FFCP PHASE1:Mm9::chr12:47920231..47920236,-: Difference between revisions
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{{FFCP|EntrezGene=664883|HGNC=|MCL_coexpression_id=87|UniProt=Q9JKN6|association_with_transcript=-469bp_to_ENSMUST00000021438,NM_021361,uc007nmd.2,uc007nme.2_5end|description=CAGE_peak_8_at_Nova1_5end|id=chr12:47920231..47920236,-|ontology_enrichment_celltype=CL:0000117!1.89e-14!23;CL:0000337!1.89e-14!23;CL:0000540!1.59e-13!33;CL:0000047!1.59e-13!33;CL:0000031!1.59e-13!33;CL:0000404!1.59e-13!33;CL:0002319!5.55e-13!43;CL:0000221!2.32e-12!44;CL:0000133!2.32e-12!44;CL:0000393!1.38e-09!39;CL:0000211!1.38e-09!39;CL:0000055!3.06e-09!50|ontology_enrichment_celltype_v019_2=CL:0000117,2.45e-36,23;CL:0000337,2.45e-36,23;CL:0000540,3.23e-24,33;CL:0000047,3.23e-24,33;CL:0000031,3.23e-24,33;CL:0000404,3.23e-24,33;CL:0002319,6.12e-20,43;CL:0000393,6.31e-20,39;CL:0000211,6.31e-20,39;CL:0000221,2.13e-19,44;CL:0000133,2.13e-19,44;CL:0002321,9.25e-11,70;CL:0000120,1.03e-10,3;CL:0002612,1.96e-10,3;CL:0002614,9.17e-10,3;CL:0002613,1.05e-09,3;CL:0002610,1.94e-09,3;CL:0002611,9.26e-08,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.35e-27!73;UBERON:0005743!4.35e-27!73;UBERON:0000073!1.27e-25!75;UBERON:0001016!1.27e-25!75;UBERON:0004121!6.26e-22!102;UBERON:0000924!6.26e-22!102;UBERON:0006601!6.26e-22!102;UBERON:0001049!1.85e-20!52;UBERON:0005068!1.85e-20!52;UBERON:0006241!1.85e-20!52;UBERON:0007135!1.85e-20!52;UBERON:0002346!1.33e-19!71;UBERON:0003075!1.33e-19!71;UBERON:0007284!1.33e-19!71;UBERON:0000955!1.70e-18!50;UBERON:0006238!1.70e-18!50;UBERON:0002616!7.71e-18!49;UBERON:0000033!8.02e-18!63;UBERON:0002020!1.93e-15!34;UBERON:0003056!2.22e-14!49;UBERON:0003080!2.66e-13!40;UBERON:0002780!1.30e-12!39;UBERON:0001890!1.30e-12!39;UBERON:0006240!1.30e-12!39;UBERON:0002791!1.58e-11!29;UBERON:0003528!1.58e-11!29;UBERON:0001893!1.58e-11!29;UBERON:0007811!2.17e-08!86;UBERON:0003076!2.97e-08!12;UBERON:0003057!2.97e-08!12;UBERON:0000153!7.95e-08!94;UBERON:0002420!2.77e-07!8;UBERON:0007245!2.77e-07!8;UBERON:0010009!2.77e-07!8;UBERON:0010011!2.77e-07!8;UBERON:0000454!2.77e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.99e-30,73;UBERON:0001016,2.62e-29,75;UBERON:0000073,1.23e-27,54;UBERON:0001049,6.88e-24,52;UBERON:0005068,6.88e-24,52;UBERON:0006241,6.88e-24,52;UBERON:0007135,6.88e-24,52;UBERON:0002420,1.69e-22,8;UBERON:0007245,1.69e-22,8;UBERON:0010009,1.69e-22,8;UBERON:0010011,1.69e-22,8;UBERON:0000454,1.69e-22,8;UBERON:0002020,2.57e-22,34;UBERON:0004121,4.71e-22,95;UBERON:0000924,4.71e-22,95;UBERON:0006601,4.71e-22,95;UBERON:0003076,4.20e-20,12;UBERON:0003057,4.20e-20,12;UBERON:0002240,2.53e-19,6;UBERON:0005174,2.53e-19,6;UBERON:0001137,2.53e-19,6;UBERON:0002346,1.46e-18,64;UBERON:0003075,1.46e-18,64;UBERON:0007284,1.46e-18,64;UBERON:0001948,1.49e-16,5;UBERON:0002315,1.49e-16,5;UBERON:0010371,1.03e-15,73;UBERON:0000369,2.47e-14,5;UBERON:0002435,2.47e-14,5;UBERON:0000204,2.47e-14,5;UBERON:0010082,2.47e-14,5;UBERON:0002616,4.43e-13,46;UBERON:0000955,9.88e-13,47;UBERON:0006238,9.88e-13,47