FFCP PHASE1:Hg19::chr11:394196..394258,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:394196..394258,+ to FFCP PHASE1:Hg19::chr11:394196..394258,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=11187 | |EntrezGene=11187 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9025 | |HGNC=9025 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y446,E9PK71 | |UniProt=Q9Y446,E9PK71 | ||
|association_with_transcript=0bp_to_ENST00000331563,ENST00000531857,ENST00000533069,NM_007183,uc001lpc.2_5end | |||
|cluster_id=chr11:394196..394258,+ | |||
|coexpression_cluster_id=C511 | |||
|description=CAGE_peak_1_at_PKP3_5end | |||
|id=chr11:394196..394258,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.66e-41!254;CL:0002076!7.32e-21!43;CL:0000223!5.63e-19!59;CL:0002251!7.00e-10!21;CL:0002368!2.32e-09!13;CL:0002159!1.85e-08!13;CL:0000082!3.11e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.04e-19;42!CL:0002251;7.71e-13;20!CL:0002368;4.81e-11;13!CL:0002159;6.46e-09;14!CL:0002202;1.99e-07;9!CL:0002632;1.99e-07;9!CL:0000082;2.85e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.65e-50,253;CL:0002076,2.61e-26,42;CL:0000223,1.63e-24,58;CL:0002251,7.91e-13,20;CL:0002368,4.92e-11,13;CL:0002159,6.20e-09,14;CL:0002202,2.03e-07,9;CL:0002632,2.03e-07,9;CL:0000082,3.09e-07,19;CL:0000076,4.01e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000223;6.59e-13;58!UBERON:0008947;1.60e-12;29!UBERON:0006595;1.34e-10;86 | |||
|ontology_enrichment_disease=DOID:305!1.38e-35!106;DOID:0050687!6.82e-27!143;DOID:162!6.94e-14!235;DOID:14566!8.23e-13!239;DOID:299!1.31e-10!25;DOID:1749!4.36e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:299;1.11e-12;25!DOID:305;3.67e-12;106!DOID:1749;1.08e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.06e-41,106;DOID:0050687,5.56e-29,143;DOID:162,7.22e-17,235;DOID:14566,7.90e-16,239;DOID:299,1.29e-12,25;DOID:1749,9.82e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.89e-33!169;UBERON:0000925!6.89e-33!169;UBERON:0006595!6.89e-33!169;UBERON:0001007!2.75e-25!155;UBERON:0001555!2.75e-25!155;UBERON:0007026!2.75e-25!155;UBERON:0000077!1.94e-22!130;UBERON:0001004!3.25e-22!72;UBERON:0004921!5.78e-22!129;UBERON:0004185!5.78e-22!129;UBERON:0000065!6.61e-18!53;UBERON:0001041!7.04e-17!98;UBERON:0008947!3.30e-15!38;UBERON:0003258!3.30e-15!38;UBERON:0000072!3.08e-14!46;UBERON:0000464!1.08e-13!104;UBERON:0000466!7.02e-12!126;UBERON:0005911!7.32e-12!82;UBERON:0005153!2.77e-11!37;UBERON:0005181!1.58e-09!35;UBERON:0005178!2.27e-09!34;UBERON:0002224!2.27e-09!34;UBERON:0005157!3.77e-09!51;UBERON:0003104!4.82e-09!238;UBERON:0009142!4.82e-09!238;UBERON:0000915!7.59e-09!52;UBERON:0000161!1.07e-08!35;UBERON:0005631!2.12e-08!14;UBERON:0000158!2.12e-08!14;UBERON:0000062!3.86e-08!511;UBERON:0002048!3.86e-08!22;UBERON:0000117!3.86e-08!22;UBERON:0000171!3.86e-08!22;UBERON:0000170!3.86e-08!22;UBERON:0005597!3.86e-08!22;UBERON:0000118!3.86e-08!22;UBERON:0005177!7.51e-08!107;UBERON:0004807!9.71e-08!28;UBERON:0001557!2.27e-07!19;UBERON:0001048!2.39e-07!168;UBERON:0001737!2.39e-07!9;UBERON:0004802!3.11e-07!19;UBERON:0000115!3.11e-07!19;UBERON:0004175!3.18e-07!25;UBERON:0005156!3.66e-07!59;UBERON:0000990!3.66e-07!59;UBERON:0000166!3.87e-07!21;UBERON:0003124!7.24e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;8.27e-14;44!UBERON:0000072;3.46e-12;37!UBERON:0001004;2.31e-11;65!UBERON:0004921;3.25e-10;33!UBERON:0004807;1.42e-09;22!UBERON:0005178;2.55e-09;34!UBERON:0002224;2.55e-09;34!UBERON:0005911;2.62e-09;36!UBERON:0005181;1.66e-08;35!UBERON:0001737;1.76e-08;9!UBERON:0001557;1.76e-08;9!UBERON:0002048;2.51e-08;22!UBERON:0000117;2.51e-08;22!UBERON:0000171;2.51e-08;22!UBERON:0000170;2.51e-08;22!UBERON:0000161;2.00e-07;19!UBERON:0000166;2.00e-07;19!UBERON:0001041;2.61e-07;14!UBERON:0004802;2.85e-07;19!UBERON:0000115;2.85e-07;19!UBERON:0001555;4.70e-07;54!UBERON:0004119;6.82e-07;158 