FFCP PHASE1:Mm9::chr2:3341395..3341479,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:3341395..3341479,+
|short_description=p1@Dclre1c
|description=CAGE_peak_1_at_Dclre1c_5end
|association_with_transcript=0bp_to_ENSMUST00000061852,ENSMUST000...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=227525 | |EntrezGene=227525 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1862 | |||
|TSSclassifier=NA | |||
|UniProt=Q8K4J0,E9Q4K8,Q32MX8 | |UniProt=Q8K4J0,E9Q4K8,Q32MX8 | ||
|association_with_transcript=0bp_to_ENSMUST00000061852,ENSMUST00000100462,ENSMUST00000100463,ENSMUST00000102988,ENSMUST00000115066,ENSMUST00000115067,ENSMUST00000131433,ENSMUST00000132565,ENSMUST00000146027,NM_001110214,NM_146114,NM_175683,uc008idy.2,uc008idz.2,uc008iea.2,uc008ieb.2,uc012bor.1,uc012bos.1_5end | |||
|cluster_id=chr2:3341395..3341479,+ | |||
|description=CAGE_peak_1_at_Dclre1c_5end | |||
|id=chr2:3341395..3341479,+ | |||
|ontology_enrichment_celltype=CL:0002031!6.66e-10!25;CL:0000838!1.00e-07!12;CL:0000988!1.01e-07!32;CL:0002032!1.01e-07!32;CL:0000037!1.01e-07!32;CL:0000566!1.01e-07!32;CL:0000837!1.01e-07!32;CL:0000542!2.70e-07!13;CL:0000051!2.70e-07!13;CL:0000084!4.46e-07!11;CL:0000827!4.46e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,6.66e-10,25;CL:0000838,1.00e-07,12;CL:0000988,1.01e-07,32;CL:0002032,1.01e-07,32;CL:0000037,1.01e-07,32;CL:0000837,1.01e-07,32;CL:0000542,2.70e-07,13;CL:0000051,2.70e-07,13;CL:0000084,4.46e-07,11;CL:0000827,4.46e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!1.34e-12!70;UBERON:0002193!5.93e-12!48;UBERON:0002390!3.11e-11!45;UBERON:0003061!3.11e-11!45;UBERON:0005057!7.23e-10!51;UBERON:0004177!7.77e-10!29;UBERON:0003408!6.99e-08!24;UBERON:0006562!7.90e-08!24;UBERON:0001557!7.90e-08!24;UBERON:0001042!7.90e-08!24;UBERON:0008814!7.90e-08!24;UBERON:0009145!7.90e-08!24;UBERON:0002370!1.25e-07!23;UBERON:0000974!1.25e-07!23;UBERON:0004807!1.25e-07!23;UBERON:0005058!1.25e-07!23;UBERON:0003351!1.25e-07!23;UBERON:0009113!1.25e-07!23;UBERON:0003295!1.25e-07!23;UBERON:0009722!1.25e-07!23;UBERON:0005562!1.25e-07!23;UBERON:0007690!1.25e-07!23;UBERON:0001007!1.41e-07!128;UBERON:0001555!1.41e-07!128;UBERON:0007026!1.41e-07!128;UBERON:0004119!2.21e-07!130;UBERON:0000925!2.21e-07!130;UBERON:0006595!2.21e-07!130;UBERON:0004921!2.30e-07!126;UBERON:0004185!2.30e-07!126;UBERON:0000077!6.10e-07!97;UBERON:0003929!7.65e-07!55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,5.93e-12,48;UBERON:0002405,5.93e-12,48;UBERON:0002390,3.11e-11,45;UBERON:0003061,3.11e-11,45;UBERON:0000077,1.88e-10,35;UBERON:0004177,7.77e-10,29;UBERON:0005057,7.77e-10,29;UBERON:0001007,6.60e-08,116;UBERON:0001555,6.60e-08,116;UBERON:0007026,6.60e-08,116;UBERON:0003408,6.99e-08,24;UBERON:0006562,7.90e-08,24;UBERON:0001557,7.90e-08,24;UBERON:0001042,7.90e-08,24;UBERON:0008814,7.90e-08,24;UBERON:0009145,7.90e-08,24;UBERON:0004921,1.08e-07,114;UBERON:0004119,1.09e-07,118;UBERON:0000925,1.09e-07,118;UBERON:0006595,1.09e-07,118;UBERON:0002370,1.25e-07,23;UBERON:0000974,1.25e-07,23;UBERON:0004807,1.25e-07,23;UBERON:0005058,1.25e-07,23;UBERON:0003351,1.25e-07,23;UBERON:0009113,1.25e-07,23;UBERON:0003295,1.25e-07,23;UBERON:0009722,1.25e-07,23;UBERON:0005562,1.25e-07,23;UBERON:0007690,1.25e-07,23;UBERON:0001041,7.62e-07,80;UBERON:0003929,7.65e-07,55 | |||