;UBERON:0002950,1.92e-12,4;UBERON:0001891,1.92e-12,4;UBERON:0009616,1.92e-12,4;UBERON:0010286,1.92e-12,4;UBERON:0003528,3.35e-12,29;UBERON:0002791,3.35e-12,29;UBERON:0001893,3.35e-12,29;UBERON:0010314,1.57e-11,92;UBERON:0002257,1.96e-10,3;UBERON:0003080,8.25e-10,40;UBERON:0002038,9.17e-10,3;UBERON:0009663,9.17e-10,3;UBERON:0009661,9.17e-10,3;UBERON:0000125,9.17e-10,3;UBERON:0002308,9.17e-10,3;UBERON:0004684,1.94e-09,3;UBERON:0002275,1.94e-09,3;UBERON:0002780,1.73e-08,39;UBERON:0001890,1.73e-08,39;UBERON:0006240,1.73e-08,39;UBERON:0000025,1.98e-08,114;UBERON:0011216,4.67e-08,194;UBERON:0002256,9.26e-08,2;UBERON:0004111,1.40e-07,122;UBERON:0003056,1.51e-07,49;UBERON:0001896,9.50e-07,2;UBERON:0002298,9.50e-07,2;UBERON:0005290,9.50e-07,2;UBERON:0010096,9.50e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.439372365468944,0.194429899074283,0,1.43752564364972,0,0,0,0,0,0,4.04632921719196,2.11596391708813,5.07065122804943,0.338844532069132,0,0,0,0,0.599200221036809,0.384218305321555,0.311068836925433,0.135005938331691,0.210324961351382,4.28476476605705,3.09215957332259,0.61245399607477,0.766763768145891,0,1.10115880999389,2.17068474744819,1.84327839907492,3.03338461779446,1.55528994124096,1.56274011167028,1.95428099300967,2.25105044012672,1.5279824777681,3.53554302568401,2.27794689278565,2.05039390407831,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150722640552623,0.117588707135705,0,0,0.144599356919912,0.884610551949874,0.161766849947409,0.220841518460394,0.484875253135222,0,0.878342391034642,2.09446706813455,0,0,0,0,1.9472783122627,1.37250180845588,1.00523481690292,0.347648640384553,0.511430914660661,0.62336413367868,0.486723789203273,0.611036183101898,0.248813941220186,0,0,0.260240885925407,0.459804208866946,0.720248519221397,0.150704817835715,0.544291993210623,0.384341160854549,0.468508622798644,0,0.215567992932842,0.189106080167819,0,0.219195732427575,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0.308534225774757,0,0,0,0,0,0,0,0,0,0.420579897128254,0.514523061896422,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0.397912944082302,0,0,0,0,0.379335801906163,0.114248512609729,0,0,0,0.140271639780637,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0.169745085775188,0,0.335012514883631,0,0,0.157635144106191,0,0,0.327726629431476,0,0,0,0,0,0,1.9266070798535,1.52375192569864,0,1.51482556322624,0.631016438832513,0.780877488593277,0.215423397732799,0.238968797952552,0.222798674082394,0.283076530788832,0.404810701674894,0,0,0.963963949265421,0.141940085208269,0.534196811001766,0.162886959353576,0.329940245945071,0,0.242780636154981,0,0,0,0,0.258428293168221,0,0,0,0,0,0.340439605753788,0.18006109403131,0,0,0.532020700926821,0.356737635204141,0.164549020602121,0.608929898229199,0,0,0,0.32977250588296,0.322928853391811,0.301564624640779,0.119372344003136,0,0,2.03967832211561,0,0,0,0,0,0.228778173206523,0,0,0,0,0.316335993581135,0.406638934253697,0,0.209088296014469,0,0,0,0,0,0,0,0,0,0.583353565032143,0.258319646955462,0.168956125490778,0.469428954583016,0.39061315453185,0.209