FFCP PHASE1:Mm9::chr5:123439052..123439089,-: Difference between revisions
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{{FFCP|EntrezGene=30841|HGNC=|MCL_coexpression_id=7|UniProt=Q6P1G2,D3YUE3|association_with_transcript=11bp_to_ENSMUST00000123479,NM_001003953,uc008zms.1,uc008zmu.1,uc008zmv.1_5end|description=CAGE_peak_4_at_Kdm2b_5end|id=chr5:123439052..123439089,-|ontology_enrichment_celltype=CL:0000542!9.25e-11!13;CL:0000051!9.25e-11!13;CL:0000838!1.17e-10!12;CL:0000084!7.87e-10!11;CL:0000827!7.87e-10!11;CL:0000791!4.55e-09!9;CL:0000789!4.55e-09!9;CL:0002420!4.55e-09!9;CL:0002419!4.55e-09!9;CL:0000790!4.55e-09!9;CL:0000624!3.22e-08!8;CL:0000738!5.06e-08!17;CL:0002087!5.06e-08!17;CL:0000988!8.90e-07!32;CL:0002032!8.90e-07!32;CL:0000037!8.90e-07!32;CL:0000566!8.90e-07!32;CL:0000837!8.90e-07!32|ontology_enrichment_celltype_v019_2=CL:0000791,1.30e-29,9;CL:0000789,1.30e-29,9;CL:0002420,1.30e-29,9;CL:0002419,1.30e-29,9;CL:0000790,1.30e-29,9;CL:0000838,6.11e-27,12;CL:0000624,1.98e-26,8;CL:0000542,1.02e-24,13;CL:0000051,1.02e-24,13;CL:0000084,6.20e-24,11;CL:0000827,6.20e-24,11;CL:0000893,3.37e-20,6;CL:0002489,3.37e-20,6;CL:0000898,3.37e-20,6;CL:0000809,3.37e-20,6;CL:0000810,3.37e-20,6;CL:0000895,3.37e-20,6;CL:0000808,3.37e-20,6;CL:0000894,3.37e-20,6;CL:0000806,3.37e-20,6;CL:0000807,3.37e-20,6;CL:0000805,3.37e-20,6;CL:0002425,3.37e-20,6;CL:0002436,3.37e-20,6;CL:0002427,3.37e-20,6;CL:0002428,3.37e-20,6;CL:0002429,3.37e-20,6;CL:0002433,3.37e-20,6;CL:0002431,3.37e-20,6;CL:0002432,3.37e-20,6;CL:0000738,1.90e-18,17;CL:0002087,1.90e-18,17;CL:0002031,6.38e-12,25;CL:0000988,6.83e-09,32;CL:0002032,6.83e-09,32;CL:0000037,6.83e-09,32;CL:0000837,6.83e-09,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002370!2.92e-09!23;UBERON:0000974!2.92e-09!23;UBERON:0004807!2.92e-09!23;UBERON:0005058!2.92e-09!23;UBERON:0003351!2.92e-09!23;UBERON:0009113!2.92e-09!23;UBERON:0003295!2.92e-09!23;UBERON:0009722!2.92e-09!23;UBERON:0005562!2.92e-09!23;UBERON:0007690!2.92e-09!23;UBERON:0006562!1.52e-08!24;UBERON:0003408!1.52e-08!24;UBERON:0001557!1.52e-08!24;UBERON:0001042!1.52e-08!24;UBERON:0008814!1.52e-08!24;UBERON:0009145!1.52e-08!24;UBERON:0004177!6.59e-08!29;UBERON:0000072!1.48e-07!27|ontology_enrichment_uberon_v019_2=UBERON:0002370,5.07e-21,23;UBERON:0000974,5.07e-21,23;UBERON:0004807,5.07e-21,23;UBERON:0005058,5.07e-21,23;UBERON:0003351,5.07e-21,23;UBERON:0009113,5.07e-21,23;UBERON:0003295,5.07e-21,23;UBERON:0009722,5.07e-21,23;UBERON:0005562,5.07e-21,23;UBERON:0007690,5.07e-21,23;UBERON:0006562,4.91e-20,24;UBERON:0003408,4.91e-20,24;UBERON:0001557,4.91e-20,24;UBERON:0001042,4.91e-20,24;UBERON:0008814,4.91e-20,24;UBERON:0009145,4.91e-20,24;UBERON:0000072,1.63e-17,27;UBERON:0004177,4.00e-16,29;UBERON:0005057,4.00e-16,29;UBERON:0000077,6.61e-13,35;UBERON:0007811,1.78e-12,36;UBERON:0000153,1.18e-11,43;UBERON:0000065,1.24e-10,41;UBERON:0001004,2.56e-10,42;UBERON:0002390,1.86e-09,45;UBERON:0003061,1.86e-09,45;UBERON:0002193,1.05e-08,48;UBERON:0002405,1.05e-08,48;UBERON:0003929,1.55e-08,55;UBERON:0002368,1.36e-07,60;UBERON:0002530,8.53e-07,65|phase1_expression=0,0,0,0,0,0,0,7.23090611272827,114.742808553608,55.4732927383125,14.2110913627169,7.8974437405383,7.53283211697305,5.68232615723483,0,0.202475267389826,0,0.315462165358238,0.137114433605739,0,0.935476191661768,0.496454756004426,0.261199789138935,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,7.88578248471361,58.7543335029189,42.6839124910929,0,0,0,0,0,0,0,0,0,0,0,0.299600110518405,0,2.07379224616955,1.62007125998029,1.05162480675691,0,0,0.734944795289724,0.191690942036473,0.919218786610021,0,0,0.153606533256243,0,0.0914876436024097,0,0,0,0,0,0,0,0.37863096666592,0,0.289864488701678,0,0,0,0,0,0.140444420131752,0.170430322578058,0,0,0,0,0,0,0.216491041011214,0,0,0,0.517875767294343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510914110417183,0.958520996047362,0.599902730993408,0.381210681219194,0,0,0,0,0.255715457330331,0.20778804455956,0,0,0,0,0.210441855886474,0.650602214813519,0.229902104433473,0.180062129805349,0.150704817835715,0.408218994907967,0.2562274405697,0,0,1.07783996466421,0,0.175951124163949,0,0,0.696504333044333,0,0.199034266818493,0.702213187313235,0,0.284163499395593,0.207125772535502,0,0.180062061461015,0.23674473558521,0.196764231747404,0.154267112887378,0,0.268273401399619,0,0,0,0,0,0,0,0.420579897128254,0.102904612379284,0,0.264450566663544,0.213288250535234,0.232236671860439,0.128867461322093,0.201683524623343,0.22237804384487,0.380451252225118,0,0.329397909448022,0,0,0.19496408711912,0,0,0,0,0.342745537829186,0,0.203651327845314,0.193952487167626,0.140271639780637,0,0.295220295959204,0,0,0,0,0,0,0.202860121388503,0,0,0,0,0,1.43768206527355,0,0,0,0,0,0.369506380333209,0.189491411770485,0.162964976442026,0.169745085775188,0,0.167506257441816,0,0,0,0,0,0,0.345369963731791,0.144649058581512,0,0,0,0,0,0,0,0,0,0.390438744296638,0,0.238968797952552,0.222798674082394,0,0,0,0,0.321321316421807,0.141940085208269,0.178065603667255,0.162886959353576,0.329940245945071,0,0.242780636154981,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0.18006109403131,0,0,0,0,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0.164140899745061,0.582961673259701,0,0,0.412773735926445,0,0.188368457004691,0.136694227721025,0,1.35982743995084,1.25956307091292,1.65839968565309,0,0,0,0.216010681643603,0.209088296014469,0.218362563746178,0.404593039154462,0.165306911450672,0,0,0,1.69107881605257,1.04661582230785,1.48912641411388,0.388902376688095,0,0,0.117357238645754,0.13020438484395,0.209718688851422,0.241584120826006,5.47257011889944,0.632022241256357,0.405450430580328,0,0.25984164595559,0,0.79472541912506,0.841368146639782,1.32920574457119,1.21159739937777,1.447929326445,1.20991