FFCP PHASE1:Hg19::chr2:149895062..149895085,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=130576 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27018 | |||
|TSSclassifier=strong | |||
|UniProt=Q8NI32 | |||
|association_with_transcript=81bp_to_ENST00000409642,NM_177964,uc002twv.1,uc002tww.1_5end | |||
|cluster_id=chr2:149895062..149895085,+ | |||
|coexpression_cluster_id=C2660 | |||
|description=CAGE_peak_4_at_LYPD6B_5end | |||
|id=chr2:149895062..149895085,+ | |||
|ontology_enrichment_celltype=CL:0002620!6.17e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000197;6.06e-15;6!CL:0000098;6.06e-15;6!CL:0002167;6.06e-15;6!CL:0002620;2.53e-13;23!CL:0000710;4.84e-09;20!CL:0000075;9.43e-09;27!CL:0002586;3.30e-08;3!CL:0000064;1.41e-07;3!CL:0000067;1.41e-07;3!CL:0005012;1.41e-07;3!CL:0002304;1.41e-07;3!CL:0000222;5.89e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000197,6.18e-15,6;CL:0000098,6.18e-15,6;CL:0002167,6.18e-15,6;CL:0002620,2.55e-13,23;CL:0000710,3.86e-09,20;CL:0000075,7.59e-09,27;CL:0002586,3.19e-08,3;CL:0000064,8.19e-08,3;CL:0000067,8.19e-08,3;CL:0005012,8.19e-08,3;CL:0002304,8.19e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3451;2.11e-11;2!DOID:4159;2.11e-11;2!DOID:0060122;2.11e-11;2!DOID:17;4.73e-10;5!DOID:450;4.73e-10;5!DOID:66;4.73e-10;5!DOID:423;4.73e-10;5!DOID:0080000;4.73e-10;5!DOID:11722;4.73e-10;5!DOID:2513;9.15e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3451,3.46e-11,2;DOID:4159,3.46e-11,2;DOID:0060122,3.46e-11,2;DOID:17,5.28e-10,5;DOID:450,5.28e-10,5;DOID:66,5.28e-10,5;DOID:423,5.28e-10,5;DOID:0080000,5.28e-10,5;DOID:11722,5.28e-10,5;DOID:2513,9.67e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0003056!7.16e-10!61;UBERON:0007625!1.91e-08!11;UBERON:0000019!7.21e-08!19;UBERON:0000047!7.21e-08!19;UBERON:0004088!7.21e-08!19;UBERON:0003072!7.21e-08!19;UBERON:0003071!7.21e-08!19;UBERON:0004128!7.21e-08!19;UBERON:0000970!2.79e-07!20;UBERON:0000956!5.48e-07!25;UBERON:0000203!5.48e-07!25;UBERON:0002203!6.33e-07!6;UBERON:0001768!6.33e-07!6;UBERON:0000020!8.93e-07!23;UBERON:0002104!9.38e-07!21;UBERON:0001456!9.38e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;2.04e-16;11!UBERON:0000488;8.53e-12;4!UBERON:0000019;2.90e-09;19!UBERON:0000047;2.90e-09;19!UBERON:0004088;2.90e-09;19!UBERON:0010230;2.90e-09;19!UBERON:0000970;9.03e-09;20!UBERON:0002104;2.52e-08;21!UBERON:0001456;2.52e-08;21!UBERON:0001781;3.30e-08;3!UBERON:0001782;3.30e-08;3!UBERON:0002097;3.86e-08;41!UBERON:0002203;5.04e-08;6!UBERON:0001768;5.04e-08;6!UBERON:0002200;5.04e-08;6!UBERON:0001778;1.41e-07;3!UBERON:0001775;1.41e-07;3!UBERON:0000020;1.50e-07;23!UBERON:0002199;2.81e-07;46!UBERON:0002416;2.81e-07;46!UBERON:0001032;3.28e-07;24!UBERON:0004456;3.28e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.04e-16,11;UBERON:0000488,3.76e-12,4;UBERON:0002097,8.12e-11,41;UBERON:0002199,1.91e-09,46;UBERON:0002416,1.91e-09,46;UBERON:0000019,6.34e-09,20;UBERON:0000047,6.34e-09,20;UBERON:0010312,6.34e-09,20;UBERON:0004088,6.34e-09,20;UBERON:0010230,6.34e-09,20;UBERON:0003072,6.34e-09,20;UBERON:0004128,6.34e-09,20;UBERON:0003071,6.34e-09,20;UBERON:0000970,1.80e-08,21;UBERON:0002104,1.80e-08,21;UBERON:0002203,2.95e-08,6;UBERON:0001768,2.95e-08,6;UBERON:0002200,2.95e-08,6;UBERON:0001782,3.19e-08,3;UBERON:0005424,3.19e-08,3;UBERON:0001456,4.66e-08,22;UBERON:0001778,8.19e-08,3;UBERON:0001775,8.19e-08,3;UBERON:0000020,2.46e-07,24;UBERON:0001032,2.46e-07,24;UBERON:0004456,2.46e-07,24 