FFCP PHASE1:Hg19::chr20:45977321..45977326,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:45977321..45977326,- to FFCP PHASE1:Hg19::chr20:45977321..45977326,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23613 | |EntrezGene=23613 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=9397 | |HGNC=9397 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-462bp_to_uc010ghs.1_5end | |||
|cluster_id=chr20:45977321..45977326,- | |||
|description=CAGE_peak_18_at_ZMYND8_5end | |||
|id=chr20:45977321..45977326,- | |||
|ontology_enrichment_celltype=CL:0002322!6.64e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000064;1.34e-20;3!CL:0000067;1.34e-20;3!CL:0005012;1.34e-20;3!CL:0002304;1.34e-20;3!CL:0000306;2.89e-15;4!CL:0002222;2.89e-15;4!CL:0002224;2.89e-15;4!CL:0000650;3.53e-14;2!CL:1000500;3.53e-14;2!CL:1000618;3.53e-14;2!CL:1001318;3.53e-14;2!CL:0002173;3.53e-14;2!CL:0000075;4.70e-11;27!CL:1000746;6.12e-09;7!CL:1000612;6.12e-09;7!CL:0000342;1.04e-07;1!CL:0002565;1.04e-07;1!CL:0000669;1.62e-07;4!CL:1000449;4.42e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,1.88e-20,3;CL:0000067,1.88e-20,3;CL:0005012,1.88e-20,3;CL:0002304,1.88e-20,3;CL:0000306,3.62e-15,4;CL:0002222,3.62e-15,4;CL:0002224,3.62e-15,4;CL:0000650,3.92e-14,2;CL:1000500,3.92e-14,2;CL:1000618,3.92e-14,2;CL:1001318,3.92e-14,2;CL:0002173,3.92e-14,2;CL:0000075,5.57e-11,27;CL:1000746,5.13e-09,7;CL:1000612,5.13e-09,7;CL:0000342,7.97e-08,1;CL:0002565,7.97e-08,1;CL:0000669,1.70e-07,4;CL:1000449,3.55e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!2.26e-20!86;UBERON:0002346!8.12e-20!90;UBERON:0003075!1.15e-19!86;UBERON:0007284!1.15e-19!86;UBERON:0000073!1.28e-17!94;UBERON:0001016!1.28e-17!94;UBERON:0001017!1.46e-17!82;UBERON:0000033!1.50e-16!123;UBERON:0003056!4.89e-16!61;UBERON:0000153!1.18e-15!129;UBERON:0007811!1.18e-15!129;UBERON:0000924!1.36e-15!173;UBERON:0006601!1.36e-15!173;UBERON:0004121!2.93e-15!169;UBERON:0001049!1.47e-13!57;UBERON:0005068!1.47e-13!57;UBERON:0006241!1.47e-13!57;UBERON:0007135!1.47e-13!57;UBERON:0007625!2.34e-13!11;UBERON:0002616!9.39e-12!59;UBERON:0000955!2.18e-11!69;UBERON:0006238!2.18e-11!69;UBERON:0000922!5.87e-11!612;UBERON:0002780!2.48e-10!41;UBERON:0001890!2.48e-10!41;UBERON:0006240!2.48e-10!41;UBERON:0003080!6.52e-10!42;UBERON:0002020!4.83e-09!34;UBERON:0003528!4.83e-09!34;UBERON:0001893!5.35e-09!34;UBERON:0000468!6.31e-09!659;UBERON:0000923!1.28e-08!604;UBERON:0005291!1.28e-08!604;UBERON:0006598!1.28e-08!604;UBERON:0002532!1.28e-08!604;UBERON:0002791!1.46e-08!33;UBERON:0002050!1.55e-08!605;UBERON:0005423!1.55