422164209,2.33898913775406,2.21287235772758,2.33753804363138,0,0.221985953374065,0,0,0.579568782096571,0.187682475451182,0.183151624267265,0,0,0,0,0,0.171853182343688,0,0,0,0,0.453142408984205,0,0.207574695168353,0,0,0.243106717068294,0.209613162627982,0,0.222246727801615,0.206035057238894,0,0.252697211763798,0,0.188626341386076,0.0936415074698824,0,0.114870937911227,0.476293691283074,0,0.192909220463705,0,0,0,0.177475806159338,0.238436189947321,0,0.188218760830661,0.0846146078916765,0,0,0,0,0.237270036248348,0.197008964751127,0.409231043169689,0.154936841185966,0.385813221962283,0,0,0,0.191288332068843,0,0.231867835620421|short_description=p4@Kdm2b}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=30841 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|TSSclassifier=NA | |||
|UniProt=Q6P1G2,D3YUE3 | |||
|association_with_transcript=11bp_to_ENSMUST00000123479,NM_001003953,uc008zms.1,uc008zmu.1,uc008zmv.1_5end | |||
|cluster_id=chr5:123439052..123439089,- | |||
|description=CAGE_peak_4_at_Kdm2b_5end | |||
|id=chr5:123439052..123439089,- | |||
|ontology_enrichment_celltype=CL:0000542!9.25e-11!13;CL:0000051!9.25e-11!13;CL:0000838!1.17e-10!12;CL:0000084!7.87e-10!11;CL:0000827!7.87e-10!11;CL:0000791!4.55e-09!9;CL:0000789!4.55e-09!9;CL:0002420!4.55e-09!9;CL:0002419!4.55e-09!9;CL:0000790!4.55e-09!9;CL:0000624!3.22e-08!8;CL:0000738!5.06e-08!17;CL:0002087!5.06e-08!17;CL:0000988!8.90e-07!32;CL:0002032!8.90e-07!32;CL:0000037!8.90e-07!32;CL:0000566!8.90e-07!32;CL:0000837!8.90e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.30e-29,9;CL:0000789,1.30e-29,9;CL:0002420,1.30e-29,9;CL:0002419,1.30e-29,9;CL:0000790,1.30e-29,9;CL:0000838,6.11e-27,12;CL:0000624,1.98e-26,8;CL:0000542,1.02e-24,13;CL:0000051,1.02e-24,13;CL:0000084,6.20e-24,11;CL:0000827,6.20e-24,11;CL:0000893,3.37e-20,6;CL:0002489,3.37e-20,6;CL:0000898,3.37e-20,6;CL:0000809,3.37e-20,6;CL:0000810,3.37e-20,6;CL:0000895,3.37e-20,6;CL:0000808,3.37e-20,6;CL:0000894,3.37e-20,6;CL:0000806,3.37e-20,6;CL:0000807,3.37e-20,6;CL:0000805,3.37e-20,6;CL:0002425,3.37e-20,6;CL:0002436,3.37e-20,6;CL:0002427,3.37e-20,6;CL:0002428,3.37e-20,6;CL:0002429,3.37e-20,6;CL:0002433,3.37e-20,6;CL:0002431,3.37e-20,6;CL:0002432,3.37e-20,6;CL:0000738,1.90e-18,17;CL:0002087,1.90e-18,17;CL:0002031,6.38e-12,25;CL:0000988,6.83e-09,32;CL:0002032,6.83e-09,32;CL:0000037,6.83e-09,32;CL:0000837,6.83e-09,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!2.92e-09!23;UBERON:0000974!2.92e-09!23;UBERON:0004807!2.92e-09!23;UBERON:0005058!2.92e-09!23;UBERON:0003351!2.92e-09!23;UBERON:0009113!2.92e-09!23;UBERON:0003295!2.92e-09!23;UBERON:0009722!2.92e-09!23;UBERON:0005562!2.92e-09!23;UBERON:0007690!2.92e-09!23;UBERON:0006562!1.52e-08!24;UBERON:0003408!1.52e-08!24;UBERON:0001557!1.52e-08!24;UBERON:0001042!1.52e-08!24;UBERON:0008814!1.52e-08!24;UBERON:0009145!1.52e-08!24;UBERON:0004177!6.59e-08!29;UBERON:0000072!1.48e-07!