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| |phase1_expression=6.56610273129655,12.2141392673776,9.09998478779072,6.95667686005709,16.5295590882295,10.2406355866253,7.00837921786577,24.9208014242242,67.4377979106484,56.4095508436004,36.4694272320326,31.1909141671765,29.7889270080298,30.5971408466491,13.6575002344422,15.9955461237963,9.09430441566591,36.1204179335182,33.044578498983,42.014575528005,12.4163203620562,14.1986060217266,18.5451850288644,11.5194544411253,11.0116454912242,8.6134794617253,6.8921919385452,11.635446565038,8.55105387553682,7.05684363327806,11.0865255327652,15.2407361630311,23.3724619282137,15.8481681015439,6.64358725427932,7.81302833184914,7.14592746918292,37.6678467663217,25.0027310247616,40.3113282859825,68.2348526115977,53.2775478267588,50.9785870682711,6.79842817068117,7.50189291024408,4.9557623083654,2.34717403304412,2.18025156380447,1.5378032791413,1.36100929351998,2.79972843250725,2.87505128729943,53.8582165445334,27.5637613964311,26.8875039313971,4.11615097657515,4.87106847895886,5.67239301505187,4.85559506063035,2.64495489636016,4.43681982454325,2.37191172448392,1.77858959222228,12.1486461832989,13.8441290759376,14.9200824138681,5.99200221036809,4.99483796918021,9.33206510776299,4.59020190327748,3.78584930432488,5.42736870367227,4.41737081903227,5.63457676388789,5.36734637702124,8.27296907949019,0,4.85211884723713,4.30098293117482,4.87979264601717,4.29991924931325,7.8137005583514,5.58365998002762,8.4414391504752,7.02871939773326,5.30331453852602,5.12538050876771,6.33758115806022,6.43672643332064,10.1265890543093,13.6236309689789,4.30211938490693,8.15965600449301,10.7940638327563,13.6453047664011,13.8888335000174,6.74133216632409,6.81721290312231,3.63700406444016,4.59341446863442,6.90132756905734,6.41632387071589,0,0,3.89683873820185,5.82727690592727,4.54972000513305,10.1623652949963,69.6542907010892,10.2425075954729,5.89850111004862,7.61163695780353,5.5347719341454,9.79697163592047,12.346814249249,7.28866229712118,8.40462890296871,13.3031408366319,18.5768215909474,7.44127509758082,18.9923705875938,13.091631834651,18.6391761218122,8.19786231632332,11.9384622883669,11.7510245395952,10.9031763300387,6.59893004092748,9.40319680340679,10.4853447583376,4.57500602818627,8.67015029578764,11.8200537730748,11.7629110371952,7.2725815595846,9.24775199486219,7.94347038032467,17.7901967972433,8.84529654517861,6.73413938836717,6.76626303406059,4.82794419310293,3.96136685571768,11.7549757911858,13.1310443362063,14.2206229516183,10.8694000489285,8.01980449290949,3.66465587985832,6.42960672570586,8.09375171154165,7.45265490253754,10.5657954705727,13.2335823278423,12.7584924572925,6.76716507182877,8.42655824775882,8.4924809347856,8.24074148247219,6.62802472113606,6.56672967947069,6.12211008967451,6.15536312521547,5.1158700254325,5.24508183817086,5.34828072925938,4.02410102099429,8.29033930806903,7.24063339619314,7.55170334763838,6.80978000185188,5.26319954731196,7.02560368931362,12.2127841071938,11.9865270681553,8.54108282748061,15.1992640172547,11.9002754998595,9.17139477301506,5.80591679651096,10.3093969057675,10.8909103296605,10.6741461045538,10.2721838100782,10.4396393539793,8.39964669092456,11.0587491872119,13.9269530428806,11.5028811400281,7.19055526923377,13.400559092231,12.5459002150251,3.79335801906163,6.28366819353509,5.63538678365402,7.73875045812194,7.95205197387266,11.01132372278,8.97958827164453,9.59465961867414,11.7749045881031,8.51440431060424,8.30067355844017,13.0139182458553,11.0073037263394,14.3911751926306,10.9544465549792,13.9882752656402,13.2405442926338,10.3570609482292,19.7804976665543,8.51140380883053,11.5014565221884,12.6527922207291,8.7370548472077,8.33510297225469,9.14926808961752,11.0962009913574,14.2259956428286,3.60033682363921,7.82231886921724,5.60158783058121,6.80601720036656,10.5528942188344,9.99783