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,2.00146596706261,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.434539556882471,0,0,0.283604451492204,1.99556457716308,1.93236528524877,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.70296429550139,0,0,0,0.117434498643765,0,0,0,0,0,0,0.741800787835671,0.910161361938026,0,0,0,0,0.438977620880838,0.919463387397059,0.45071417671979,0,2.33206526395521,9.39652510801697,1.27159140695737,0.300091096084402,0.206105058476878,2.06112432036503,4.28068769562657,0,0.292311015483596,0.504867548488229,1.84099797284599,0.484938170456436,1.42003837006646,4.13083602733325,0,0,0,0,0.853815942907168,0.265059536642971,0.813357600086629,0.10366105501537,0.252320850875628,0,0,0,0,0.464367928031979,0,0,0,0,0,0.217879444092406,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.122988438543114,1.88724591328378,0.219500570817251,0,0.201057944823262,0,0,0,0,0.811512834825538,2.46558257895225,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,1.73737568001095,0.61642896765115,0.358121926479791,0,0,0,0,0,0,0,0.670065061337395,0,0,0,0,0,0,0,3.32753378449291,10.5273103390325,24.6015767452938,5.15422225967938,0.601892199455438,0,0,0,0.184369168541703,0.0868836144680828,0,0.686286847621712,0,0,0,0,0,0.604780586659361,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0.483437798366489,0.200506470303285,0,0.459257792658427,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0.769350375349168,6.88830755969382,3.57916234130733,0,0.27470839445503,0.495056999523528,0,0,0,0.386682873168488,0,0.15350367472613,0,0,0,0,0.0890320356467374,0.330569830721956,0,0,0.10115778085555,0.464845549297286,0,0.6970372701606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235624804691373,0,0,0,0,0,0,0,0.282810863907425,0,0,0,0,0,0,0.202910376962704,0,0,0.143411352204052,0.982490410131212,0,0,0,0,0.379473173765715,0.349934720244983,0,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.747768497892312,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0.242721043499027,0,0,0.23874448473769,0.296964680832639,0.307160702099232,0.994147647766298,0,0,0,0,0,0,0,0,0.123084805461069,4.0435146396035,0.179736702294654,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,1.30213880542617,0.174919999992391,0,0,0,1.18193840883968,0,0,0,0,0,0,0,0,0.438770794307945,0,0.139423744278603,0.153900517007594,1.25336261431701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0.216388639742091,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,1.20990716048664,0.30607276163049,0,0.60129367765797,0.103688191397247,0.664653872707185,0,0,0,0,0,0.347119476670262,0.391969589657511,0.0870592065804026,0,0,0,0,0,0.0969890164884194,0,0,0.548167698587004,0,0.189932387867636,0,0,0.426905989478705,0.19980960958213,0.432271251462318,0,0,0,2.36079817574322,0,0,0,5.50790375236138,0,0,0,0,3.0083580899397,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78741985211799,0,0,0.544813624446302,0.321506296930038,0.137539436597234,0.415440338029185,0,0,0.364497339948148,1.0063040627978,0.157611414598396,0.314727528809989,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0.340776043570843,1.69968137280189,0,0,0,0,0,0,0,0.471612915298998,0,0,0,0,0,0.544017803369474,0,0,0,0.157054096250234,0,0,0,0,0,0.0620964029413835,0.138348634936231,0.74988244777264,0,0,0.705797459094515,0,0,0,0,0,0.189403005275089,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,8.40058305