FFCP PHASE1:Hg19::chr18:56940611..56940660,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=30062 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18662 | |||
|TSSclassifier=strong | |||
|UniProt=Q86V11,Q9Y2V3 | |||
|association_with_transcript=0bp_to_ENST00000256852,ENST00000334889,NM_013435,uc002lhx.2,uc010dpp.2_5end | |||
|cluster_id=chr18:56940611..56940660,- | |||
|description=CAGE_peak_1_at_RAX_5end | |||
|id=chr18:56940611..56940660,- | |||
|ontology_enrichment_celltype=CL:0002322!1.78e-14!5;CL:0002586!1.26e-09!3;CL:0000064!1.49e-09!3;CL:0005012!1.49e-09!3;CL:0000067!1.49e-09!3;CL:0002304!1.49e-09!3;CL:0000147!2.02e-09!14;CL:0000149!2.73e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.31e-28;5!CL:0000147;8.34e-20;14!CL:0002586;2.10e-18;3!CL:0000064;2.81e-18;3!CL:0000067;2.81e-18;3!CL:0005012;2.81e-18;3!CL:0002304;2.81e-18;3!CL:0002321;6.17e-18;15!CL:0000149;6.12e-14;4!CL:0000075;1.19e-12;27!CL:0000710;5.21e-10;20!CL:0000342;1.98e-07;1!CL:0002565;1.98e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.31e-28,5;CL:0000147,8.11e-20,14;CL:0002586,1.98e-18,3;CL:0000064,2.81e-18,3;CL:0000067,2.81e-18,3;CL:0005012,2.81e-18,3;CL:0002304,2.81e-18,3;CL:0000149,5.86e-14,4;CL:0000075,1.17e-12,27;CL:0000710,5.21e-10,20;CL:0000133,9.72e-08,59;CL:0000342,1.98e-07,1;CL:0002565,1.98e-07,1;CL:0000306,9.76e-07,4;CL:0002222,9.76e-07,4;CL:0002224,9.76e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;3.69e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:225;4.84e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:225,5.14e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007625!2.31e-20!11;UBERON:0003056!5.86e-19!61;UBERON:0000970!6.98e-19!20;UBERON:0002346!2.02e-18!90;UBERON:0003075!4.57e-18!86;UBERON:0007284!4.57e-18!86;UBERON:0002104!7.82e-18!21;UBERON:0000019!1.15e-16!19;UBERON:0000047!1.15e-16!19;UBERON:0004088!1.15e-16!19;UBERON:0003072!1.15e-16!19;UBERON:0003071!1.15e-16!19;UBERON:0004128!1.15e-16!19;UBERON:0000020!5.20e-16!23;UBERON:0001032!3.26e-15!24;UBERON:0004456!3.26e-15!24;UBERON:0000966!4.10e-15!5;UBERON:0005388!4.10e-15!5;UBERON:0001802!4.10e-15!5;UBERON:0000073!4.67e-15!94;UBERON:0001016!4.67e-15!94;UBERON:0001456!8.11e-15!21;UBERON:0005743!1.87e-14!86;UBERON:0000488!2.86e-12!4;UBERON:0003296!2.06e-11!4;UBERON:0010133!2.06e-11!4;UBERON:0000033!3.56e-11!123;UBERON:0000924!4.18e-11!173;UBERON:0006601!4.18e-11!173;UBERON:0004121!1.09e-10!169;UBERON:0000153!2.54e-10!129;UBERON:0007811!2.54e-10!129;UBERON:0001017!3.98e-10!82;UBERON:0005085!5.43e-10!29;UBERON:0001781!1.26e-09!3;UBERON:0001782!1.26e-09!3;UBERON:0005424!1.26e-09!3;UBERON:0001049!1.40e-09!57;UBERON:0005068!1.40e-09!57;UBERON:0006241!1.40e-09!57;UBERON:0007135!1.40e-09!57;UBERON:0001778!1.49e-09!3;UBERON:0001775!1.49e-09!3;UBERON:0001894!1.98e-09!7;UBERON:0006222!1.98e-09!7;UBERON:0000955!3.72e-08!69;UBERON:0006238!3.72e-08!69;UBERON:0002203!3.82e-08!6;UBERON:0001768!3.82e-08!6;UBERON:0002616!6.16e-08!59;UBERON:0002780!2.32e-07!41;UBERON:0001890!2.32e-07!