718688851422,0.241584120826006,0.288030006257865,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0,0.226730383615211,0,0.0897138566094757,0,0,0.187682475451182,0.36630324853453,0,0,1.12950368523413,0.460325236507177,0.572895513439397,0.859265911718438,0,1.5107877947794,2.02506750069542,0,1.81256963593682,0.51776031175182,0.207574695168353,0.798049746802062,0.853668028770671,0.486213434136588,0.628839487883947,0.367687016900028,0.44449345560323,0,0.64183841918363,0.758091635291392,0.50695859978048,0.377252682772152,0.468207537349412,0.576226371643824,0.402048282689293,0,0.579421629724277,0.578727661391115,0.412085900803307,0.441596760403192,0,0.177475806159338,0.476872379894642,0.290692833264657,0.188218760830661,0.338458431566706,0.365855945745545,0.263069711437843,0.135804113845862,0,0.118635018124174,0.394017929502254,0.409231043169689,0.154936841185966,0.771626443924566,0,0,0.214871054048298,0.191288332068843,0.441182838239031,0.695603506861264|short_description=p8@Nova1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=664883 | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|TSSclassifier=NA | |||
|UniProt=Q9JKN6 | |||
|association_with_transcript=-469bp_to_ENSMUST00000021438,NM_021361,uc007nmd.2,uc007nme.2_5end | |||
|cluster_id=chr12:47920231..47920236,- | |||
|description=CAGE_peak_8_at_Nova1_5end | |||
|id=chr12:47920231..47920236,- | |||
|ontology_enrichment_celltype=CL:0000117!1.89e-14!23;CL:0000337!1.89e-14!23;CL:0000540!1.59e-13!33;CL:0000047!1.59e-13!33;CL:0000031!1.59e-13!33;CL:0000404!1.59e-13!33;CL:0002319!5.55e-13!43;CL:0000221!2.32e-12!44;CL:0000133!2.32e-12!44;CL:0000393!1.38e-09!39;CL:0000211!1.38e-09!39;CL:0000055!3.06e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.45e-36,23;CL:0000337,2.45e-36,23;CL:0000540,3.23e-24,33;CL:0000047,3.23e-24,33;CL:0000031,3.23e-24,33;CL:0000404,3.23e-24,33;CL:0002319,6.12e-20,43;CL:0000393,6.31e-20,39;CL:0000211,6.31e-20,39;CL:0000221,2.13e-19,44;CL:0000133,2.13e-19,44;CL:0002321,9.25e-11,70;CL:0000120,1.03e-10,3;CL:0002612,1.96e-10,3;CL:0002614,9.17e-10,3;CL:0002613,1.05e-09,3;CL:0002610,1.94e-09,3;CL:0002611,9.26e-08,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.35e-27!73;UBERON:0005743!4.35e-27!73;UBERON:0000073!1.27e-25!75;UBERON:0001016!1.27e-25!75;UBERON:0004121!6.26e-22!102;UBERON:0000924!6.26e-22!102;UBERON:0006601!6.26e-22!102;UBERON:0001049!1.85e-20!52;UBERON:0005068!1.85e-20!52;UBERON:0006241!1.85e-20!52;UBERON:0007135!1.85e-20!52;UBERON:0002346!1.33e-19!71;UBERON:0003075!1.33e-19!71;UBERON:0007284!1.33e-19!71;UBERON:0000955!1.70e-18!50;UBERON:0006238!1.70e-18!50;UBERON:0002616!7.71e-18!49;UBERON:0000033!8.02e-18!63;UBERON:0002020!1.93e-15!34;UBERON:0003056!2.22e-14!49;UBERON:0003080!2.66e-13!40;UBERON:0002780!1.30e-12!39;UBERON:0001890!1.30e-12!39;UBERON:0006240!1.30e-12!39;UBERON:0002791!1.58e-11!29;UBERON:0003528!1.58e-11!29;UBERON:0001893!1.58e-11!29;UBERON:0007811!2.17e-08!86;UBERON:0003076!2.97e-08!12;UBERON:0003057!2.97e-08!12;UBERON:0000153!7.95e-08!94;UBERON:0002420!2.77e-07!8;UBERON:0007245