FFCP PHASE1:Mm9::chr4:124805061..124805087,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:124805061..124805087,-
|short_description=p1@Zc3h12a
|description=CAGE_peak_1_at_Zc3h12a_5end
|association_with_transcript=0bp_to_ENSMUST00000036188_5end
...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=230738 | |EntrezGene=230738 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2291 | |||
|TSSclassifier=NA | |||
|UniProt=Q5D1E7 | |UniProt=Q5D1E7 | ||
|association_with_transcript=0bp_to_ENSMUST00000036188_5end | |||
|cluster_id=chr4:124805061..124805087,- | |||
|description=CAGE_peak_1_at_Zc3h12a_5end | |||
|id=chr4:124805061..124805087,- | |||
|ontology_enrichment_celltype=CL:0000063!1.29e-16!66;CL:0002320!1.36e-10!46;CL:0000134!1.36e-10!46;CL:0000219!2.72e-10!54;CL:0000988!2.67e-09!32;CL:0002032!2.67e-09!32;CL:0000037!2.67e-09!32;CL:0000566!2.67e-09!32;CL:0000837!2.67e-09!32;CL:0000838!1.37e-07!12;CL:0002031!3.34e-07!25;CL:0000084!5.46e-07!11;CL:0000827!5.46e-07!11;CL:0000066!7.21e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002320,4.04e-11,46;CL:0000134,4.04e-11,46;CL:0000219,1.50e-10,54;CL:0000988,9.49e-10,32;CL:0002032,9.49e-10,32;CL:0000037,9.49e-10,32;CL:0000837,9.49e-10,32;CL:0000838,5.98e-08,12;CL:0002031,1.62e-07,25;CL:0000084,2.58e-07,11;CL:0000827,2.58e-07,11;CL:0000066,6.15e-07,25;CL:0000542,8.48e-07,13;CL:0000051,8.48e-07,13;CL:0000791,8.61e-07,9;CL:0000789,8.61e-07,9;CL:0002420,8.61e-07,9;CL:0002419,8.61e-07,9;CL:0000790,8.61e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!7.01e-12!48;UBERON:0001007!2.18e-11!128;UBERON:0001555!2.18e-11!128;UBERON:0007026!2.18e-11!128;UBERON:0004119!3.64e-11!130;UBERON:0000925!3.64e-11!130;UBERON:0006595!3.64e-11!130;UBERON:0004921!1.35e-10!126;UBERON:0004185!1.35e-10!126;UBERON:0002384!1.36e-10!46;UBERON:0002390!1.48e-10!45;UBERON:0003061!1.48e-10!45;UBERON:0000344!3.27e-09!15;UBERON:0004923!1.97e-08!24;UBERON:0002405!2.56e-08!70;UBERON:0001242!2.86e-08!13;UBERON:0000060!2.86e-08!13;UBERON:0001262!2.86e-08!13;UBERON:0004786!2.86e-08!13;UBERON:0000490!4.61e-08!66;UBERON:0005409!5.15e-07!59;UBERON:0000072!5.57e-07!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,9.31e-14,116;UBERON:0001555,9.31e-14,116;UBERON:0007026,9.31e-14,116;UBERON:0004119,2.33e-13,118;UBERON:0000925,2.33e-13,118;UBERON:0006595,2.33e-13,118;UBERON:0004921,7.48e-13,114;UBERON:0002193,1.03e-12,48;UBERON:0002405,1.03e-12,48;UBERON:0002390,2.67e-11,45;UBERON:0003061,2.67e-11,45;UBERON:0002384,4.04e-11,46;UBERON:0005409,3.84e-10,47;UBERON:0000344,1.14e-09,15;UBERON:0004923,1.11e-08,24;UBERON:0001242,1.14e-08,13;UBERON:0001262,1.14e-08,13;UBERON:0004786,1.14e-08,13;UBERON:0000160,4.73e-08,31;UBERON:0000077,9.90e-08,35;UBERON:0000490,1.60e-07,66;UBERON:0000072,1.64e-07,27;UBERON:0004177,4.21e-07,29;UBERON:0005057,4.21e-07,29;UBERON:0006562,8.78e-07,24;UBERON:0001557,8.78e-07,24;UBERON:0001042,8.78e-07,24;UBERON:0008814,8.78e-07,24;UBERON:0009145,8.78e-07,24 | |||