41;UBERON:0006240!2.32e-07!41;UBERON:0003080!3.99e-07!42;UBERON:0001801!5.66e-07!14;UBERON:0000007!9.61e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;7.50e-42;11!UBERON:0000970;2.03e-40;20!UBERON:0002104;2.22e-38;21!UBERON:0000019;1.20e-35;19!UBERON:0000047;1.20e-35;19!UBERON:0004088;1.20e-35;19!UBERON:0010230;1.20e-35;19!UBERON:0000020;7.79e-35;23!UBERON:0001032;2.77e-33;24!UBERON:0004456;2.77e-33;24!UBERON:0001456;4.72e-32;21!UBERON:0000966;6.32e-30;5!UBERON:0005388;6.32e-30;5!UBERON:0001802;6.32e-30;5!UBERON:0000488;5.65e-24;4!UBERON:0001781;2.10e-18;3!UBERON:0001782;2.10e-18;3!UBERON:0001778;2.81e-18;3!UBERON:0001775;2.81e-18;3!UBERON:0002203;4.77e-16;6!UBERON:0001768;4.77e-16;6!UBERON:0002200;4.77e-16;6!UBERON:0001801;1.26e-14;14!UBERON:0003296;3.14e-13;4!UBERON:0010133;3.14e-13;4!UBERON:0010371;3.40e-13;31!UBERON:0000007;2.04e-12;2!UBERON:0001444;2.76e-09;48!UBERON:0006876;8.38e-09;11!UBERON:0000033;1.05e-08;50!UBERON:0001894;9.08e-08;7!UBERON:0002506;1.98e-07;1!UBERON:0001769;1.98e-07;1!UBERON:0002336;9.72e-07;1!UBERON:0011215;9.72e-07;1!UBERON:0001018;9.72e-07;1!UBERON:0002473;9.72e-07;1!UBERON:0005340;9.72e-07;1!UBERON:0003544;9.72e-07;1!UBERON:0005970;9.72e-07;1!UBERON:0002316;9.72e-07;1!UBERON:0001020;9.72e-07;1!UBERON:0002437;9.72e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,6.82e-42,11;UBERON:0000970,2.08e-38,21;UBERON:0002104,2.08e-38,21;UBERON:0000019,8.68e-34,20;UBERON:0000047,8.68e-34,20;UBERON:0010312,8.68e-34,20;UBERON:0004088,8.68e-34,20;UBERON:0010230,8.68e-34,20;UBERON:0003072,8.68e-34,20;UBERON:0004128,8.68e-34,20;UBERON:0003071,8.68e-34,20;UBERON:0000020,2.62e-33,24;UBERON:0001032,2.62e-33,24;UBERON:0004456,2.62e-33,24;UBERON:0001456,1.59e-30,22;UBERON:0000966,6.16e-25,6;UBERON:0005388,6.16e-25,6;UBERON:0001802,6.16e-25,6;UBERON:0000488,5.66e-24,4;UBERON:0005085,4.76e-21,31;UBERON:0001782,1.98e-18,3;UBERON:0005424,1.98e-18,3;UBERON:0001778,2.81e-18,3;UBERON:0001775,2.81e-18,3;UBERON:0003056,5.89e-18,61;UBERON:0002203,4.77e-16,6;UBERON:0001768,4.77e-16,6;UBERON:0002200,4.77e-16,6;UBERON:0002346,1.51e-15,86;UBERON:0001801,1.23e-14,14;UBERON:0003075,1.83e-14,82;UBERON:0007284,1.83e-14,82;UBERON:0001781,5.86e-14,4;UBERON:0003296,2.89e-13,4;UBERON:0010133,2.89e-13,4;UBERON:0001444,1.54e-12,49;UBERON:0000007,2.04e-12,2;UBERON:0010371,9.84e-11,104;UBERON:0000033,1.04e-10,56;UBERON:0000153,1.79e-09,62;UBERON:0007811,1.79e-09,62;UBERON:0004121,5.70e-09,171;UBERON:0000924,5.70e-09,171;UBERON:0006601,5.70e-09,171;UBERON:0006876,8.38e-09,11;UBERON:0001894,8.66e-08,7;UBERON:0006222,8.66e-08,7;UBERON:0010314,8.68e-08,132;UBERON:0002506,1.98e-07,1;UBERON:0001769,1.98e-07,1;UBERON:0010077,9.76e-07,4;UBERON:0005389,9.76e-07,4;UBERON:0000484,9.76e-07,4;UBERON:0002546,9.76e-07,4;UBERON:0000965,9.76e-07,4;UBERON:0001803,9.76e-07,4;UBERON:0003073,9.76e-07,4;UBERON:0005426,9.76e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6528966604305,5.76496433402666,8.51997421223323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