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.75e-35,160;UBERON:0000925,1.75e-35,160;UBERON:0006595,1.75e-35,160;UBERON:0001007,5.43e-27,145;UBERON:0001555,5.43e-27,145;UBERON:0007026,5.43e-27,145;UBERON:0004921,2.50e-24,118;UBERON:0001004,1.42e-23,74;UBERON:0000065,3.06e-19,54;UBERON:0001041,4.13e-18,87;UBERON:0008947,7.32e-17,38;UBERON:0003258,7.32e-17,38;UBERON:0000072,5.47e-15,47;UBERON:0005911,1.88e-13,82;UBERON:0005153,7.75e-12,37;UBERON:0005178,2.14e-10,34;UBERON:0002224,2.14e-10,34;UBERON:0005631,5.03e-10,14;UBERON:0000158,5.03e-10,14;UBERON:0005181,7.27e-10,35;UBERON:0000161,8.55e-10,36;UBERON:0005177,9.30e-10,101;UBERON:0005157,1.77e-09,47;UBERON:0001737,1.81e-08,9;UBERON:0002048,2.61e-08,22;UBERON:0000117,2.61e-08,22;UBERON:0000171,2.61e-08,22;UBERON:0000170,2.61e-08,22;UBERON:0005597,2.61e-08,22;UBERON:0000118,2.61e-08,22;UBERON:0000166,3.85e-08,22;UBERON:0001557,3.93e-08,19;UBERON:0004175,4.46e-08,25;UBERON:0003124,6.75e-08,7;UBERON:0004807,1.09e-07,28;UBERON:0000915,1.81e-07,52;UBERON:0005156,2.88e-07,59;UBERON:0000990,2.88e-07,59;UBERON:0004802,3.09e-07,19;UBERON:0000115,3.09e-07,19;UBERON:0005795,3.42e-07,22;UBERON:0003975,6.10e-07,22;UBERON:0002530,6.41e-07,59;UBERON:0001008,7.28e-07,48;UBERON:0003100,7.36e-07,41 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0,0,0,0.261185628199839,18.4300452376132,110.252584539644,43.4698330539043,56.7099003191175,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,1.39334510984468,123.202444080176,98.795541359266,79.1273581756926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.383587685530591,0,0,0,0,0.973269740605272,0,0,0.087834785693126,1.24430121722827,102.002680721912,97.5163084523049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,106.406948722778,0.496971951695318,0,0,0,0,0.560677600142307,0,0,0,0.134710672069688,0,0,0,0.468642863667593,0,0.570471821544449,0.149448680551801,0,0.485618833104395,0.140450806702248,0,0,0,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0,0,0.226864366320042,0,0,0.211931901159562,0.300091096084402,0,0.257640540045629,0,0,0,0,0,0,0,0,0,63.1962989843981,41.184664209216,44.7415168806846,1.95157929807353,1.19276791489337,3.48581828608555,2.69518743039963,3.28017106138317,0.36497735907583,0,0,0,0,0,30.6414612103196,26.8049657224182,24.8241360779986,30.6617244196055,27.0170510674584,24.2016031493319,27.101092940193,26.4898977919217,30.7797725557112,0,0,0,0,0,0,0,0,23.3678033231916,0,57.2896489833025,91.0454201386718,51.6718918195783,39.6278545278507,0,0,0,0,0.117408694235822,0,0,0,35.5591979081674,18.0282094039923,0,0,0,38.4308719345786,26.8771405118175,23.8182163367209,51.8543846449492,56.0923501331947,111.947742316242,0,0,0.414656231081544,0.432359860250884,0.75745460055828,0.126995788584338,0,0,5.13217338068116,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,2.0694614258501,0,0,0,0.391602314925481,0,0,0,0,133.073003864908,71.5672389895137,63.1995713059032,0.248107807818777,0.61384789315225,0.280660094433074,0.128139149255701,0.511707249066704,0,0,0.462629081407967,0,0.328508624055237,0,0.348631135379878,27.4350950572982,45.5149687588457,48.0662762245379,0,0,0.393373244878272,6.31679458070376,3.77375151811632,2.35304930753057,1.46139224653261,0.844413031143006,1.13733384070897,0,0.215915916102139,0,0,0.501689773854853,3.3133915495855,4.15538004464362,4.47749509444357,0,0,0,0,0,6.4915837338065,0,0,29.2875424378048,35.7533135320087,0,0.096670718292122,0,0,0,0.