|phase1_expression=0.480446541314382,140.288113871023,117.84480300189,91.3441918146627,97.1737716095914,95.8590642616891,101.621498659054,151.332535073527,212.87254789332,269.174205270292,29.7919264712379,24.0114198575963,72.5891094908312,82.6122802859525,7.32841475994458,11.9460407759997,4.89693314689703,69.2439452961332,66.3633858651776,71.2974615020691,3.74190476664707,12.113496046508,11.7539905112521,52.7974995218242,64.9228265420091,102.787521576589,120.613358924541,124.75784372513,59.477330289845,54.9425682876649,75.8318346441142,0.635030673459631,1.84519436275371,0,37.5507105676657,20.7793306698115,33.0754357145038,78.6839465785387,67.1948396290468,48.1641844455894,231.174974796189,143.439551841274,85.9353324865142,20.3952845120435,20.7822709000005,0.917733760808408,5.47673941043627,3.05235218932625,3.51497892375155,6.22175677037707,2.79972843250725,1.43752564364972,102.011824483104,103.001424165611,73.6045420121996,6.68874533693462,5.73066879877513,12.8918023069361,0,0,0,5.76035704517525,5.33576877666684,6.74924787961049,7.9109309005358,12.0781619540837,1.49800055259202,1.53687322128622,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0,0,0,0.56276261003168,0,0.294628585473668,0.142371680799103,0,3.48340489332647,0.831287161174641,101.742435534289,3.44169550792555,5.439770669662,2.69851595818909,2.59910566979068,2.68816132258401,5.75822122540183,4.94247935476367,2.59786004602869,4.94675404314476,0.845060518660083,8.98285341900225,10.1922095882658,0,7.36069539438128,9.37431502257865,11.1215377903252,6.39429726426736,29.7778566194247,3.26572705942614,0.346970653532272,0,0.461230994512117,0.150722640552623,1.17588707135705,2.13633205260448,4.94389935468748,8.96516012903452,7.07688441559899,1.45590164952668,7.50861162765338,1.93950101254089,31.6865994070808,0.585561594023094,0.628340120440365,55.6896380354729,111.428065790506,72.5882304502023,72.8112401128661,0.299581278809645,0,0.125654352112864,0.173824320192276,0.255715457330331,0.41557608911912,0.324482526135515,0.916554274652847,7.34001126599549,2.77995034277042,9.25944165900485,0,0.229902104433473,0.360124259610698,0,0.204109497453984,0,0.281105173679186,2.84573707812917,0,0.378212160335639,0.351902248327898,0.43839146485515,4.44875598760957,6.61679116392116,10.4948889568051,0,58.9859077343117,41.1756651383544,36.3729279226359,0.414251545071004,0,0.180062061461015,0.473489471170421,0.590292695242212,0,0.232533944750408,0,0.350296027101508,0.658239399653922,0.985004784474571,1.13496333364198,1.90059983652932,2.19550115291051,1.34206418760372,0,0,77.6484140011925,20.0982430664294,0.213288250535234,0.464473343720877,0.515469845288373,1.21010114774006,2.00140239460383,2.66315876557583,25.6245693234036,2.63518327558417,3.77002813200404,5.37182474511107,4.09424582950152,26.0657628509724,12.9682829924817,15.732160587095,0.379335801906163,0.228497025219458,1.1270773567308,0.407302655690628,0.193952487167626,1.19230893813542,0.885311519739602,1.77132177575523,0.941992367048249,2.34454611451421,3.26097889795864,0.667380422864376,1.37591296579242,0.224862112384854,0.202860121388503,0.241177159752417,1.01850340712568,1.15078454980324,1.94562272130042,0.823684239564244,2.87536413054709,2.23284568601102,0.312037673114561,0.505157755894224,1.61457672169721,2.41221760681684,8.49864674766381,0,0.162964976442026,0.169745085775188,0,0.502518772325447,3.57065461329021,2.34160377429359,2.52216230569906,1.55025282754142,3.18909537314974,6.71839590334526,7.7708241839653,6.79850575333104,9.04747703635634,19.0366989336548,7.37646409528554,6.34654516500885,0.642202359951168,0.234423373184406,0.327869890753351,2.27223834483936,1.26203287766503,0.390438744296638,0.215423397732799,0.716906393857656,0.222798674082394,0.283076530788832,0.404810701674894,0.292255857911312,0.395287777946524,0.321321316421807,2.6968616189571,0,0.162886959353576,6.26886467295635,1.32745138339963,0.485561272309