e-08!605;UBERON:0001869!5.66e-08!32;UBERON:0000991!7.87e-08!21;UBERON:0009196!7.87e-08!21;UBERON:0009117!7.87e-08!21;UBERON:0005564!7.87e-08!21;UBERON:0001456!8.54e-08!21;UBERON:0007023!1.22e-07!115;UBERON:0000019!1.37e-07!19;UBERON:0000047!1.37e-07!19;UBERON:0004088!1.37e-07!19;UBERON:0003072!1.37e-07!19;UBERON:0003071!1.37e-07!19;UBERON:0004128!1.37e-07!19;UBERON:0004176!2.72e-07!22;UBERON:0001950!3.84e-07!20;UBERON:0000956!3.91e-07!25;UBERON:0000203!3.91e-07!25;UBERON:0000970!4.99e-07!20;UBERON:0000992!6.41e-07!13;UBERON:0000020!9.73e-07!23 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;4.49e-37;11!UBERON:0000488;1.45e-26;4!UBERON:0001801;4.32e-22;14!UBERON:0000019;5.29e-21;19!UBERON:0000047;5.29e-21;19!UBERON:0004088;5.29e-21;19!UBERON:0010230;5.29e-21;19!UBERON:0001778;1.34e-20;3!UBERON:0001775;1.34e-20;3!UBERON:0000970;6.76e-20;20!UBERON:0002104;6.78e-19;21!UBERON:0001456;6.78e-19;21!UBERON:0002203;8.60e-18;6!UBERON:0001768;8.60e-18;6!UBERON:0002200;8.60e-18;6!UBERON:0000020;3.74e-17;23!UBERON:0001032;2.17e-16;24!UBERON:0004456;2.17e-16;24!UBERON:0010077;2.89e-15;4!UBERON:0005389;2.89e-15;4!UBERON:0000484;2.89e-15;4!UBERON:0000965;2.89e-15;4!UBERON:0001803;2.89e-15;4!UBERON:0003567;3.53e-14;2!UBERON:0003838;3.53e-14;2!UBERON:0003586;3.53e-14;2!UBERON:0005169;3.53e-14;2!UBERON:0002321;3.53e-14;2!UBERON:0005215;3.53e-14;2!UBERON:0002303;3.53e-14;2!UBERON:0002319;3.53e-14;2!UBERON:0010371;2.74e-12;31!UBERON:0006876;8.95e-10;11!UBERON:0000074;6.12e-09;7!UBERON:0001229;6.12e-09;7!UBERON:0001444;1.02e-07;48!UBERON:0002506;1.04e-07;1!UBERON:0001769;1.04e-07;1!UBERON:0003891;1.62e-07;4!UBERON:0006555;4.42e-07;15!UBERON:0004819;4.42e-07;15!UBERON:0001285;4.42e-07;15!UBERON:0007684;4.42e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,5.49e-37,11;UBERON:0000488,1.56e-26,4;UBERON:0001801,5.19e-22,14;UBERON:0001778,1.88e-20,3;UBERON:0001775,1.88e-20,3;UBERON:0000019,7.52e-20,20;UBERON:0000047,7.52e-20,20;UBERON:0010312,7.52e-20,20;UBERON:0004088,7.52e-20,20;UBERON:0010230,7.52e-20,20;UBERON:0003072,7.52e-20,20;UBERON:0004128,7.52e-20,20;UBERON:0003071,7.52e-20,20;UBERON:0000970,7.51e-19,21;UBERON:0002104,7.51e-19,21;UBERON:0001456,6.08e-18,22;UBERON:0002203,9.03e-18,6;UBERON:0001768,9.03e-18,6;UBERON:0002200,9.03e-18,6;UBERON:0000020,2.37e-16,24;UBERON:0001032,2.37e-16,24;UBERON:0004456,2.37e-16,24;UBERON:0010077,3.62e-15,4;UBERON:0005389,3.62e-15,4;UBERON:0000484,3.62e-15,4;UBERON:0002546,3.62e-15,4;UBERON:0000965,3.62e-15,4;UBERON:0001803,3.62e-15,4;UBERON:0003073,3.62e-15,4;UBERON:0005426,3.62e-15,4;UBERON