FFCP PHASE1:Hg19::chr17:37824700..37824714,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5409 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9160 | |||
|TSSclassifier=strong | |||
|UniProt=P11086 | |||
|association_with_transcript=193bp_to_ENST00000269582,NM_002686,uc002hsi.1_5end | |||
|cluster_id=chr17:37824700..37824714,+ | |||
|coexpression_cluster_id=C477 | |||
|description=CAGE_peak_2_at_PNMT_5end | |||
|id=chr17:37824700..37824714,+ | |||
|ontology_enrichment_celltype=CL:0000349!2.82e-08!3;CL:0002577!2.82e-08!3;CL:0002541!2.18e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.91e-38;19!CL:0002577;9.34e-29;3!CL:0002536;8.14e-20;2!CL:0002575;6.53e-19;2!CL:0002541;2.47e-13;3!CL:0000669;6.25e-10;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.00e-38,19;CL:0002577,8.92e-29,3;CL:0002536,8.54e-20,2;CL:0002575,6.53e-19,2;CL:0002541,2.47e-13,3;CL:0000669,6.25e-10,4 | |||
|ontology_enrichment_development_v019=UBERON:0007297;5.44e-19;2!UBERON:0005754;1.43e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003124!5.84e-16!7;UBERON:0005631!2.70e-15!14;UBERON:0000158!2.70e-15!14;UBERON:0007023!2.15e-13!115;UBERON:0001987!2.90e-10!4;UBERON:0004340!2.90e-10!4;UBERON:0000478!1.01e-09!24;UBERON:0003135!1.18e-08!11;UBERON:0006947!4.77e-08!3;UBERON:0004054!4.77e-08!3;UBERON:0001896!8.17e-08!3;UBERON:0005290!8.17e-08!3;UBERON:0010096!8.17e-08!3;UBERON:0000476!2.18e-07!3;UBERON:0000920!2.18e-07!3;UBERON:0004175!2.31e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;3.40e-30;24!UBERON:0006947;1.08e-27;3!UBERON:0004054;1.08e-27;3!UBERON:0005631;4.16e-23;10!UBERON:0000158;4.16e-23;10!UBERON:0001987;9.75e-22;4!UBERON:0005904;6.07e-21;4!UBERON:0003124;2.47e-13;3!UBERON:0000920;2.47e-13;3!UBERON:0001896;7.40e-13;3!UBERON:0005290;7.40e-13;3!UBERON:0000305;1.42e-12;7!UBERON:0000998;1.43e-10;1!UBERON:0006868;1.43e-10;1!UBERON:0001000;1.73e-10;1!UBERON:0005352;1.73e-10;1!UBERON:0002336;3.61e-10;1!UBERON:0001301;3.61e-10;1!UBERON:0011215;3.61e-10;1!UBERON:0001018;3.61e-10;1!UBERON:0002473;3.61e-10;1!UBERON:0005340;3.61e-10;1!UBERON:0003544;3.61e-10;1!UBERON:0005970;3.61e-10;1!UBERON:0002316;3.61e-10;1!UBERON:0001020;3.61e-10;1!UBERON:0002437;3.61e-10;1!UBERON:0000058;1.02e-08;10!UBERON:0003135;5.74e-08;11!UBERON:0002298;7.30e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.85e-41,14;UBERON:0000158,1.85e-41,14;UBERON:0003124,3.38e-33,7;UBERON:0000478,3.52e-30,24;UBERON:0006947,7.50e-28,3;UBERON:0004054,7.50e-28,3;UBERON:0001987,9.42e-22,4;UBERON:0004340,9.42e-22,4;UBERON:0005904,4.62e-21,4;UBERON:0000920,2.47e-13,3;UBERON:0001896,6.56e-13,3;UBERON:0005290,6.56e-13,3;UBERON:0010096,6.56e-13,3;UBERON:0004175,6.91e-13,25;UBERON:0000305,1.51e-12,7;UBERON:0004871,4.79e-11,8;UBERON:0000998,1.43e-10,1;UBERON:0006868,1.43e-10,1;UBERON:0001000,1.57e-10,1;UBERON:0005352,1.57e-10,1;UBERON:0001301,2.74e-10,1;UBERON:0002336,3.96e-10,1;UBERON:0011215,3.96e-10,1;UBERON:0001018,3.96e-10,1;UBERON:0002473,3.96e-10,1;UBERON:0005340,3.96e-10,1;UBERON:0003544,3.96e-10,1;UBERON:0005970,3.96e-10,1;UBERON:0002316,3.96e-10,1;UBERON:0001020,3.96e-10,1;UBERON:0002437,3.96e-10,1;UBERON:0004923,5.14e-08,66;UBERON:0003135,5.21e-08,11;UBERON:0002298,6.88e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,24.2469923064491,62.5127738401435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973269740605272,0.189069634328136,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,146.50783345569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0.207970861530807,0,0,0,0,0,1.03473071292505,0,0.184369168541703,0,3.52442083432933,1.37257369524342,0,0,0,30.6158847160722,24.9653159265746,41.4274701861662,