963,0.302323556964751,1.50884063804718,0.590603785761546,1.22974059177571,3.35956781118687,0.363533729477506,1.42598951353889,2.84433082142234,5.27093042874994,0,0.680879211507576,0,0,0,0.177340233642274,0.356737635204141,0.329098041204242,3.34911444026059,2.81606049676452,0.42366414172764,4.6310963591542,17.8077153176798,6.29711264114032,4.644095219468,7.75920236020387,13.1312719796049,17.488850197791,0.556275906031529,12.6444451790411,1.03193433981611,4.25947412950337,5.08594833912666,10.798843989961,12.3540213531522,262.616674340506,248.973633683788,198.316962409348,21.9574242143476,0,1.21991680276109,3.78018692876304,10.0362382086945,10.9181281873089,9.03591120778299,10.6622957885683,17.53764811293,20.6087807533951,6.83473244395618,0,0,0.165458490457098,0.194451188344048,0.516639293910924,0.168956125490778,0.58678619322877,0.13020438484395,0.104859344425711,0,0.288030006257865,11.0603892219862,3.24360344464263,4.31386020092274,4.41730798124503,5.54982756569192,5.16571522431289,7.81270421879797,5.90758108698309,8.98601404538514,10.36412570508,9.17518284745249,9.94070383545475,7.69694733122636,13.3239668486989,18.3651610728321,1.77588762699252,0.897138566094757,0.839423081820392,9.65947970160952,8.07034644440082,34.4325053622458,59.8087777630594,4.51414893631827,0,0,0,0.171853182343688,0,0,0,0,0.453142408984205,0,0.103787347584177,0.798049746802062,0,1.21553358534147,0.628839487883947,0.735374033800057,1.33348036680969,1.85431551515005,2.24643446714271,0.758091635291392,2.02783439912192,1.69763707247469,2.52832070168682,1.47257850531199,1.78049953762401,0.476293691283074,0.927074607558844,1.15745532278223,1.64834360321323,2.06078488188156,1.37147700954166,2.8396128985494,3.33810665926249,2.32554266611726,2.07040636913727,2.19997980518359,1.82927972872773,0.789209134313529,1.7654534799962,1.12228454331548,1.42362021749009,1.77308068276014,0.818462086339379,2.01417893541756,2.12197272079256,2.74791635731741,2.57324769289949,1.28922632428979,2.67803664896381,3.75005412503176,1.85494268496337 | |phase1_expression=0.480446541314382,140.288113871023,117.84480300189,91.3441918146627,97.1737716095914,95.8590642616891,101.621498659054,151.332535073527,212.87254789332,269.174205270292,29.7919264712379,24.0114198575963,72.5891094908312,82.6122802859525,7.32841475994458,11.9460407759997,4.89693314689703,69.2439452961332,66.3633858651776,71.2974615020691,3.74190476664707,12.113496046508,11.7539905112521,52.7974995218242,64.9228265420091,102.787521576589,120.613358924541,124.75784372513,59.477330289845,54.9425682876649,75.8318346441142,0.635030673459631,1.84519436275371,0,37.5507105676657,20.7793306698115,33.0754357145038,78.6839465785387,67.1948396290468,48.1641844455894,231.174974796189,143.439551841274,85.9353324865142,20.3952845120435,20.7822709000005,0.917733760808408,5.47673941043627,3.05235218932625,3.51497892375155,6.22175677037707,2.79972843250725,1.43752564364972,102.011824483104,103.001424165611,73.6045420121996,6.68874533693462,5.73066879877513,12.8918023069361,0,0,0,5.76035704517525,5.33576877666684,6.74924787961049,7.9109309005358,12.0781619540837,1.49800055259202,1.53687322128622,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0,0,0,0.56276261003168,0,0.294628585473668,0.142371680799103,0,3.48340489332647,0.831287161174641,101.742435534289,3.44169550792555,5.439770669662,2.69851595818909,2.59910566979068,2.68816132258401,5.75822122540183,4.94247935476