214840489736547,0,0.0852266274161009,0,43.1393629092153,48.4318969760068,61.5093274223896,59.8854062664856,0,0,0,0,0,0,0,0,0,0.632758849437452,0.38126038784765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0.0982490410131212,0,0,0,0,0,0,46.3790583336968,73.7332503089366,92.5573371321242,6.3076346520442,47.7860963665065,60.6497312403452,97.111203624532,41.1204886370457,0,0,0,0,0,0,0,0,0,0,20.8284183583877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.0125351167426,0.439524537815682,0,0,0,149.454047445794,22.8662804241132,115.185263287212,0,0,0.111308705022906,7.41617434020418,7.81164010073576,1.59398390600856,5.8019622261541,10.3292426620253,1.84083628503879,0,0,17.3445917714341,11.0993128298878,0,2.46608514092334,0,0,0,0,0,13.0213880542617,28.5119599987598,2.89999830173917,47.9070417281954,13.2211898152238,23.8751558585616,5.51589397186343,0,0,0,0,0,0,0,0,8.93295400855719,54.9329552457697,14.3127480817063,0,16.1394733071642,12.6558278617779,22.8159481036217,90.915330523597,15.7547860651203,65.0302426742734,0,0,0,16.242887564437,13.7243774022418,11.0762247404056,15.1802986179348,0,6.54094000036884,7.1822435590025,20.0721361436196,0,20.9005005526486,22.8220516418615,14.664723478407,0,0,0,0,0.802577647298789,0,0,14.6748464199067,2.67058417487502,6.70793484843964,14.5188859258397,0.30607276163049,0.063186579628488,0,0,1.99396161812156,6.61983911750998,3.45326210247948,1.19472429772959,7.39984819677461,0,14.7525777584861,27.1438940837826,27.249531659666,8.38688007561745,0,10.5464401105103,11.6212014167035,14.3702049843116,66.825432360521,0,5.19755703795225,0.548167698587004,0,0.0633107959558787,38.719173781491,4.00794101257669,13.4475386685792,12.3881957940921,12.9681375438695,0,0,6.33841111147859,3.35481846026668,31.8186946732674,3.39760515184035,3.97490815986866,0.407992870545287,0.577901179803038,0,0,0,0,0,0,0,0,8.78587602195561,0.429226048136571,0,0,0,13.9795139432945,7.56318550149347,7.41742725430498,7.27958273625197,0,0,0,0.136203406111576,4.01882871162548,3.30094647833361,1.66176135211674,1.5748172408605,17.7974449548328,0,45.9545522010995,0.551639951094387,0.944182586429966,6.23041985464498,6.09576953731672,18.9996045346251,0,0,1.27134268827375,0,0,0,0,0,0.681552087141687,0.226624183040251,0,0,0,0,4.96151829864555,9.16259529011673,5.33937062838473,2.82967749179399,7.45630299624952,0,0,0,39.5771579817513,0,1.2534494701135,0.612691153526923,0,9.26619167876382,0,0,0,0,0,0,0,20.7467477217097,0,0,7.99903786973784,8.8983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| ||
|short_description=p1@PKP3 | |||
}} | }} |
Latest revision as of 22:44, 17 September 2015
Short description: | p1@PKP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PKP3_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | 0bp_to_ENST00000331563, ENST00000531857, ENST00000533069, NM_007183, uc001lpc.2_5end |
EntrezGene: | PKP3 |
HGNC: | 9025 |
UniProt: | Q9Y446E9PK71 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.65e-50 | 253 |
endo-epithelial cell | 2.61e-26 | 42 |
endodermal cell | 1.63e-24 | 58 |
epithelial cell of alimentary canal | 7.91e-13 | 20 |
respiratory epithelial cell | 4.92e-11 | 13 |
general ecto-epithelial cell | 6.20e-09 | 14 |
epithelial cell of tracheobronchial tree | 2.03e-07 | 9 |
epithelial cell of lower respiratory tract | 2.03e-07 | 9 |
epithelial cell of lung | 3.09e-07 | 19 |
squamous epithelial cell | 4.01e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.06e-41 | 106 |
cell type cancer | 5.56e-29 | 143 |
cancer | 7.22e-17 | 235 |
disease of cellular proliferation | 7.90e-16 | 239 |
adenocarcinoma | 1.29e-12 | 25 |
squamous cell carcinoma | 9.82e-12 | 14 |