!2.77e-07!8;UBERON:0010009!2.77e-07!8;UBERON:0010011!2.77e-07!8;UBERON:0000454!2.77e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.99e-30,73;UBERON:0001016,2.62e-29,75;UBERON:0000073,1.23e-27,54;UBERON:0001049,6.88e-24,52;UBERON:0005068,6.88e-24,52;UBERON:0006241,6.88e-24,52;UBERON:0007135,6.88e-24,52;UBERON:0002420,1.69e-22,8;UBERON:0007245,1.69e-22,8;UBERON:0010009,1.69e-22,8;UBERON:0010011,1.69e-22,8;UBERON:0000454,1.69e-22,8;UBERON:0002020,2.57e-22,34;UBERON:0004121,4.71e-22,95;UBERON:0000924,4.71e-22,95;UBERON:0006601,4.71e-22,95;UBERON:0003076,4.20e-20,12;UBERON:0003057,4.20e-20,12;UBERON:0002240,2.53e-19,6;UBERON:0005174,2.53e-19,6;UBERON:0001137,2.53e-19,6;UBERON:0002346,1.46e-18,64;UBERON:0003075,1.46e-18,64;UBERON:0007284,1.46e-18,64;UBERON:0001948,1.49e-16,5;UBERON:0002315,1.49e-16,5;UBERON:0010371,1.03e-15,73;UBERON:0000369,2.47e-14,5;UBERON:0002435,2.47e-14,5;UBERON:0000204,2.47e-14,5;UBERON:0010082,2.47e-14,5;UBERON:0002616,4.43e-13,46;UBERON:0000955,9.88e-13,47;UBERON:0006238,9.88e-13,47;UBERON:0002950,1.92e-12,4;UBERON:0001891,1.92e-12,4;UBERON:0009616,1.92e-12,4;UBERON:0010286,1.92e-12,4;UBERON:0003528,3.35e-12,29;UBERON:0002791,3.35e-12,29;UBERON:0001893,3.35e-12,29;UBERON:0010314,1.57e-11,92;UBERON:0002257,1.96e-10,3;UBERON:0003080,8.25e-10,40;UBERON:0002038,9.17e-10,3;UBERON:0009663,9.17e-10,3;UBERON:0009661,9.17e-10,3;UBERON:0000125,9.17e-10,3;UBERON:0002308,9.17e-10,3;UBERON:0004684,1.94e-09,3;UBERON:0002275,1.94e-09,3;UBERON:0002780,1.73e-08,39;UBERON:0001890,1.73e-08,39;UBERON:0006240,1.73e-08,39;UBERON:0000025,1.98e-08,114;UBERON:0011216,4.67e-08,194;UBERON:0002256,9.26e-08,2;UBERON:0004111,1.40e-07,122;UBERON:0003056,1.51e-07,49;UBERON:0001896,9.50e-07,2;UBERON:0002298,9.50e-07,2;UBERON:0005290,9.50e-07,2;UBERON:0010096,9.50e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0.439372365468944,0.194429899074283,0,1.43752564364972,0,0,0,0,0,0,4.04632921719196,2.11596391708813,5.07065122804943,0.338844532069132,0,0,0,0,0.599200221036809,0.384218305321555,0.311068836925433,0.135005938331691,0.210324961351382,4.28476476605705,3.09215957332259,0.61245399607477,0.766763768145891,0,1.10115880999389,2.17068474744819,1.84327839907492,3.03338461779446,1.55528994124096,1.56274011167028,1.95428099300967,2.25105044012672,1.5279824777681,3.53554302568401,2.27794689278565,2.05039390407831,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150722640552623,0.117588707135705,0,0,0.144599356919912,0.884610551949874,0.161766849947409,0.220841518460394,0.484875253135222,0,0.878342391034642,2.09446706813455,0,0,0,0,1.9472783122627,1.37250180845588,1.00523481690292,0.347648640384553,0.511430914660661,0.62336413367868,0.486723789203273,0.611036183101898,0.248813941220186,0,0,0.260240885925407,0.459804208866946,0.720248519221397,0.150704817835715,0.544291993210623,0.384341160854549,0.468508622798644,0,0.215567992932842,0.189106080167819,0,0.219195732427575,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0.308534225774757,0,0,0,0,0,0,0,0,0,0.420579897128254,0.514523061896422