367,2.59786004602869,4.94675404314476,0.845060518660083,8.98285341900225,10.1922095882658,0,7.36069539438128,9.37431502257865,11.1215377903252,6.39429726426736,29.7778566194247,3.26572705942614,0.346970653532272,0,0.461230994512117,0.150722640552623,1.17588707135705,2.13633205260448,4.94389935468748,8.96516012903452,7.07688441559899,1.45590164952668,7.50861162765338,1.93950101254089,31.6865994070808,0.585561594023094,0.628340120440365,55.6896380354729,111.428065790506,72.5882304502023,72.8112401128661,0.299581278809645,0,0.125654352112864,0.173824320192276,0.255715457330331,0.41557608911912,0.324482526135515,0.916554274652847,7.34001126599549,2.77995034277042,9.25944165900485,0,0.229902104433473,0.360124259610698,0,0.204109497453984,0,0.281105173679186,2.84573707812917,0,0.378212160335639,0.351902248327898,0.43839146485515,4.44875598760957,6.61679116392116,10.4948889568051,0,58.9859077343117,41.1756651383544,36.3729279226359,0.414251545071004,0,0.180062061461015,0.473489471170421,0.590292695242212,0,0.232533944750408,0,0.350296027101508,0.658239399653922,0.985004784474571,1.13496333364198,1.90059983652932,2.19550115291051,1.34206418760372,0,0,77.6484140011925,20.0982430664294,0.213288250535234,0.464473343720877,0.515469845288373,1.21010114774006,2.00140239460383,2.66315876557583,25.6245693234036,2.63518327558417,3.77002813200404,5.37182474511107,4.09424582950152,26.0657628509724,12.9682829924817,15.732160587095,0.379335801906163,0.228497025219458,1.1270773567308,0.407302655690628,0.193952487167626,1.19230893813542,0.885311519739602,1.77132177575523,0.941992367048249,2.34454611451421,3.26097889795864,0.667380422864376,1.37591296579242,0.224862112384854,0.202860121388503,0.241177159752417,1.01850340712568,1.15078454980324,1.94562272130042,0.823684239564244,2.87536413054709,2.23284568601102,0.312037673114561,0.505157755894224,1.61457672169721,2.41221760681684,8.49864674766381,0,0.162964976442026,0.169745085775188,0,0.502518772325447,3.57065461329021,2.34160377429359,2.52216230569906,1.55025282754142,3.18909537314974,6.71839590334526,7.7708241839653,6.79850575333104,9.04747703635634,19.0366989336548,7.37646409528554,6.34654516500885,0.642202359951168,0.234423373184406,0.327869890753351,2.27223834483936,1.26203287766503,0.390438744296638,0.215423397732799,0.716906393857656,0.222798674082394,0.283076530788832,0.404810701674894,0.292255857911312,0.395287777946524,0.321321316421807,2.6968616189571,0,0.162886959353576,6.26886467295635,1.32745138339963,0.485561272309963,0.302323556964751,1.50884063804718,0.590603785761546,1.22974059177571,3.35956781118687,0.363533729477506,1.42598951353889,2.84433082142234,5.27093042874994,0,0.680879211507576,0,0,0,0.177340233642274,0.356737635204141,0.329098041204242,3.34911444026059,2.81606049676452,0.42366414172764,4.6310963591542,17.8077153176798,6.29711264114032,4.644095219468,7.75920236020387,13.1312719796049,17.488850197791,0.556275906031529,12.6444451790411,1.03193433981611,4.25947412950337,5.08594833912666,10.798843989961,12.3540213531522,262.616674340506,248.973633683788,198.316962409348,21.9574242143476,0,1.21991680276109,3.78018692876304,10.0362382086945,10.9181281873089,9.03591120778299,10.6622957885683,17.53764811293,20.6087807533951,6.83473244395618,0,0,0.165458490457098,0.194451188344048,0.516639293910924,0.168956125490778,0.58678619322877,0.13020438484395,0.104859344425711,0,0.288030006257865,11.0603892219862,3.24360344