43947412259191,3.31324420803713,9.29551542956147,18.0370235726745,2.52320850875628,2.55484151353081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.5881372358231,0,0,0,0,0,0,1.44331342025273,98.6567746337904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621984346622316,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.5707207693206,4.59220503979588,9.76135183992909,0,0.0915694648183434,0.330037999682352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614481528616916,0.223676107892416,0.667396566847634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,12.3447046448595,0,0,0,0,0,0,0,0,0,0,0.74214478529481,0,0,0,0,0,0,0.236387681767936,0,0.291604613383254,0,0.885741385813839,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0.434589487688032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21322039365219,0,0,0,0,0,0,0,0,0,3.60776206594782,0.414752765588989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,61.2407807515243,0,0,0,2.34661659281764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,1.12527203925513,0.962776056180637,0.415440338029185,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0.332787154610557,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0.19998739585493,3.09406016113009,0,0,0,0,0,0,0,2.83078695340614,0,2.37625541935635,0,0,11.7315432774381,0,0,0,0,0,0.0642292250964595,0,0.638535436228605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0.535701835878287,1.68141861109412,3.03482802118316,3.87025725297206,0,0,0,0,0,0,0,0,0,0,0,0,0,44.6728401104102,53.4086007656616,0,0,0,0,0,0,0,0,0,0,0.68732060563215,0,0,0,0,0,0,0,0,0.971421986118279,10.0593969288705,0,0,0,2.19881033490858,16.1530242616341,0,0,0,0,0,1.37415926980462,0,0,0,0,0,0,0,0,0,0,0,0,0.315543124386369,0,0,0,0,0,0,0,0,0,0.509944148709909,9.61982658956018,0,0.250707539292375,0.0757786982182394,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@RAX | |||
}} |
Latest revision as of 01:18, 20 September 2015
Short description: | p1@RAX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAX_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000256852, ENST00000334889, NM_013435, uc002lhx.2, uc010dpp.2_5end |
EntrezGene: | RAX |
HGNC: | 18662 |
UniProt: | Q86V11Q9Y2V3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.31e-28 | 5 |
pigment cell | 8.11e-20 | 14 |
retinal pigment epithelial cell | 1.98e-18 | 3 |
ciliated cell | 2.81e-18 | 3 |
ciliated epithelial cell | 2.81e-18 | 3 |
multi-ciliated epithelial cell | 2.81e-18 | 3 |
non-pigmented ciliary epithelial cell | 2.81e-18 | 3 |
visual pigment cell | 5.86e-14 | 4 |
columnar/cuboidal epithelial cell | 1.17e-12 | 27 |
neurecto-epithelial cell | 5.21e-10 | 20 |
neurectodermal cell | 9.72e-08 | 59 |
pigment cell (sensu Vertebrata) | 1.98e-07 | 1 |
iris pigment epithelial cell | 1.98e-07 | 1 |
crystallin accumulating cell | 9.76e-07 | 4 |
vertebrate lens cell | 9.76e-07 | 4 |
lens epithelial cell | 9.76e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
syndrome | 5.14e-07 | 1 |