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,5.07e-21,23;UBERON:0000974,5.07e-21,23;UBERON:0004807,5.07e-21,23;UBERON:0005058,5.07e-21,23;UBERON:0003351,5.07e-21,23;UBERON:0009113,5.07e-21,23;UBERON:0003295,5.07e-21,23;UBERON:0009722,5.07e-21,23;UBERON:0005562,5.07e-21,23;UBERON:0007690,5.07e-21,23;UBERON:0006562,4.91e-20,24;UBERON:0003408,4.91e-20,24;UBERON:0001557,4.91e-20,24;UBERON:0001042,4.91e-20,24;UBERON:0008814,4.91e-20,24;UBERON:0009145,4.91e-20,24;UBERON:0000072,1.63e-17,27;UBERON:0004177,4.00e-16,29;UBERON:0005057,4.00e-16,29;UBERON:0000077,6.61e-13,35;UBERON:0007811,1.78e-12,36;UBERON:0000153,1.18e-11,43;UBERON:0000065,1.24e-10,41;UBERON:0001004,2.56e-10,42;UBERON:0002390,1.86e-09,45;UBERON:0003061,1.86e-09,45;UBERON:0002193,1.05e-08,48;UBERON:0002405,1.05e-08,48;UBERON:0003929,1.55e-08,55;UBERON:0002368,1.36e-07,60;UBERON:0002530,8.53e-07,65 | |||
|phase1_expression=0,0,0,0,0,0,0,7.23090611272827,114.742808553608,55.4732927383125,14.2110913627169,7.8974437405383,7.53283211697305,5.68232615723483,0,0.202475267389826,0,0.315462165358238,0.137114433605739,0,0.935476191661768,0.496454756004426,0.261199789138935,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,7.88578248471361,58.7543335029189,42.6839124910929,0,0,0,0,0,0,0,0,0,0,0,0.299600110518405,0,2.07379224616955,1.62007125998029,1.05162480675691,0,0,0.734944795289724,0.191690942036473,0.919218786610021,0,0,0.153606533256243,0,0.0914876436024097,0,0,0,0,0,0,0,0.37863096666592,0,0.289864488701678,0,0,0,0,0,0.140444420131752,0.170430322578058,0,0,0,0,0,0,0.216491041011214,0,0,0,0.517875767294343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510914110417183,0.958520996047362,0.599902730993408,0.381210681219194,0,0,0,0,0.255715457330331,0.20778804455956,0,0,0,0,0.210441855886474,0.650602214813519,0.229902104433473,0.180062129805349,0.150704817835715,0.408218994907967,0.2562274405697,0,0,1.07783996466421,0,0.175951124163949,0,0,0.696504333044333,0,0.199034266818493,0.702213187313235,0,0.284163499395593,0.207125772535502,0,0.180062061461015,0.23674473558521,0.196764231747404,0.154267112887378,0,0.268273401399619,0,0,0,0,0,0,0,0.420579897128254,0.102904612379284,0,0.264450566663544,0.213288250535234,0.232236671860439,0.128867461322093,0.201683524623343,0.22237804384487,0.380451252225118,0,0.329397909448022,0,0,0.19496408711912,0,0,0,0,0.342745537829186,0,0.203651327845314,0.193952487167626,0.140271639780637,0,0.295220295959204,0,0,0,0,0,0,0.202860121388503,0,0,0,0,0,1.43768206527355,0,0,0,0,0,0.369506380333209,0.189491411770485,0.162964976442026,0.169745085775188,0,0.167506257441816,0,0,0,0,0,0,0.345369963731791,0.144649058581512,0,0,0,0,0,0,0,0,0,0.390438744296638,0,0.238968797952552,0.222798674082394,0,0,0,0,0.321321316421807,0.141940085208269,0.178065603667255,0.162886959353576,0.329940245945071,0,0.242780636154981