,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0.397912944082302,0,0,0,0,0.379335801906163,0.114248512609729,0,0,0,0.140271639780637,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0.169745085775188,0,0.335012514883631,0,0,0.157635144106191,0,0,0.327726629431476,0,0,0,0,0,0,1.9266070798535,1.52375192569864,0,1.51482556322624,0.631016438832513,0.780877488593277,0.215423397732799,0.238968797952552,0.222798674082394,0.283076530788832,0.404810701674894,0,0,0.963963949265421,0.141940085208269,0.534196811001766,0.162886959353576,0.329940245945071,0,0.242780636154981,0,0,0,0,0.258428293168221,0,0,0,0,0,0.340439605753788,0.18006109403131,0,0,0.532020700926821,0.356737635204141,0.164549020602121,0.608929898229199,0,0,0,0.32977250588296,0.322928853391811,0.301564624640779,0.119372344003136,0,0,2.03967832211561,0,0,0,0,0,0.228778173206523,0,0,0,0,0.316335993581135,0.406638934253697,0,0.209088296014469,0,0,0,0,0,0,0,0,0,0.583353565032143,0.258319646955462,0.168956125490778,0.469428954583016,0.39061315453185,0.209718688851422,0.241584120826006,0.288030006257865,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0,0.226730383615211,0,0.0897138566094757,0,0,0.187682475451182,0.36630324853453,0,0,1.12950368523413,0.460325236507177,0.572895513439397,0.859265911718438,0,1.5107877947794,2.02506750069542,0,1.81256963593682,0.51776031175182,0.207574695168353,0.798049746802062,0.853668028770671,0.486213434136588,0.628839487883947,0.367687016900028,0.44449345560323,0,0.64183841918363,0.758091635291392,0.50695859978048,0.377252682772152,0.468207537349412,0.576226371643824,0.402048282689293,0,0.579421629724277,0.578727661391115,0.412085900803307,0.441596760403192,0,0.177475806159338,0.476872379894642,0.290692833264657,0.188218760830661,0.338458431566706,0.365855945745545,0.263069711437843,0.135804113845862,0,0.118635018124174,0.394017929502254,0.409231043169689,0.154936841185966,0.771626443924566,0,0,0.214871054048298,0.191288332068843,0.441182838239031,0.695603506861264 | |||
|short_description=p8@Nova1 | |||
}} |
Latest revision as of 15:26, 26 September 2015
Short description: | p8@Nova1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Nova1_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | -469bp_to_ENSMUST00000021438, NM_021361, uc007nmd.2, uc007nme.2_5end |
EntrezGene: | Nova1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.45e-36 | 23 |
neuroblast (sensu Vertebrata) | 2.45e-36 | 23 |
neuron | 3.23e-24 | 33 |
neuronal stem cell | 3.23e-24 | 33 |
neuroblast | 3.23e-24 | 33 |
electrically signaling cell | 3.23e-24 | 33 |
neural cell | 6.12e-20 | 43 |
electrically responsive cell | 6.31e-20 | 39 |
electrically active cell | 6.31e-20 | 39 |
ectodermal cell | 2.13e-19 | 44 |
neurectodermal cell | 2.13e-19 | 44 |
embryonic cell | 9.25e-11 | 70 |
granule cell | 1.03e-10 | 3 |
neuron of the ventral spinal cord | 1.96e-10 | 3 |
neuron of the substantia nigra | 9.17e-10 | 3 |
striatum neuron | 1.05e-09 | 3 |
raphe nuclei neuron | 1.94e-09 | 3 |
neuron of the dorsal spinal cord | 9.26e-08 | 2 |