:0003567,3.92e-14,2;UBERON:0003838,3.92e-14,2;UBERON:0003586,3.92e-14,2;UBERON:0005169,3.92e-14,2;UBERON:0002321,3.92e-14,2;UBERON:0005215,3.92e-14,2;UBERON:0002303,3.92e-14,2;UBERON:0002319,3.92e-14,2;UBERON:0005085,2.12e-12,31;UBERON:0006876,9.19e-10,11;UBERON:0001444,2.11e-09,49;UBERON:0010532,5.13e-09,7;UBERON:0000074,5.13e-09,7;UBERON:0001229,5.13e-09,7;UBERON:0001230,5.13e-09,7;UBERON:0003220,5.13e-09,7;UBERON:0005749,5.13e-09,7;UBERON:0004199,5.13e-09,7;UBERON:0004209,5.13e-09,7;UBERON:0004198,5.13e-09,7;UBERON:0003056,6.35e-09,61;UBERON:0000033,4.77e-08,56;UBERON:0005103,6.05e-08,8;UBERON:0000083,6.05e-08,8;UBERON:0009201,6.05e-08,8;UBERON:0006553,6.05e-08,8;UBERON:0003074,6.05e-08,8;UBERON:0003060,6.05e-08,8;UBERON:0000076,7.85e-08,8;UBERON:0002506,7.97e-08,1;UBERON:0001769,7.97e-08,1;UBERON:0003075,1.34e-07,82;UBERON:0007284,1.34e-07,82;UBERON:0003891,1.70e-07,4;UBERON:0004211,3.55e-07,15;UBERON:0009773,3.55e-07,15;UBERON:0001231,3.55e-07,15;UBERON:0001285,3.55e-07,15;UBERON:0007684,3.55e-07,15;UBERON:0004208,3.55e-07,15;UBERON:0002346,3.66e-07,86;UBERON:0000153,3.93e-07,62;UBERON:0007811,3.93e-07,62;UBERON:0000080,4.14e-07,9;UBERON:0002120,4.14e-07,9;UBERON:0004875,4.14e-07,9;UBERON:0005721,4.14e-07,9;UBERON:0005754,4.14e-07,9;UBERON:0007297,4.14e-07,9;UBERON:0006555,9.87e-07,16;UBERON:0004819,9.87e-07,16 | |||
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| ||
|short_description=p18@ZMYND8 | |||
}} | }} |
Latest revision as of 15:36, 16 September 2015
Short description: | p18@ZMYND8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_ZMYND8_5end |
Coexpression cluster: | NA |
Association with transcript: | -462bp_to_uc010ghs.1_5end |
EntrezGene: | ZMYND8 |
HGNC: | 9397 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 1.88e-20 | 3 |
ciliated epithelial cell | 1.88e-20 | 3 |
multi-ciliated epithelial cell | 1.88e-20 | 3 |
non-pigmented ciliary epithelial cell | 1.88e-20 | 3 |
crystallin accumulating cell | 3.62e-15 | 4 |
vertebrate lens cell | 3.62e-15 | 4 |
lens epithelial cell | 3.62e-15 | 4 |
mesangial cell | 3.92e-14 | 2 |
kidney interstitial cell | 3.92e-14 | 2 |
juxtaglomerular complex cell | 3.92e-14 | 2 |
renal interstitial pericyte | 3.92e-14 | 2 |
extraglomerular mesangial cell | 3.92e-14 | 2 |
columnar/cuboidal epithelial cell | 5.57e-11 | 27 |
glomerular cell | 5.13e-09 | 7 |
kidney corpuscule cell | 5.13e-09 | 7 |
pigment cell (sensu Vertebrata) | 7.97e-08 | 1 |
iris pigment epithelial cell | 7.97e-08 | 1 |
pericyte cell | 1.70e-07 | 4 |
epithelial cell of nephron | 3.55e-07 | 15 |