,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0.18006109403131,0,0,0,0,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0.164140899745061,0.582961673259701,0,0,0.412773735926445,0,0.188368457004691,0.136694227721025,0,1.35982743995084,1.25956307091292,1.65839968565309,0,0,0,0.216010681643603,0.209088296014469,0.218362563746178,0.404593039154462,0.165306911450672,0,0,0,1.69107881605257,1.04661582230785,1.48912641411388,0.388902376688095,0,0,0.117357238645754,0.13020438484395,0.209718688851422,0.241584120826006,5.47257011889944,0.632022241256357,0.405450430580328,0,0.25984164595559,0,0.79472541912506,0.841368146639782,1.32920574457119,1.21159739937777,1.447929326445,1.20991422164209,2.33898913775406,2.21287235772758,2.33753804363138,0,0.221985953374065,0,0,0.579568782096571,0.187682475451182,0.183151624267265,0,0,0,0,0,0.171853182343688,0,0,0,0,0.453142408984205,0,0.207574695168353,0,0,0.243106717068294,0.209613162627982,0,0.222246727801615,0.206035057238894,0,0.252697211763798,0,0.188626341386076,0.0936415074698824,0,0.114870937911227,0.476293691283074,0,0.192909220463705,0,0,0,0.177475806159338,0.238436189947321,0,0.188218760830661,0.0846146078916765,0,0,0,0,0.237270036248348,0.197008964751127,0.409231043169689,0.154936841185966,0.385813221962283,0,0,0,0.191288332068843,0,0.231867835620421 | |||
|short_description=p4@Kdm2b | |||
}} |
Latest revision as of 20:32, 1 October 2015
Short description: | p4@Kdm2b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Kdm2b_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | 11bp_to_ENSMUST00000123479, NM_001003953, uc008zms.1, uc008zmu.1, uc008zmv.1_5end |
EntrezGene: | Kdm2b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 5.07e-21 | 23 |
neck | 5.07e-21 | 23 |
respiratory system epithelium | 5.07e-21 | 23 |
hemolymphoid system gland | 5.07e-21 | 23 |
pharyngeal epithelium | 5.07e-21 | 23 |
thymic region | 5.07e-21 | 23 |
pharyngeal gland | 5.07e-21 | 23 |
entire pharyngeal arch endoderm | 5.07e-21 | 23 |
thymus primordium | 5.07e-21 | 23 |
early pharyngeal endoderm | 5.07e-21 | 23 |
pharynx | 4.91e-20 | 24 |
gland of gut | 4.91e-20 | 24 |
upper respiratory tract | 4.91e-20 | 24 |
chordate pharynx | 4.91e-20 | 24 |
pharyngeal arch system | 4.91e-20 | 24 |
pharyngeal region of foregut | 4.91e-20 | 24 |
segment of respiratory tract | 1.63e-17 | 27 |
hemopoietic organ | 4.00e-16 | 29 |
immune organ | 4.00e-16 | 29 |
mixed endoderm/mesoderm-derived structure | 6.61e-13 | 35 |
craniocervical region | 1.78e-12 | 36 |
anterior region of body | 1.18e-11 | 43 |
respiratory tract | 1.24e-10 | 41 |
respiratory system | 2.56e-10 | 42 |
hematopoietic system | 1.86e-09 | 45 |
blood island | 1.86e-09 | 45 |
hemolymphoid system | 1.05e-08 | 48 |
immune system | 1.05e-08 | 48 |
gut epithelium | 1.55e-08 | 55 |
endocrine gland | 1.36e-07 | 60 |
gland | 8.53e-07 | 65 |