291721258,7.61021226645415,10.5615546551148,11.9590932410338,11.9591076493115,13.109065177259,15.5416483679306,16.2006945611293,88.9668575241706,123.466590226847,19.1788066477424,21.2471294654644,7.38532713943843,8.79087649441524,2.62295912602681,8.58401152494868,6.62567260774139,7.41833614163613,7.10897212518236,9.08081432219698,11.8083297263669,11.0399847007645,6.8817819284732,10.2289550268959,7.90575555893047,10.6036034419196,12.2068473279111,5.34196811001766,8.95878276444668,20.1263550026493,5.30980553359851,8.01176099311439,4.53485335447127,12.0707251043775,4.72483028609236,11.6825356218692,11.3708448994017,14.9048829085777,13.1904030002347,10.4292130118819,8.4334886859999,11.3449097573006,14.6389030474129,7.92268813737765,5.17434735131018,5.5727629108214,7.44828981297549,7.31312152168489,6.74650984468696,6.69822888052118,6.10146440965647,11.0152676849186,35.2845436887939,20.281009111802,17.2766936564619,14.4147890578292,13.130957840345,16.7423717739962,6.99554007911642,9.45669040253599,19.4792804109552,11.7640514739037,21.2973706475168,18.8368457004691,20.6408283858748,17.3871411636957,10.7086410896129,9.37674730568509,10.0885980877229,8.59203556213602,5.69404788446044,7.9294592179471,6.80433647177348,7.7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| ||
|short_description=p1@Dclre1c | |||
}} | }} |
Latest revision as of 15:09, 26 September 2015
Short description: | p1@Dclre1c |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dclre1c_5end |
Coexpression cluster: | MCL_coexpression_mm9:1862 |
Association with transcript: | 0bp_to_ENSMUST00000061852, ENSMUST00000100462, ENSMUST00000100463, ENSMUST00000102988, ENSMUST00000115066, ENSMUST00000115067, ENSMUST00000131433, ENSMUST00000132565, ENSMUST00000146027, NM_001110214, NM_146114, NM_175683, uc008idy.2, uc008idz.2, uc008iea.2, uc008ieb.2, uc012bor.1, uc012bos.1_5end |
EntrezGene: | Dclre1c |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 6.66e-10 | 25 |
lymphoid lineage restricted progenitor cell | 1.00e-07 | 12 |
hematopoietic cell | 1.01e-07 | 32 |
hematopoietic oligopotent progenitor cell | 1.01e-07 | 32 |
hematopoietic stem cell | 1.01e-07 | 32 |
hematopoietic multipotent progenitor cell | 1.01e-07 | 32 |
lymphocyte | 2.70e-07 | 13 |
common lymphoid progenitor | 2.70e-07 | 13 |
T cell | 4.46e-07 | 11 |
pro-T cell | 4.46e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 5.93e-12 | 48 |
immune system | 5.93e-12 | 48 |
hematopoietic system | 3.11e-11 | 45 |
blood island | 3.11e-11 | 45 |
mixed endoderm/mesoderm-derived structure | 1.88e-10 | 35 |
hemopoietic organ | 7.77e-10 | 29 |
immune organ | 7.77e-10 | 29 |
digestive system | 6.60e-08 | 116 |
digestive tract | 6.60e-08 | 116 |
primitive gut | 6.60e-08 | 116 |
gland of gut | 6.99e-08 | 24 |
pharynx | 7.90e-08 | 24 |
upper respiratory tract | 7.90e-08 | 24 |
chordate pharynx | 7.90e-08 | 24 |
pharyngeal arch system | 7.90e-08 | 24 |
pharyngeal region of foregut | 7.90e-08 | 24 |
subdivision of digestive tract | 1.08e-07 | 114 |
endoderm-derived structure | 1.09e-07 | 118 |
endoderm | 1.09e-07 | 118 |
presumptive endoderm | 1.09e-07 | 118 |
thymus | 1.25e-07 | 23 |
neck | 1.25e-07 | 23 |
respiratory system epithelium | 1.25e-07 | 23 |
hemolymphoid system gland | 1.25e-07 | 23 |
pharyngeal epithelium | 1.25e-07 | 23 |
thymic region | 1.25e-07 | 23 |
pharyngeal gland | 1.25e-07 | 23 |
entire pharyngeal arch endoderm | 1.25e-07 | 23 |
thymus primordium | 1.25e-07 | 23 |
early pharyngeal endoderm | 1.25e-07 | 23 |
foregut | 7.62e-07 | 80 |
gut epithelium | 7.65e-07 | 55 |