792623,0,0,11.3566408405786,0,0,2.08795433572169,2.94717703165954,0.463044948647668,0.244736704506468,0.179088841081487,0.617602894321944,0,0.353378291891762,0,0,0,0.690860683462397,1.51929978088691,0.276516872303462,0,0,0,0.327609848846413,0.245772908753719,0,0,0,0,0,0,0,0,0.127894371303652,0,0.314531883711793,0.218419276384028,0,0,0,0,0,0,0,0,0.918736432059601,0.128458450192919,0,0,0.41023272848151,0.756215088665154,0.138314504928436,0,0,0,0.707818340086442,0,0.231051332300676,0,0,0.795664888465099,0.0752103283492573,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.253663240775627,0.546974809018219,0,0,0,0.127762427639595,0.535701835878287,0,0,0,0,0,0,0,0.131545547125698,0,0,0.156986185701028,0,1.40136081656895,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0.475680363110274,0,0,0,0.0771741581079447,0,0,0,0.471353094203252,0.196308467114945,0,0,1.0195626881269,0,0.257831551894309,0,0.535661815816973,0,0,0,0,0,0,0.339957450954573,0,0,0,0,0,0.252332849670158,0,0,0.101988829741982,0,0.0918948995348449,0,0.303114792872958,0.535928260312357,0,0,0,0,0,0,0.112131862580613,0,0,0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| |||
|short_description=p4@LYPD6B | |||
}} |
Latest revision as of 10:38, 17 September 2015
Short description: | p4@LYPD6B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LYPD6B_5end |
Coexpression cluster: | C2660_Olfactory_mesodermal_mesenchymal_Retinal_glioblastoma_Fibroblast_basal |
Association with transcript: | 81bp_to_ENST00000409642, NM_177964, uc002twv.1, uc002tww.1_5end |
EntrezGene: | LYPD6B |
HGNC: | 27018 |
UniProt: | Q8NI32 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
receptor cell | 6.18e-15 | 6 |
sensory epithelial cell | 6.18e-15 | 6 |
olfactory epithelial cell | 6.18e-15 | 6 |
skin fibroblast | 2.55e-13 | 23 |
neurecto-epithelial cell | 3.86e-09 | 20 |
columnar/cuboidal epithelial cell | 7.59e-09 | 27 |
retinal pigment epithelial cell | 3.19e-08 | 3 |
ciliated cell | 8.19e-08 | 3 |
ciliated epithelial cell | 8.19e-08 | 3 |
multi-ciliated epithelial cell | 8.19e-08 | 3 |
non-pigmented ciliary epithelial cell | 8.19e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 1.04e-16 | 11 |
atypical epithelium | 3.76e-12 | 4 |
skin of body | 8.12e-11 | 41 |
integument | 1.91e-09 | 46 |
integumental system | 1.91e-09 | 46 |
camera-type eye | 6.34e-09 | 20 |
simple eye | 6.34e-09 | 20 |
immature eye | 6.34e-09 | 20 |
ocular region | 6.34e-09 | 20 |
eyeball of camera-type eye | 6.34e-09 | 20 |
optic cup | 6.34e-09 | 20 |
optic vesicle | 6.34e-09 | 20 |
eye primordium | 6.34e-09 | 20 |
eye | 1.80e-08 | 21 |
visual system | 1.80e-08 | 21 |
vasculature of eye | 2.95e-08 | 6 |
uvea | 2.95e-08 | 6 |
vasculature of head | 2.95e-08 | 6 |
pigmented layer of retina | 3.19e-08 | 3 |
presumptive retinal pigmented epithelium | 3.19e-08 | 3 |
face | 4.66e-08 | 22 |
ciliary epithelium | 8.19e-08 | 3 |
ciliary body | 8.19e-08 | 3 |
sense organ | 2.46e-07 | 24 |
sensory system | 2.46e-07 | 24 |
entire sense organ system | 2.46e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
skin carcinoma | 3.46e-11 | 2 |
skin cancer | 3.46e-11 | 2 |
integumentary system cancer | 3.46e-11 | 2 |
musculoskeletal system disease | 5.28e-10 | 5 |
myotonic disease | 5.28e-10 | 5 |
muscle tissue disease | 5.28e-10 | 5 |
myopathy | 5.28e-10 | 5 |
muscular disease | 5.28e-10 | 5 |
myotonic dystrophy | 5.28e-10 | 5 |
basal cell carcinoma | 9.67e-07 | 1 |