464263,4.31386020092274,4.41730798124503,5.54982756569192,5.16571522431289,7.81270421879797,5.90758108698309,8.98601404538514,10.36412570508,9.17518284745249,9.94070383545475,7.69694733122636,13.3239668486989,18.3651610728321,1.77588762699252,0.897138566094757,0.839423081820392,9.65947970160952,8.07034644440082,34.4325053622458,59.8087777630594,4.51414893631827,0,0,0,0.171853182343688,0,0,0,0,0.453142408984205,0,0.103787347584177,0.798049746802062,0,1.21553358534147,0.628839487883947,0.735374033800057,1.33348036680969,1.85431551515005,2.24643446714271,0.758091635291392,2.02783439912192,1.69763707247469,2.52832070168682,1.47257850531199,1.78049953762401,0.476293691283074,0.927074607558844,1.15745532278223,1.64834360321323,2.06078488188156,1.37147700954166,2.8396128985494,3.33810665926249,2.32554266611726,2.07040636913727,2.19997980518359,1.82927972872773,0.789209134313529,1.7654534799962,1.12228454331548,1.42362021749009,1.77308068276014,0.818462086339379,2.01417893541756,2.12197272079256,2.74791635731741,2.57324769289949,1.28922632428979,2.67803664896381,3.75005412503176,1.85494268496337 | ||
|short_description=p1@Zc3h12a | |||
}} | }} |
Latest revision as of 08:06, 26 September 2015
Short description: | p1@Zc3h12a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zc3h12a_5end |
Coexpression cluster: | MCL_coexpression_mm9:2291 |
Association with transcript: | 0bp_to_ENSMUST00000036188_5end |
EntrezGene: | Zc3h12a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
connective tissue cell | 4.04e-11 | 46 |
mesenchymal cell | 4.04e-11 | 46 |
motile cell | 1.50e-10 | 54 |
hematopoietic cell | 9.49e-10 | 32 |
hematopoietic oligopotent progenitor cell | 9.49e-10 | 32 |
hematopoietic stem cell | 9.49e-10 | 32 |
hematopoietic multipotent progenitor cell | 9.49e-10 | 32 |
lymphoid lineage restricted progenitor cell | 5.98e-08 | 12 |
hematopoietic lineage restricted progenitor cell | 1.62e-07 | 25 |
T cell | 2.58e-07 | 11 |
pro-T cell | 2.58e-07 | 11 |
epithelial cell | 6.15e-07 | 25 |
lymphocyte | 8.48e-07 | 13 |
common lymphoid progenitor | 8.48e-07 | 13 |
mature alpha-beta T cell | 8.61e-07 | 9 |
alpha-beta T cell | 8.61e-07 | 9 |
immature T cell | 8.61e-07 | 9 |
mature T cell | 8.61e-07 | 9 |
immature alpha-beta T cell | 8.61e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
digestive system | 9.31e-14 | 116 |
digestive tract | 9.31e-14 | 116 |
primitive gut | 9.31e-14 | 116 |
endoderm-derived structure | 2.33e-13 | 118 |
endoderm | 2.33e-13 | 118 |
presumptive endoderm | 2.33e-13 | 118 |
subdivision of digestive tract | 7.48e-13 | 114 |
hemolymphoid system | 1.03e-12 | 48 |
immune system | 1.03e-12 | 48 |
hematopoietic system | 2.67e-11 | 45 |
blood island | 2.67e-11 | 45 |
connective tissue | 4.04e-11 | 46 |
gastrointestinal system | 3.84e-10 | 47 |
mucosa | 1.14e-09 | 15 |
organ component layer | 1.11e-08 | 24 |
intestinal mucosa | 1.14e-08 | 13 |
wall of intestine | 1.14e-08 | 13 |
gastrointestinal system mucosa | 1.14e-08 | 13 |
intestine | 4.73e-08 | 31 |
mixed endoderm/mesoderm-derived structure | 9.90e-08 | 35 |
unilaminar epithelium | 1.60e-07 | 66 |
segment of respiratory tract | 1.64e-07 | 27 |
hemopoietic organ | 4.21e-07 | 29 |
immune organ | 4.21e-07 | 29 |
pharynx | 8.78e-07 | 24 |
upper respiratory tract | 8.78e-07 | 24 |
chordate pharynx | 8.78e-07 | 24 |
pharyngeal arch system | 8.78e-07 | 24 |
pharyngeal region of foregut | 8.78e-07 | 24 |