547529675,4.50712964051586,3.01163839628508,4.51945588660357,6.06340787518125,2.12856638442359,1.68886108238131,9.22025700287725,1.1384195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| ||
|short_description=p35@FN1 | |||
}} | }} |
Latest revision as of 03:06, 20 September 2015
Short description: | p35@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_35_at_FN1_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 177bp_to_uc010zjp.1_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.45e-28 | 76 |
muscle precursor cell | 2.71e-20 | 58 |
myoblast | 2.71e-20 | 58 |
multi-potent skeletal muscle stem cell | 2.71e-20 | 58 |
muscle cell | 1.38e-19 | 55 |
multi fate stem cell | 5.10e-18 | 427 |
somatic stem cell | 2.75e-17 | 433 |
stem cell | 4.22e-17 | 441 |
electrically responsive cell | 6.98e-16 | 61 |
electrically active cell | 6.98e-16 | 61 |
skin fibroblast | 7.56e-13 | 23 |
smooth muscle cell | 3.67e-12 | 43 |
smooth muscle myoblast | 3.67e-12 | 43 |
extraembryonic cell | 3.31e-10 | 19 |
stromal cell | 7.43e-09 | 28 |
connective tissue cell | 1.69e-08 | 361 |
cardiocyte | 1.87e-08 | 16 |
vascular associated smooth muscle cell | 2.23e-08 | 32 |
cell of skeletal muscle | 1.59e-07 | 9 |
mesodermal cell | 8.96e-07 | 121 |
mesenchymal cell | 9.31e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.75e-22 | 78 |
somite | 6.36e-22 | 71 |
presomitic mesoderm | 6.36e-22 | 71 |
presumptive segmental plate | 6.36e-22 | 71 |
dermomyotome | 6.36e-22 | 71 |
trunk paraxial mesoderm | 6.36e-22 | 71 |
dense mesenchyme tissue | 7.23e-22 | 73 |
paraxial mesoderm | 2.64e-21 | 72 |
presumptive paraxial mesoderm | 2.64e-21 | 72 |
multilaminar epithelium | 7.48e-18 | 83 |
skeletal muscle tissue | 9.54e-18 | 62 |
striated muscle tissue | 9.54e-18 | 62 |
myotome | 9.54e-18 | 62 |
muscle tissue | 1.63e-17 | 64 |
musculature | 1.63e-17 | 64 |
musculature of body | 1.63e-17 | 64 |
trunk mesenchyme | 3.10e-17 | 122 |
mesenchyme | 3.93e-17 | 160 |
entire embryonic mesenchyme | 3.93e-17 | 160 |
integument | 4.78e-11 | 46 |
integumental system | 4.78e-11 | 46 |
unilaminar epithelium | 1.41e-10 | 148 |
skin of body | 6.12e-10 | 41 |
surface structure | 2.99e-09 | 99 |
connective tissue | 8.50e-09 | 371 |
mesoderm | 8.96e-09 | 315 |
mesoderm-derived structure | 8.96e-09 | 315 |
presumptive mesoderm | 8.96e-09 | 315 |
extraembryonic membrane | 4.24e-08 | 14 |
membranous layer | 4.24e-08 | 14 |
splanchnic layer of lateral plate mesoderm | 4.87e-08 | 83 |
extraembryonic structure | 7.65e-08 | 24 |
organ component layer | 7.79e-07 | 66 |