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,1.39705560002972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,3.10367830158997,0,0,0,0,0,0,0,0,0,0.503865495708552,0,0,0,0,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0.262379999988587,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0.108647371922008,15.950057986596,0.0915975934018623,6.92945208824225,0,0.156980256395025,0.332423363800313,0,0,0.167821586975843,0.569261198172555,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,1.21322039365219,0,0,0,0,0,3.55125962564451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7472666824203,0,0,0,0,0,0,0,0,0.19871461170299,0.189932387867636,0,0,0,2.39771531498556,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,2.89176089707246,0,0.229160424011684,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0.137539436597234,0.415440338029185,0,0,0.0607495566580247,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0.157204305099666,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,2.5513681853476,1.42821726765182,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0.139879507719444,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0.11796972334774,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0,0.620916591138472,0,0,0,0.0657727735628491,0,0,0.39246546425257,0.785577949580009,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,4.65725755210022,0.22910686854405,0,0,0,0,0,0,0.102662806856247,1.1598144313382,0,0,0.397901550322736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0,0,0.101988829741982,0,0.0918948995348449,0,0.151557396436479,0.267964130156178,0,0,0,0,0,0.0620747142958579,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@PNMT | |||
}} |
Latest revision as of 22:29, 19 September 2015
Short description: | p2@PNMT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PNMT_5end |
Coexpression cluster: | C477_Mesenchymal_Amniotic_Placental_chorionic_umbilical_Cardiac_acute |
Association with transcript: | 193bp_to_ENST00000269582, NM_002686, uc002hsi.1_5end |
EntrezGene: | PNMT |
HGNC: | 9160 |
UniProt: | P11086 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.00e-38 | 19 |
placental epithelial cell | 8.92e-29 | 3 |
amniotic epithelial cell | 8.54e-20 | 2 |
central nervous system pericyte | 6.53e-19 | 2 |
chorionic membrane mesenchymal stem cell | 2.47e-13 | 3 |
pericyte cell | 6.25e-10 | 4 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.85e-41 | 14 |
membranous layer | 1.85e-41 | 14 |
chorion | 3.38e-33 | 7 |
extraembryonic structure | 3.52e-30 | 24 |
male genital duct | 7.50e-28 | 3 |
internal male genitalia | 7.50e-28 | 3 |
placenta | 9.42e-22 | 4 |
allantois | 9.42e-22 | 4 |
duct of male reproductive system | 4.62e-21 | 4 |
egg chorion | 2.47e-13 | 3 |
medulla oblongata | 6.56e-13 | 3 |
myelencephalon | 6.56e-13 | 3 |
future myelencephalon | 6.56e-13 | 3 |
internal genitalia | 6.91e-13 | 25 |
amnion | 1.51e-12 | 7 |
somatic layer of lateral plate mesoderm | 4.79e-11 | 8 |
seminal vesicle | 1.43e-10 | 1 |
seminal fluid secreting gland | 1.43e-10 | 1 |
vas deferens | 1.57e-10 | 1 |
spermatic cord | 1.57e-10 | 1 |
epididymis | 2.74e-10 | 1 |
corpus callosum | 3.96e-10 | 1 |
central nervous system cell part cluster | 3.96e-10 | 1 |
axon tract | 3.96e-10 | 1 |
intercerebral commissure | 3.96e-10 | 1 |
dorsal telencephalic commissure | 3.96e-10 | 1 |
brain white matter | 3.96e-10 | 1 |
brain commissure | 3.96e-10 | 1 |
white matter | 3.96e-10 | 1 |
nervous system commissure | 3.96e-10 | 1 |
cerebral hemisphere white matter | 3.96e-10 | 1 |
organ component layer | 5.14e-08 | 66 |
male reproductive organ | 5.21e-08 | 11 |
brainstem | 6.88e-07 | 6 |