FFCP PHASE1:Hg19::chr1:78695298..78695311,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000413519_5end | |||
|cluster_id=chr1:78695298..78695311,+ | |||
|description=CAGE_peak_1_at_ENST00000413519_5end | |||
|id=chr1:78695298..78695311,+ | |||
|ontology_enrichment_celltype=CL:0000188!3.89e-14!9;CL:0002564!2.67e-09!3;CL:0000594!6.99e-09!3;CL:0002602!6.29e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002602;2.79e-23;2!CL:0000188;5.37e-20;9!CL:0000594;4.13e-16;3!CL:0002564;5.59e-16;3!CL:0000680;3.97e-15;7!CL:0002540;2.66e-08;6!CL:0002598;9.53e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002602,1.78e-23,2;CL:0000188,5.51e-20,9;CL:0000594,4.30e-16,3;CL:0002564,4.99e-16,3;CL:0002540,2.52e-08,6;CL:0002598,8.06e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002242!2.67e-09!3;UBERON:0003068!2.67e-09!3;UBERON:0002328!2.67e-09!3;UBERON:0004880!2.67e-09!3;UBERON:0009568!6.29e-07!2;UBERON:0002216!6.29e-07!2;UBERON:0002209!6.29e-07!2;UBERON:0002213!6.29e-07!2;UBERON:0004267!6.29e-07!2;UBERON:0006444!6.29e-07!2;UBERON:0001995!6.29e-07!2;UBERON:0004715!6.29e-07!2;UBERON:0001468!6.29e-07!2;UBERON:0001130!6.29e-07!2;UBERON:0001066!6.29e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;5.37e-36;5!UBERON:0002216;5.37e-36;5!UBERON:0011134;5.37e-36;5!UBERON:0002209;5.37e-36;5!UBERON:0002213;5.37e-36;5!UBERON:0007844;5.37e-36;5!UBERON:0011138;5.37e-36;5!UBERON:0001130;5.37e-36;5!UBERON:0001066;5.37e-36;5!UBERON:0001468;5.37e-36;5!UBERON:0006444;2.79e-23;2!UBERON:0001995;2.79e-23;2!UBERON:0004715;2.79e-23;2!UBERON:0004905;1.20e-22;8!UBERON:0000982;1.20e-22;8!UBERON:0004770;1.20e-22;8!UBERON:0001134;2.59e-17;16!UBERON:0002036;2.59e-17;16!UBERON:0002242;5.59e-16;3!UBERON:0002418;7.26e-16;3!UBERON:0004755;7.26e-16;3!UBERON:0004765;4.55e-15;26!UBERON:0002171;8.84e-13;1!UBERON:0006518;8.84e-13;1!UBERON:0008949;8.84e-13;1!UBERON:0000101;8.84e-13;1!UBERON:0002167;8.84e-13;1!UBERON:0000075;1.84e-11;16!UBERON:0002204;1.16e-10;70!UBERON:0002385;6.73e-09;31!UBERON:0001015;6.73e-09;31!UBERON:0000383;6.73e-09;31!UBERON:0001434;1.63e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,3.28e-36,5;UBERON:0002216,3.28e-36,5;UBERON:0011134,3.28e-36,5;UBERON:0002209,3.28e-36,5;UBERON:0002213,3.28e-36,5;UBERON:0005856,3.28e-36,5;UBERON:0005866,3.28e-36,5;UBERON:0005863,3.28e-36,5;UBERON:0007844,3.28e-36,5;UBERON:0011138,3.28e-36,5;UBERON:0001130,3.28e-36,5;UBERON:0001066,3.28e-36,5;UBERON:0001468,3.28e-36,5;UBERON:0006444,1.78e-23,2;UBERON:0001995,1.78e-23,2;UBERON:0004715,1.78e-23,2;UBERON:0004905,8.87e-23,8;UBERON:0000982,8.87e-23,8;UBERON:0004770,8.87e-23,8;UBERON:0002242,4.99e-16,3;UBERON:0003068,4.99e-16,3;UBERON:0002328,4.99e-16,3;UBERON:0004880,4.99e-16,3;UBERON:0002418,5.38e-16,3;UBERON:0004755,5.38e-16,3;UBERON:0002171,8.85e-13,1;UBERON:0006518,8.85e-13,1;UBERON:0008949,8.85e-13,1;UBERON:0000101,8.85e-13,1;UBERON:0002167,8.85e-13,1;UBERON:0000075,1.58e-11,16;UBERON:0002204,7.81e-08,167 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,8.66364470720326,1.98838425436749,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,1.30361867064741,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0.413303124703062,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0,0,0,0,0.103052529238439,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0.257207374262142,0,0,0.142977993658148,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,2.05476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94459580125936,3.50119364741774,0.542530047399471,0.415941723061614,0.178428988797162,0,0,1.20378439891088,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.290012154876366,1.54048617114644,1.22802939780904,0,9.56040179327635,2.17525040871343,0.170453254832202,0.712256285173899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71175595213568,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,1.12972560932135,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.290967049465258,0,0,0,0,0,0.195551382734803,0,0.213452994739353,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709251365692784,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,1.28144895081234,4.24451623769098,6.21358583020793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0.554805861502613,1.51522404220071,2.51567901752575,0,0,0,0.466311601748341,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705351887381368,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0.333694205676207,0.313972371402056,0,0,0,0,0,0,0,0,0,0,0.828864656652147,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0.924351257262837,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.143444410785353,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p1@ENST00000413519 | |||
}} |
Latest revision as of 10:31, 28 July 2015
Short description: | p1@ENST00000413519 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000413519_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000413519_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
annulus pulposus cell | 1.78e-23 | 2 |
cell of skeletal muscle | 5.51e-20 | 9 |
skeletal muscle satellite cell | 4.30e-16 | 3 |
nucleus pulposus cell of intervertebral disc | 4.99e-16 | 3 |
mesenchymal stem cell of the bone marrow | 2.52e-08 | 6 |
bronchial smooth muscle cell | 8.06e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 3.28e-36 | 5 |
symphysis | 3.28e-36 | 5 |
nonsynovial joint | 3.28e-36 | 5 |
fibrous joint | 3.28e-36 | 5 |
cartilaginous joint | 3.28e-36 | 5 |
developing mesenchymal condensation | 3.28e-36 | 5 |
pre-cartilage condensation | 3.28e-36 | 5 |
cartilaginous condensation | 3.28e-36 | 5 |
cartilage element | 3.28e-36 | 5 |
post-cranial axial skeletal system | 3.28e-36 | 5 |
vertebral column | 3.28e-36 | 5 |
intervertebral disk | 3.28e-36 | 5 |
intervertebral joint | 3.28e-36 | 5 |
annulus fibrosus | 1.78e-23 | 2 |
fibrocartilage | 1.78e-23 | 2 |
annulus fibrosus disci intervertebralis | 1.78e-23 | 2 |
articulation | 8.87e-23 | 8 |
skeletal joint | 8.87e-23 | 8 |
articular system | 8.87e-23 | 8 |
nucleus pulposus | 4.99e-16 | 3 |
axial mesoderm | 4.99e-16 | 3 |
notochord | 4.99e-16 | 3 |
chordamesoderm | 4.99e-16 | 3 |
cartilage tissue | 5.38e-16 | 3 |
skeletal tissue | 5.38e-16 | 3 |
lower lobe of right lung | 8.85e-13 | 1 |
right lung lobe | 8.85e-13 | 1 |
lower lobe of lung | 8.85e-13 | 1 |
lobe of lung | 8.85e-13 | 1 |
right lung | 8.85e-13 | 1 |
subdivision of skeletal system | 1.58e-11 | 16 |
musculoskeletal system | 7.81e-08 | 167 |